ClCG02G001410 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTAGAGCTCCATTTTATGATGAAAATGGAGTGAAAAAAGGTGCATGGAGTGCTGAAGAAGATGAGAAGCTTAAAGCTTACGTTCAACAACATGGCCATTGCAATTGGCGAGAGCTCCCTAAATATGCTGGTAATTTAATTAGTTCATTCATTAATTCATATTAACTTCTAAAAACCTTTTAATTATGACATAATATACAAAACTTTGTCCATTTGAGTTCATTTGATCTTGATGTTCCTCTTTTCTCTTAAGTTATTTTGTAAAAACAAAACAACCCATTTGAAAAAATGGCCCCTTATACTTAATTTTGTTTTCAATTGCTTTAGTACACCTTATACGGAAATTAATTGGACATACCCATTTAGTTTAATTTTGATTTTCTTCTTTCTTTGAAGTTGTTTAGGAAAATTACAGATAACCCATTTTAAAAAATGGCCCCTTTTAGTTAATTTTGTTTTCAATTGCTTTGATAAATCTTATAGAGAGATGAATTGGATTTCCCCGTTGATTAAGTTTAATTTTGATTTTCTTCTTTCTTTGAAGCTATTTAGGAAAAACACAAATAACCCATTTGAAAAAATTGCCCCTTTTAGTTAATTTTGTTTGCAATTGCTTTAAAAACCTTACAGAGAGGTGAATTTGGATAGAGTCGTGCAGTTTAATTTTAATTTTCTTATTTCGTTGAAGCTATTTAGTAAAAACACAAATAACCCATTTGAAAGAGGGCTCCTTTTAGTTAATTTTGCTTTCAATTGCTTCATTAAACCTAGTAGAGAGATGAATAATTGGATATCACCTTAGAGTTCATTCTATCTTCTTCTTTCCTTTAGAGTTTAATTATTTTGTAAATCCCCATTTGAAAAATGGCTTCTTAATTTACTTTTGCTTTCAACTTCTTTAATAAACTTAGGTTTGAGAGATATGAGTTGCATATATTGTCTTTGATTCATTCTTCTTCTTTCTAAGAAGTTTTTCAGTAAAAATATAAAATAAATTTTAGTAACCCATTTGAAAAGATGACATCTTTTAGTGAATTTTACCTTTAAGAAGATAAATAGTTTACATATTATATGAATCGATTATTGTTTTTTTTTTTAGTCTTTTCACATAAAGTTGATTATATGAGCTGTGCTCTTGATTCTCAATGATCTTGATATGCATATAACTTATTAATTAATTAAATATTTTATTTGAATACTGAAATTTGGTTATGATTTTTTTTCATAATTAGGTTTGTCGAGATGTGGCAAAAGTTGCAGGTTACGTTGGATCAATTACCTTCGTCCAGATGTGAAAAGAGGAAATTACTCCAAAGAAGAAGAAGAACTAATCCTCCAATTACATCAAAAACATGGAAACAAGTATGATTTTTCTTTCTAAATATTCATCAAATATCCCTAAACCCAAAACCAATAATTATAAGATTAAATTTCAATATTAATATCACATATATTATCAAAACTAGACAATTCAATCTATAATATATGCGTTATGAGATAATATCATCATTATCGTTGCTTCTTCTATCTCGCTTTGAATTAGAGAGCATTCTTCTCTTTTGTATGTTCCTTACATATACTATATCAATTGATATCATTTTTTAAAATAGAAAAAAGAACACGCAAGTCAATTCATATTTGAAAAAATCAATTAGAATATTTGTTTGTTTCTTATAACAAAATAGTTCATTTGATCGATTGACTAATTTTGTTTAAATAAAATTCAAGGATTTACCACCTTGTATATGAAGATTATGTTTTTTAGGTTAAATTGGTTAGTAATAGTTATGTTCCACTTGTTAAAGTAGCTAAAATATATGTCAATTCTATTATCCAACTATTAGTTACTCATAACGGTTATAATTATTTTTTACTTCAGATGGTCACTTATAGCTGCAAATTTGTCGGGACGAACGGATAACGAAATAAAAAACTATTGGCACACCCATTTAAAGAAGGTAAAAGCTAACAAGGTTACAAAGAAGCTACAAAATGATGAAATTTCCAAGCAAAAATCCACCCAGAAAAGAGAGATATCAGAAATCAAAACCAATTTGACAGACCAAATTCCTTCTCATCAAATCTTTGAGAGCTCTCCATTTTCACCTTTGTCCTCTGAAATTTCCACTGTGTGCTCCAATCAAGAATCCACAGAAGATAGCCCTCCAACAACATTCAAGTTTCAAGAACTATATGATAAGAATGGAGATTTTTGGGCTAATCCATTTCTAGCAGACAATTTAGAAGCTGAAAGTGAAAACTCAATGAACTTTGATTTGATTGGAGGGTTCAATCCACCTTATGATTTGGAGTTTGATGAAAACTACTTGTTCTACCAAGCAATGAAAGAATTGCCTGAGAATTATCAACCCCAATTGTATCCCTACTGA ATGGTTAGAGCTCCATTTTATGATGAAAATGGAGTGAAAAAAGGTGCATGGAGTGCTGAAGAAGATGAGAAGCTTAAAGCTTACGTTCAACAACATGGCCATTGCAATTGGCGAGAGCTCCCTAAATATGCTGCTGCAAATTTGTCGGGACGAACGGATAACGAAATAAAAAACTATTGGCACACCCATTTAAAGAAGGTAAAAGCTAACAAGGTTACAAAGAAGCTACAAAATGATGAAATTTCCAAGCAAAAATCCACCCAGAAAAGAGAGATATCAGAAATCAAAACCAATTTGACAGACCAAATTCCTTCTCATCAAATCTTTGAGAGCTCTCCATTTTCACCTTTGTCCTCTGAAATTTCCACTGTGTGCTCCAATCAAGAATCCACAGAAGATAGCCCTCCAACAACATTCAAGTTTCAAGAACTATATGATAAGAATGGAGATTTTTGGGCTAATCCATTTCTAGCAGACAATTTAGAAGCTGAAAGTGAAAACTCAATGAACTTTGATTTGATTGGAGGGTTCAATCCACCTTATGATTTGGAGTTTGATGAAAACTACTTGTTCTACCAAGCAATGAAAGAATTGCCTGAGAATTATCAACCCCAATTGTATCCCTACTGA