Carg03158 (gene) Silver-seed gourd

Overview
NameCarg03158
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMyb transcription factor
LocationCucurbita_argyrosperma_scaffold_005 : 388751 .. 389942 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAGGGTGATGAGAGAGAGAGAGAAGATGGTGAAAATGGAAGAAGAAAGGGTAGATGGAGTAAGGAGGAAGATGAGAAACTTAGAGCTTATGTTACCAAATATGGCTCTTGGAATTGGCGCTTAATTCCCAAGTTTGCAGGTAATTCATGCATTCATTCATTATGAACTAATTAATTCATGTTTGGTCACTTAGTTTTACTAATAAACATGAACATGATGGTACCGTTTAGGTCTATCCCGATGTGGAAAAAGCTGTAGATTGCGTTGGATGAACTACTTGGCGCCTGATATTAAAAGAGGGAACTTCCAAAAGGAAGAGGATCAAACCATCCTTCGATTGCAAGCAACTCTCGGAAATAGGTCATTTGTAACAGCCCAGATACACACACTACTAGTAGATATTGTCTTTTTTGAGCTTTCCCTTTAAAATGCGTCTACTAGGGAAAGGTTTCCACGTTCTTATAAAGGGTGTTTCGTTCTCCTCCCAATCAACGTGGGATTCTCACATCATCTTTGTTGAGGATTGTTGGGAGGGAGTTGCACCTTGACTAAATGATCATGGGCTTATAAGTAAGAAATACCTCTCCATTGGTAATTAGGTCTTTTGGGGGAGTCCCACGAGAGCTTATACTCAAAGTGACAATATCATACCATTGTAGAGAGCGGTTATTCTTAATATCCTTCCTAAACCCTCTCGTATGTATACTCAACTCTTACGCAATGCATAATGGATTTGGACAGGTGGTCTGCCATTGCAGCTCATTTACCGGGGAGAACAGATAACGACATAAAGAATCATTGGCACACGAACTTAAAGAAACTTTTGGATCAGAACCCGTCAAACACGGAGGTTGAAGAAGCAGCAGCTAGTTCATGCTCGGAATTAAGAATCCGAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAATTGGATGAAACCCTTTTTGTTTTGAATTCAGAAATGGCAACCCCAGAATTAGCAGCCAAGCATAAAGGCATGAACTTTGGGGAAACTGAGACATGGGTTGTTGGTTTGAATGCTGAACACTCTATGGAACTGGGCGGCAACTTATGGACCGATCCTTTTGTTCTTGAAGACCCTTTAAGTTTGGATAATAACCCAACTCATGTACCAATGGATCTCTTACAACATTATGAAATGTTTCCTCCCATTCAGTTTTGA

mRNA sequence

ATGGAAGAAGAGGGTGATGAGAGAGAGAGAGAAGATGGTGAAAATGGAAGAAGAAAGGGTAGATGGAGTAAGGAGGAAGATGAGAAACTTAGAGCTTATGTTACCAAATATGGCTCTTGGAATTGGCGCTTAATTCCCAAGTGGTCTGCCATTGCAGCTCATTTACCGGGGAGAACAGATAACGACATAAAGAATCATTGGCACACGAACTTAAAGAAACTTTTGGATCAGAACCCGTCAAACACGGAGGTTGAAGAAGCAGCAGCTAGTTCATGCTCGGAATTAAGAATCCGAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAATTGGATGAAACCCTTTTTGTTTTGAATTCAGAAATGGCAACCCCAGAATTAGCAGCCAAGCATAAAGGCATGAACTTTGGGGAAACTGAGACATGGGTTGTTGGTTTGAATGCTGAACACTCTATGGAACTGGGCGGCAACTTATGGACCGATCCTTTTGTTCTTGAAGACCCTTTAAGTTTGGATAATAACCCAACTCATGTACCAATGGATCTCTTACAACATTATGAAATGTTTCCTCCCATTCAGTTTTGA

Coding sequence (CDS)

ATGGAAGAAGAGGGTGATGAGAGAGAGAGAGAAGATGGTGAAAATGGAAGAAGAAAGGGTAGATGGAGTAAGGAGGAAGATGAGAAACTTAGAGCTTATGTTACCAAATATGGCTCTTGGAATTGGCGCTTAATTCCCAAGTGGTCTGCCATTGCAGCTCATTTACCGGGGAGAACAGATAACGACATAAAGAATCATTGGCACACGAACTTAAAGAAACTTTTGGATCAGAACCCGTCAAACACGGAGGTTGAAGAAGCAGCAGCTAGTTCATGCTCGGAATTAAGAATCCGAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAATTGGATGAAACCCTTTTTGTTTTGAATTCAGAAATGGCAACCCCAGAATTAGCAGCCAAGCATAAAGGCATGAACTTTGGGGAAACTGAGACATGGGTTGTTGGTTTGAATGCTGAACACTCTATGGAACTGGGCGGCAACTTATGGACCGATCCTTTTGTTCTTGAAGACCCTTTAAGTTTGGATAATAACCCAACTCATGTACCAATGGATCTCTTACAACATTATGAAATGTTTCCTCCCATTCAGTTTTGA

Protein sequence

MEEEGDEREREDGENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPKWSAIAAHLPGRTDNDIKNHWHTNLKKLLDQNPSNTEVEEAAASSCSELRIREEEEEEEGEEELDETLFVLNSEMATPELAAKHKGMNFGETETWVVGLNAEHSMELGGNLWTDPFVLEDPLSLDNNPTHVPMDLLQHYEMFPPIQF
Homology
[Close]
BLAST of Carg03158 vs. NCBI nr
Match: XP_023512256.1 (transcription factor WER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.8 bits (782), Expect = 1.0e-79
Identity = 161/236 (68.22%), Postives = 164/236 (69.49%), Query Frame = 0 

Query: 1   MEEEGDEREREDGENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPK------------- 60
           MEEEGDEREREDGENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPK             
Sbjct: 1   MEEEGDEREREDGENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPKFAGLSRCGKSCRL 60

Query: 61  ---------------------------------WSAIAAHLPGRTDNDIKNHWHTNLKKL 120
                                            WSAIAAHLPGRTDN+IKNHWHTNLKKL
Sbjct: 61  RWMNYLAPNIKRGNFQKEEDQTILRLQATLGNRWSAIAAHLPGRTDNEIKNHWHTNLKKL 120

Query: 121 LDQNPSNTEVEXXXXXXXXXXXXXXXXXXXXXXXXLDETLFVLNSEMATPELAAKHKGMN 180
           LDQNPSNTEVE                        LDETLFVLNS+MA PELAAKH+GMN
Sbjct: 121 LDQNPSNTEVE---------EAAASSCSELRIREELDETLFVLNSDMAAPELAAKHEGMN 180

Query: 181 FGETETWVVGLNAEHSMELGGNLWTDPFVLEDPLSLDNNPTHVPMDLLQHYEMFPP 191
           FGETETWVVGLNAEHSMELGGNLWTDPFVLEDPLSLDNNPTHVPMDL QHYEMFPP
Sbjct: 181 FGETETWVVGLNAEHSMELGGNLWTDPFVLEDPLSLDNNPTHVPMDLFQHYEMFPP 227

[Close]
BLAST of Carg03158 vs. NCBI nr
Match: XP_022986201.1 (transcription factor MYB13-like [Cucurbita maxima])

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 154/236 (65.25%), Postives = 162/236 (68.64%), Query Frame = 0 

Query: 1   MEEEGDEREREDGENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPK------------- 60
           MEEEGDERERE+GENGR+KG+WSKEEDEKLRAYVTKYGSWNWRLIPK             
Sbjct: 1   MEEEGDERERENGENGRKKGKWSKEEDEKLRAYVTKYGSWNWRLIPKFAGLSRCGKSCRL 60

Query: 61  ---------------------------------WSAIAAHLPGRTDNDIKNHWHTNLKKL 120
                                            WSAIA +LPGRTDN+IKNHWHTNLKKL
Sbjct: 61  RWMNYLRPDIKRGNFQKEEDQTILRLQATLGNRWSAIATYLPGRTDNEIKNHWHTNLKKL 120

Query: 121 LDQNPSNTEVEXXXXXXXXXXXXXXXXXXXXXXXXLDETLFVLNSEMATPELAAKHKGMN 180
           LDQNPSNTEVE                        LDETL VLNSEMATPELAAKH+GMN
Sbjct: 121 LDQNPSNTEVE------DAAASSCSELRIREEEEELDETLIVLNSEMATPELAAKHEGMN 180

Query: 181 FGETETWVVGLNAEHSMELGGNLWTDPFVLEDPLSLDNNPTHVPMDLLQHYEMFPP 191
           FGETETWVVGLNAEHSME+GGNLWTDPFV EDPLSLDNNPTHVPMDL +HYEMFPP
Sbjct: 181 FGETETWVVGLNAEHSMEVGGNLWTDPFVFEDPLSLDNNPTHVPMDLFEHYEMFPP 230

[Close]
BLAST of Carg03158 vs. NCBI nr
Match: XP_022944071.1 (transcription factor MYB13-like [Cucurbita moschata])

HSP 1 Score: 278.1 bits (710), Expect = 2.3e-71
Identity = 150/236 (63.56%), Postives = 155/236 (65.68%), Query Frame = 0 

Query: 4   EGDEREREDGENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPK---------------- 63
           +G  + R+ G     KGRWSKEEDEKLRAYVTKYGSWNWRLIPK                
Sbjct: 9   QGCIKRRKRGFVWPSKGRWSKEEDEKLRAYVTKYGSWNWRLIPKFAGLSRCGKSCRLRWM 68

Query: 64  ------------------------------WSAIAAHLPGRTDNDIKNHWHTNLKKLLDQ 123
                                         WSAIAAHLPGRTDNDIKNHWHTNLKKLLDQ
Sbjct: 69  NYLAPDIKRGNFQKEEDQTILRLQATLGNRWSAIAAHLPGRTDNDIKNHWHTNLKKLLDQ 128

Query: 124 NPSNTEVEXXXXXXXXXXXXXXXXXXXXXXXXLDETLFVLNSEMATPELAAKHKGMNFGE 183
           NPSNTEVE                        LDETLFVLNS+MATPELAAKH+GMNFGE
Sbjct: 129 NPSNTEVE----EAAASSCSELRIREEEEGEELDETLFVLNSDMATPELAAKHEGMNFGE 188

Query: 184 TETWVVGLNAEHSMELGGNLWTDPFVLEDPLSLDNNPTHVPMDLLQHYEMFPPIQF 194
           TETWVVGLNAEHSMELGGNLWTDPFVLEDPLSLDNNPTHVPMDLLQHYEMFPP  F
Sbjct: 189 TETWVVGLNAEHSMELGGNLWTDPFVLEDPLSLDNNPTHVPMDLLQHYEMFPPTHF 240

[Close]
BLAST of Carg03158 vs. NCBI nr
Match: EEF49107.1 (r2r3-myb transcription factor, putative [Ricinus communis])

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 14 ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPKWSAIAAHLPGRTDNDIKNHWHTNLKK 73
          +NG +KG WS+EED+KLRAY+ KYG WNWR +PKWS IAA LPGRTDN++KN+WHT+LKK
Sbjct: 9  KNGLKKGAWSREEDDKLRAYILKYGHWNWRELPKWSKIAAQLPGRTDNEVKNYWHTHLKK 68

Query: 74 LLDQNPSNT 83
             +  S +
Sbjct: 69 RTQRTQSKS 77

[Close]
BLAST of Carg03158 vs. NCBI nr
Match: KVH96606.1 (Homeodomain-like protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-18
Identity = 42/65 (64.62%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 14 ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPKWSAIAAHLPGRTDNDIKNHWHTNLKK 73
          +NG+RKG WSKEED+KLRAY+ +YG WNWR IP+WS IAA LPGR+DN+IKN+W+++L+K
Sbjct: 9  KNGKRKGPWSKEEDDKLRAYIERYGHWNWREIPRWSTIAAKLPGRSDNEIKNYWNSHLRK 68

Query: 74 LLDQN 79
             Q+
Sbjct: 69 RSKQD 73

[Close]
BLAST of Carg03158 vs. TAIR10
Match: AT5G56110.1 (myb domain protein 103)

HSP 1 Score: 68.6 bits (166), Expect = 5.0e-12
Identity = 37/104 (35.58%), Postives = 49/104 (47.12%), Query Frame = 0 

Query: 18  RKGRWSKEEDEKLRAYVTKYGSWNWRLIPK------------------------------ 76
           ++G+W+ EED KL +Y+ ++G+ NWRLIPK                              
Sbjct: 13  KRGQWTPEEDNKLASYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSE 72

[Close]
BLAST of Carg03158 vs. TAIR10
Match: AT1G34670.1 (myb domain protein 93)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11
Identity = 40/110 (36.36%), Postives = 50/110 (45.45%), Query Frame = 0 

Query: 14  ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIP--------------------------- 73
           ENG +KG W+ EED+KL  Y+ K+G  +WR +P                           
Sbjct: 9   ENGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNYLRPDIKRG 68

Query: 74  -------------------KWSAIAAHLPGRTDNDIKNHWHTNLKKLLDQ 78
                              KWSAIA HL GRTDN+IKN W+T+LKK L Q
Sbjct: 69  KFSAEEEQTILHLHSILGNKWSAIATHLQGRTDNEIKNFWNTHLKKKLIQ 118

[Close]
BLAST of Carg03158 vs. TAIR10
Match: AT4G21440.1 (MYB-like 102)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11
Identity = 38/108 (35.19%), Postives = 50/108 (46.30%), Query Frame = 0 

Query: 14  ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIP--------------------------- 73
           +NG +KG W+ EED+KL  Y+ K+G  NWR +P                           
Sbjct: 9   KNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRG 68

Query: 74  -------------------KWSAIAAHLPGRTDNDIKNHWHTNLKKLL 76
                              KWSAIAA LPGRTDN+IKN W+T+++K L
Sbjct: 69  RFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKL 116

[Close]
BLAST of Carg03158 vs. TAIR10
Match: AT4G28110.1 (myb domain protein 41)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11
Identity = 38/108 (35.19%), Postives = 50/108 (46.30%), Query Frame = 0 

Query: 14  ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIP--------------------------- 73
           +NG +KG W+ EED+KL  Y+  +G  NWR +P                           
Sbjct: 9   KNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNYLRPDIKRG 68

Query: 74  -------------------KWSAIAAHLPGRTDNDIKNHWHTNLKKLL 76
                              KWSAIAA LPGRTDN+IKNHW+T+++K L
Sbjct: 69  RFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKRL 116

[Close]
BLAST of Carg03158 vs. TAIR10
Match: AT2G31180.1 (myb domain protein 14)

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-11
Identity = 40/112 (35.71%), Postives = 50/112 (44.64%), Query Frame = 0 

Query: 16  GRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPK---------------------------- 75
           G ++G W+ EED+ L  Y+  YG  NWR +PK                            
Sbjct: 11  GVKRGPWTPEEDQILINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINYLRPDIKRGNF 70

Query: 76  ------------------WSAIAAHLPGRTDNDIKNHWHTNLKKLLDQNPSN 82
                             WSAIAA LPGRTDN+IKN WHT+LKK L +N +N
Sbjct: 71  TPQEEQTIINLHESLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLSKNLNN 122

[Close]
BLAST of Carg03158 vs. Swiss-Prot
Match: sp|Q7XQN1|MYB80_ORYSJ (Transcription factor MYB80 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB80 PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 40/104 (38.46%), Postives = 50/104 (48.08%), Query Frame = 0 

Query: 18  RKGRWSKEEDEKLRAYVTKYGSWNWRLIPK------------------------------ 76
           ++G+W+ EED KL +Y+T+YG+ NWRLIPK                              
Sbjct: 13  KRGQWTPEEDNKLLSYITQYGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGEFTD 72

[Close]
BLAST of Carg03158 vs. Swiss-Prot
Match: sp|Q9XHV0|MYB80_ARATH (Transcription factor MYB80 OS=Arabidopsis thaliana OX=3702 GN=MYB80 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.9e-11
Identity = 37/104 (35.58%), Postives = 49/104 (47.12%), Query Frame = 0 

Query: 18  RKGRWSKEEDEKLRAYVTKYGSWNWRLIPK------------------------------ 76
           ++G+W+ EED KL +Y+ ++G+ NWRLIPK                              
Sbjct: 13  KRGQWTPEEDNKLASYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSE 72

[Close]
BLAST of Carg03158 vs. Swiss-Prot
Match: sp|Q9LDR8|MY102_ARATH (Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10
Identity = 38/108 (35.19%), Postives = 50/108 (46.30%), Query Frame = 0 

Query: 14  ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIP--------------------------- 73
           +NG +KG W+ EED+KL  Y+ K+G  NWR +P                           
Sbjct: 9   KNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRG 68

Query: 74  -------------------KWSAIAAHLPGRTDNDIKNHWHTNLKKLL 76
                              KWSAIAA LPGRTDN+IKN W+T+++K L
Sbjct: 69  RFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKL 116

[Close]
BLAST of Carg03158 vs. Swiss-Prot
Match: sp|Q9M0J5|MYB41_ARATH (Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10
Identity = 38/108 (35.19%), Postives = 50/108 (46.30%), Query Frame = 0 

Query: 14  ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIP--------------------------- 73
           +NG +KG W+ EED+KL  Y+  +G  NWR +P                           
Sbjct: 9   KNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNYLRPDIKRG 68

Query: 74  -------------------KWSAIAAHLPGRTDNDIKNHWHTNLKKLL 76
                              KWSAIAA LPGRTDN+IKNHW+T+++K L
Sbjct: 69  RFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKRL 116

[Close]
BLAST of Carg03158 vs. Swiss-Prot
Match: sp|Q7XBH4|MYB4_ORYSJ (Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10
Identity = 39/107 (36.45%), Postives = 49/107 (45.79%), Query Frame = 0 

Query: 16  GRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPK---------------------------- 75
           G +KG W+ EED+ L A++ ++G  NWR +PK                            
Sbjct: 11  GLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNF 70

Query: 76  ------------------WSAIAAHLPGRTDNDIKNHWHTNLKKLLD 77
                             WSAIAA LPGRTDN+IKN WHT+LKK LD
Sbjct: 71  SKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLD 117

[Close]
BLAST of Carg03158 vs. TrEMBL
Match: tr|B9RHM0|B9RHM0_RICCO (R2r3-myb transcription factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1761410 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 14 ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPKWSAIAAHLPGRTDNDIKNHWHTNLKK 73
          +NG +KG WS+EED+KLRAY+ KYG WNWR +PKWS IAA LPGRTDN++KN+WHT+LKK
Sbjct: 9  KNGLKKGAWSREEDDKLRAYILKYGHWNWRELPKWSKIAAQLPGRTDNEVKNYWHTHLKK 68

Query: 74 LLDQNPSNT 83
             +  S +
Sbjct: 69 RTQRTQSKS 77

[Close]
BLAST of Carg03158 vs. TrEMBL
Match: tr|A0A103XTH5|A0A103XTH5_CYNCS (Homeodomain-like protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_001305 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-18
Identity = 42/65 (64.62%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 14 ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPKWSAIAAHLPGRTDNDIKNHWHTNLKK 73
          +NG+RKG WSKEED+KLRAY+ +YG WNWR IP+WS IAA LPGR+DN+IKN+W+++L+K
Sbjct: 9  KNGKRKGPWSKEEDDKLRAYIERYGHWNWREIPRWSTIAAKLPGRSDNEIKNYWNSHLRK 68

Query: 74 LLDQN 79
             Q+
Sbjct: 69 RSKQD 73

[Close]
BLAST of Carg03158 vs. TrEMBL
Match: tr|A0A118JWU4|A0A118JWU4_CYNCS (Homeodomain-like protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_001997 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.3e-18
Identity = 58/179 (32.40%), Postives = 87/179 (48.60%), Query Frame = 0 

Query: 14  ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPK---------WSAIAAHLPGRTDNDIK 73
           +NG +KG WS++ED KLRAYV +YG WNWRL+PK         WS +AA+LPGR+DN+IK
Sbjct: 9   KNGVKKGAWSEDEDNKLRAYVQRYGHWNWRLLPKFAGMSHFPEWSEMAAYLPGRSDNEIK 68

Query: 74  NHWHTNLKKLLDQNPSNTEVEXXXXXXXXXXXXXXXXXXXXXXXXLDETLFVLNSEMATP 133
           N WHT+LKK   ++ +  E E                        L + + +L +E    
Sbjct: 69  NRWHTHLKKRAQKDQTELENEHIGTVEPDQTNNTEENLVQNSDLQLQQDIEILLAESPLS 128

Query: 134 ELAAKHKGMNFGETETWVVGLNAEHSMELGGNLWTDPFVLE-DPLSLDNNPTHVPMDLL 183
                   +N  ++      +         G+ WTDPF  + D +   ++   +P DL+
Sbjct: 129 SSTTNLSWLNGFDSAGSSDDIPQLTDYAPVGDFWTDPFFSDNDSIISSSDNLFLPSDLV 187

[Close]
BLAST of Carg03158 vs. TrEMBL
Match: tr|A0A2N9J0C4|A0A2N9J0C4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57937 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.8e-17
Identity = 63/214 (29.44%), Postives = 84/214 (39.25%), Query Frame = 0 

Query: 14  ENGRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPK-------------------------- 73
           ++G +KG W+ EED KL AYVTKYG WNWR +PK                          
Sbjct: 9   KSGMKKGTWTPEEDRKLIAYVTKYGCWNWRQLPKFAGLSRCGKSCRLRWMNYLRPNIKRG 68

Query: 74  --------------------WSAIAAHLPGRTDNDIKNHWHTNLKKLLDQNPSNTEVEXX 133
                               WSAIA+HLPGRTDN+IKNHWHTNLKK L QN    E    
Sbjct: 69  NYSKEEEDTIIKLHDSLGNRWSAIASHLPGRTDNEIKNHWHTNLKKSLKQNSVTNEENPS 128

Query: 134 XXXXXXXXXXXXXXXXXXXXXXLDETLFVLNSEMATPELAAKHKGMNFGETETWVVGLN- 167
                                     + +++S + +P+ +      +  +T     G N 
Sbjct: 129 SNNHSQRGKKQKRTKGPNDSHLNQAIVEIIDSSLLSPQQSLSEFSSSTTDTTAIATGTNM 188

[Close]
BLAST of Carg03158 vs. TrEMBL
Match: tr|A0A103XTW9|A0A103XTW9_CYNCS (Homeodomain-like protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_001075 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.1e-17
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 16 GRRKGRWSKEEDEKLRAYVTKYGSWNWRLIPKWSAIAAHLPGRTDNDIKNHWHTNLKK 74
          G +KG WS EED KL +Y+ +YG WNW  +PKWSAIA+ LPGRTDN+IKNHWHT LKK
Sbjct: 11 GLKKGSWSLEEDHKLISYINRYGIWNWSQMPKWSAIASRLPGRTDNEIKNHWHTRLKK 68

The following BLAST results are available for this feature:
BLAST of Carg03158 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023512256.11.0e-7968.22transcription factor WER-like [Cucurbita pepo subsp. pepo][more]
XP_022986201.12.3e-7665.25transcription factor MYB13-like [Cucurbita maxima][more]
XP_022944071.12.3e-7163.56transcription factor MYB13-like [Cucurbita moschata][more]
EEF49107.11.5e-1963.77r2r3-myb transcription factor, putative [Ricinus communis][more]
KVH96606.15.0e-1864.62Homeodomain-like protein [Cynara cardunculus var. scolymus][more]
BLAST of Carg03158 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G56110.15.0e-1235.58myb domain protein 103[more]
AT1G34670.11.9e-1136.36myb domain protein 93[more]
AT4G21440.11.9e-1135.19MYB-like 102[more]
AT4G28110.11.9e-1135.19myb domain protein 41[more]
AT2G31180.14.2e-1135.71myb domain protein 14[more]
BLAST of Carg03158 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q7XQN1|MYB80_ORYSJ1.2e-1238.46Transcription factor MYB80 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB80 PE=... [more]
sp|Q9XHV0|MYB80_ARATH8.9e-1135.58Transcription factor MYB80 OS=Arabidopsis thaliana OX=3702 GN=MYB80 PE=1 SV=1[more]
sp|Q9LDR8|MY102_ARATH3.4e-1035.19Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1[more]
sp|Q9M0J5|MYB41_ARATH3.4e-1035.19Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1[more]
sp|Q7XBH4|MYB4_ORYSJ3.4e-1036.45Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 ... [more]
BLAST of Carg03158 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|B9RHM0|B9RHM0_RICCO1.0e-1963.77R2r3-myb transcription factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1761... [more]
tr|A0A103XTH5|A0A103XTH5_CYNCS3.3e-1864.62Homeodomain-like protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_00... [more]
tr|A0A118JWU4|A0A118JWU4_CYNCS7.3e-1832.40Homeodomain-like protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_00... [more]
tr|A0A2N9J0C4|A0A2N9J0C4_FAGSY2.8e-1729.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57937 PE=4 SV=1[more]
tr|A0A103XTW9|A0A103XTW9_CYNCS8.1e-1768.97Homeodomain-like protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_00... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR017930Myb_dom
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03158-RACarg03158-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 18..73
e-value: 2.2E-13
score: 60.4
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 19..70
e-value: 1.7E-15
score: 56.8
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 21..71
e-value: 4.48914E-13
score: 59.5114
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 21..104
e-value: 3.0E-19
score: 70.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..110
NoneNo IPR availablePANTHERPTHR10641:SF541SUBFAMILY NOT NAMEDcoord: 47..114
coord: 14..48
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 47..114
coord: 14..48
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 14..75
score: 23.038
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 16..76