ATGGTTAGAGCTCCATTTTATGATGAAAATGGAGTGAAAAAAGGTGCATGGAGTGCTGAAGAAGATGAGAAGCTTAAAGCTTACGTTCAACAACATGGCCATTGCAATTGGCGAGAGCTCCCTAAATATGCTGCTGCAAATTTGTCGGGACGAACGGATAACGAAATAAAAAACTATTGGCACACCCATTTAAAGAAGGTAAAAGCTAACAAGGTTACAAAGAAGCTACAAAATGATGAAATTTCCAAGCAAAAATCCACCCAGAAAAGAGAGATATCAGAAATCAAAACCAATTTGACAGACCAAATTCCTTCTCATCAAATCTTTGAGAGCTCTCCATTTTCACCTTTGTCCTCTGAAATTTCCACTGTGTGCTCCAATCAAGAATCCACAGAAGATAGCCCTCCAACAACATTCAAGTTTCAAGAACTATATGATAAGAATGGAGATTTTTGGGCTAATCCATTTCTAGCAGACAATTTAGAAGCTGAAAGTGAAAACTCAATGAACTTTGATTTGATTGGAGGGTTCAATCCACCTTATGATTTGGAGTTTGATGAAAACTACTTGTTCTACCAAGCAATGAAAGAATTGCCTGAGAATTATCAACCCCAATTGTATCCCTACTGA MVRAPFYDENGVKKGAWSAEEDEKLKAYVQQHGHCNWRELPKYAAANLSGRTDNEIKNYWHTHLKKVKANKVTKKLQNDEISKQKSTQKREISEIKTNLTDQIPSHQIFESSPFSPLSSEISTVCSNQESTEDSPPTTFKFQELYDKNGDFWANPFLADNLEAESENSMNFDLIGGFNPPYDLEFDENYLFYQAMKELPENYQPQLYPY
BLAST of ClCG02G001410 vs. Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 8.9e-09 Identity = 54/195 (27.69%), Postives = 76/195 (38.97%), Query Frame = 1
BLAST of ClCG02G001410 vs. Swiss-Prot
Match: MYB34_ARATH (Transcription factor MYB34 OS=Arabidopsis thaliana GN=MYB34 PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.4e-08 Identity = 35/100 (35.00%), Postives = 54/100 (54.00%), Query Frame = 1
HSP 2 Score: 49.3 bits (116), Expect = 6.0e-05 Identity = 41/137 (29.93%), Postives = 64/137 (46.72%), Query Frame = 1
BLAST of ClCG02G001410 vs. Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=3 SV=2) HSP 1 Score: 60.1 bits (144), Expect = 3.4e-08 Identity = 43/125 (34.40%), Postives = 60/125 (48.00%), Query Frame = 1
HSP 2 Score: 42.4 bits (98), Expect = 7.3e-03 Identity = 21/67 (31.34%), Postives = 33/67 (49.25%), Query Frame = 1
BLAST of ClCG02G001410 vs. Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 7.5e-08 Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1
HSP 2 Score: 46.6 bits (109), Expect = 3.9e-04 Identity = 34/115 (29.57%), Postives = 42/115 (36.52%), Query Frame = 1
BLAST of ClCG02G001410 vs. Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2) HSP 1 Score: 58.9 bits (141), Expect = 7.5e-08 Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1
HSP 2 Score: 54.3 bits (129), Expect = 1.9e-06 Identity = 41/152 (26.97%), Postives = 70/152 (46.05%), Query Frame = 1
BLAST of ClCG02G001410 vs. TrEMBL
Match: B9RHM0_RICCO (R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1761410 PE=4 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 4.3e-26 Identity = 74/162 (45.68%), Postives = 97/162 (59.88%), Query Frame = 1
BLAST of ClCG02G001410 vs. TrEMBL
Match: A0A118JWU4_CYNCS (Homeodomain-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_001997 PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 7.3e-26 Identity = 75/176 (42.61%), Postives = 97/176 (55.11%), Query Frame = 1
BLAST of ClCG02G001410 vs. TrEMBL
Match: A0A103XTH5_CYNCS (Homeodomain-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_001305 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21 Identity = 72/211 (34.12%), Postives = 112/211 (53.08%), Query Frame = 1
BLAST of ClCG02G001410 vs. TrEMBL
Match: B9RHM2_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1761730 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 7.1e-21 Identity = 69/180 (38.33%), Postives = 100/180 (55.56%), Query Frame = 1
BLAST of ClCG02G001410 vs. TrEMBL
Match: A0A067JXL7_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_26464 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18 Identity = 75/212 (35.38%), Postives = 109/212 (51.42%), Query Frame = 1
BLAST of ClCG02G001410 vs. TAIR10
Match: AT1G18710.1 (AT1G18710.1 myb domain protein 47) HSP 1 Score: 67.8 bits (164), Expect = 9.2e-12 Identity = 47/157 (29.94%), Postives = 73/157 (46.50%), Query Frame = 1
HSP 2 Score: 43.1 bits (100), Expect = 2.4e-04 Identity = 34/130 (26.15%), Postives = 62/130 (47.69%), Query Frame = 1
BLAST of ClCG02G001410 vs. TAIR10
Match: AT5G10280.1 (AT5G10280.1 myb domain protein 92) HSP 1 Score: 67.0 bits (162), Expect = 1.6e-11 Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
HSP 2 Score: 44.7 bits (104), Expect = 8.3e-05 Identity = 23/55 (41.82%), Postives = 32/55 (58.18%), Query Frame = 1
BLAST of ClCG02G001410 vs. TAIR10
Match: AT5G16770.1 (AT5G16770.1 myb domain protein 9) HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11 Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
HSP 2 Score: 47.8 bits (112), Expect = 9.8e-06 Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1
BLAST of ClCG02G001410 vs. TAIR10
Match: AT1G34670.1 (AT1G34670.1 myb domain protein 93) HSP 1 Score: 65.5 bits (158), Expect = 4.5e-11 Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 1
HSP 2 Score: 48.9 bits (115), Expect = 4.4e-06 Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1
BLAST of ClCG02G001410 vs. TAIR10
Match: AT4G21440.1 (AT4G21440.1 MYB-like 102) HSP 1 Score: 63.9 bits (154), Expect = 1.3e-10 Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1
HSP 2 Score: 50.1 bits (118), Expect = 2.0e-06 Identity = 44/175 (25.14%), Postives = 76/175 (43.43%), Query Frame = 1
BLAST of ClCG02G001410 vs. NCBI nr
Match: gi|659110699|ref|XP_008455365.1| (PREDICTED: transcription factor WER-like [Cucumis melo]) HSP 1 Score: 229.9 bits (585), Expect = 3.9e-57 Identity = 139/212 (65.57%), Postives = 157/212 (74.06%), Query Frame = 1
BLAST of ClCG02G001410 vs. NCBI nr
Match: gi|659110699|ref|XP_008455365.1| (PREDICTED: transcription factor WER-like [Cucumis melo]) HSP 1 Score: 95.9 bits (237), Expect = 8.9e-17 Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 1
HSP 2 Score: 206.5 bits (524), Expect = 4.7e-50 Identity = 131/210 (62.38%), Postives = 148/210 (70.48%), Query Frame = 1
BLAST of ClCG02G001410 vs. NCBI nr
Match: gi|449438468|ref|XP_004137010.1| (PREDICTED: transcription repressor MYB6-like [Cucumis sativus]) HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16 Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 1
HSP 2 Score: 126.3 bits (316), Expect = 6.1e-26 Identity = 74/162 (45.68%), Postives = 97/162 (59.88%), Query Frame = 1
BLAST of ClCG02G001410 vs. NCBI nr
Match: gi|976908725|gb|KVH95936.1| (Homeodomain-like protein [Cynara cardunculus var. scolymus]) HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25 Identity = 75/176 (42.61%), Postives = 97/176 (55.11%), Query Frame = 1
BLAST of ClCG02G001410 vs. NCBI nr
Match: gi|976909500|gb|KVH96606.1| (Homeodomain-like protein [Cynara cardunculus var. scolymus]) HSP 1 Score: 110.5 bits (275), Expect = 3.5e-21 Identity = 72/211 (34.12%), Postives = 112/211 (53.08%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |