CsGy7G003820 (gene) Cucumber (Gy14) v2

Overview
NameCsGy7G003820
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptiontranscription factor WER-like isoform X2
LocationChr7 : 2910830 .. 2914357 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTTTGGGTGAGCTGTGTAAGTCTGCTTTTCTGTCTTCTGTCTTCATCAAAAGTCTAAGCAATGTTGAATGCGCATTTATTTCCTCCCTAAGTACAATATTTTTCAAACTAATTGTTATCCTTTCACAAGAATTTTCATACTTTATTTTCTATGTAAAGCATATAAAAGAAAAAAGAAAAAAAAATCGAAATAATTAAAATGAACGAATATGGATATATGTCATTTCAACTAATTAAAATCTTAGCTAAGAAAAGAAAACGTGGATTAATTCTGTACAAACGCACTAAATTAAACGTGTTTCAACGTATTATTAGCCGCATCTTTTTTATATTCTTATTAGCAAACAATTTTTAGAGACTTTGAGTTGTTTTAGAGTCGTTTTTCCCTTCTTTCTATTTTATAAAAATCAATGTTATAAGAAACACAATGACTTTTTCAAATTAAATAGAGTTTTCCCCTTTCAATTTAGTAATATGTTTGTGATGATTTTAACGAGGATAGCAAGATTTTTCATAAAAAGTAATTTAATTTTATGTCAAAATTGCACGAACCTAACTCTATTCACATCCCATGTGTATTAGTAAAGAAAAGCCACAAATCTATTGTACTGAAAAAATCAATTTTACTTTGTTGTTAATTTATGTACTTTTTAAAAAATAATTTTGTTGTTGAAAAAGCCATATTTAAATTTAATGAATGTTTGATTCAAACTTTTTTTGATGTATTTGTTGTTCTATTGGCATGTAGACGTTGTATTTAGTGAATTAGTGGTTAATTAATTAAAGTATGTATTCATCTATGTCAGGAAAACTTTTTACAAAATGGCATAGTTAGAGAAGTCTTGGAATAATTCAAGGTTAAATTGAAAAGAATATAGATTTGTAAAGAAAGGATGATTAAAAGTAAAATGGACTAATTATTTTATACATATATCCCCAAAAGAAAAAAGAAAAAAAAAAGAAAAAGAAAAAGAGAGTAGAAAATGTCGAAAATGCCCCTCTCGGTTGGATTGTCTATTCAAATGATGCTTCTTTTTTTGTTGTTGTTGTTTCTGGGCAGTGAACTTTAATTTGATCGTACTTTGTCCTTTTATTATGTTTTGATGAAACACGATGGATTTTTCATGGCATCTTCTCCCTCTTTGGGTCCCTTCTTTCTTTCTTCTCGAAACAGCAGTAATATGTACAATTTTTTATTCACTTATATATATAAATTCTTTAGTGGACTATAAGTCTTTCTTCATCAGACACAGACTTCAAGTTTTCAACTCTCACCATCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCAAAAACTTCTGTTCCAATTTCTGTTCATAATTACTAGATATGGTTAGAGCTCCATTTTATGATGAAAATGGAATTAAAAAAGGTGCATGGAGTGCTGAAGAAGATGAAAAGCTCAGAGCTTATGTTCAAGAATATGGTCATTGCAATTGGCGAGAGCTTCCTAGATATGCTGGTAATTCGTTCGCTAAAGTTACTAAGTTAATTCATTGATTAATTGATTGATGATTGATTCATATAAACCTCCAAAATCCCTTTTGGGTATAATATGTAATTGACAAATTAAAGAACTAATGACCCATTTGAAAAAAATATATGGCTCCTTATACTTGGTTTTGTTTTCAATTGCTTTACTAAAACCTTGTAGAGAGATGGACTATACCATAACTTACAAAGTATTATGATCCTTTTGAGTTCATATTTGATCTTGATCTTCTTTTCTCTCAAGTTCTTTTGTAAAATTCAAAACATCCATTTAAAAAGAAAATGGCCCTCTTTTACTTAATTTCAGTTTTAATTTCTTTAATTATATACACCTTATTGTGAGATGAACTGGATATCCCCCATTAATTAAGTTTAATTTTGATTTTCTTCTTTCTTTGAAATTAATTATTTAGTAAAACCCCAAATAACCCACTTAAAAAAAATAGCCCTTTTTACTTAACTTTGTTTTTTTCGACTGCTTCAATAAAAACCTTTATAGATAGATGAATCAGATAGTTTCATTTTAGGGTTTATTCTTCTTTTTTTGAAGTTAGTAAAAACAAAAACAATAACCCAGCTGGAATCAAAGAGGGCTCCTTTAGTTTTAGTATAGTTTAGGTTTTAATAGAGAAATTAATAATTGAGAATATCACCTTAGTGTTCAATCCATATCTTCTTCTTTCCTATGAAGTTTGTTTTGTAGAATCTCATTTCCAAAAGATGTCTTCTTTTTCTAATTACTTTAAAATAAACCAAGTTATGCATATAACTTAATTACATATTCTTGATGAACATGGTATAATTAATTTAATTAAACAAGTATTTTATTGAGATACTGAGATTTGGTTGTGATTTTTTTCATGATTAGGTTTGTTGAGGTGTGGTAAAAGTTGTCGACTGCGTTGGATCAATTACCTTCGTCCAGATGTGAAAAGAGGCAATTACTCCAAAGAAGAAGAACAATTAATCCTACAATTGCATCAACAATATGGAAACAAGTATGATTTTTTTTTCTAAGTATTAATTTCATCAAACATTAATATCACATGTTTTCAATATATATATGCATCTCTCTTATGATATATCATTACCAATGTTACTTCTGATAACTAGAGAGCTTTCCTTTAATTTAATCACTCCTTTATACATTTCTTGTATGCTATCAATGAATCATCCTTTTTCAATAAATAAAAGAAAATACATTTCATTTTCAGAAGAGCGATTAGATTAGAATTAAGGTTAGTATGTTTAATCAGTATCCTTCCATTTGAGTATTAGCTAATTTTGTTCAAATAATTAATCTATTCAAATATTTTTTTTAGGTTAAACCGATTTGTCATAGTTATGCTATACAATAGTTTGGTGTAGTTAAAATAGTTAAAATATGTGCGAAAAAATCTCTTATCGTAATATTAGTTATATTTATAATGTATGATTAATTTTTTCTTCAGATGGTCAATGATAGCTACAAAATTACCCGGACGAACCGATAACGAAATAAAGAATTATTGGCATACCCATTTAAAGAAGGTGAAAAGCAACAAGAATGCAAAGAAGCATGAGGAGGAGGAAATTTGCAGTAATAAAAAACCCATCCAAAAGAGAGAAACTACAATAACATCAGAAGACAAAACCATTCTGACCAAAGAAATACTGCCATTATCTCATCAGATATTTGAAAGCTCTTCATTTTCGACTTTGTCCTCTGAAATTTCCACAGTGACTTCGAATCAAGAATCCACACAAGATAGCCCTCCAACACCATTATTCAAGTTTCAAGAAGAACCATATGATCATCATAACAATGGAGATTTTTGGGCTAATCCATTGTTTGAAGCTGAAAATTATTTTGAAGCTGAAAGTGATCAAAACTCAATCAACTTTGGTTTTACTGGAGGCTTCAATCACACTTATGATTTTGAGTTACTTGATGAAAACTACTTGTTAGATCAAGCAATGAAAGAATTGCCTGAAAATTATCAATCCCAATTGTATCTCTTTTGA

mRNA sequence

ATGGCCCTTTGGGTGAGCTGTAGAGATGGACTATACCATAACTTACAAATGACTTCGAATCAAGAATCCACACAAGATAGCCCTCCAACACCATTATTCAAGTTTCAAGAAGAACCATATGATCATCATAACAATGGAGATTTTTGGGCTAATCCATTGTTTGAAGCTGAAAATTATTTTGAAGCTGAAAGTGATCAAAACTCAATCAACTTTGGTTTTACTGGAGGCTTCAATCACACTTATGATTTTGAGTTACTTGATGAAAACTACTTGTTAGATCAAGCAATGAAAGAATTGCCTGAAAATTATCAATCCCAATTGTATCTCTTTTGA

Coding sequence (CDS)

ATGGCCCTTTGGGTGAGCTGTAGAGATGGACTATACCATAACTTACAAATGACTTCGAATCAAGAATCCACACAAGATAGCCCTCCAACACCATTATTCAAGTTTCAAGAAGAACCATATGATCATCATAACAATGGAGATTTTTGGGCTAATCCATTGTTTGAAGCTGAAAATTATTTTGAAGCTGAAAGTGATCAAAACTCAATCAACTTTGGTTTTACTGGAGGCTTCAATCACACTTATGATTTTGAGTTACTTGATGAAAACTACTTGTTAGATCAAGCAATGAAAGAATTGCCTGAAAATTATCAATCCCAATTGTATCTCTTTTGA

Protein sequence

MALWVSCRDGLYHNLQMTSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGGFNHTYDFELLDENYLLDQAMKELPENYQSQLYLF
Homology
[Close]
BLAST of CsGy7G003820 vs. NCBI nr
Match: XP_004137010.1 (PREDICTED: transcription repressor MYB6-like [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.0e-47
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 17  MTSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGG 76
           +TSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGG
Sbjct: 178 VTSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGG 237

Query: 77  FNHTYDFELLDENYLLDQAMKELPENYQSQLYLF 111
           FNHTYDFELLDENYLLDQAMKELPENYQSQLYLF
Sbjct: 238 FNHTYDFELLDENYLLDQAMKELPENYQSQLYLF 271

[Close]
BLAST of CsGy7G003820 vs. NCBI nr
Match: XP_008455365.1 (PREDICTED: transcription factor WER-like isoform X2 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 7.7e-40
Identity = 82/94 (87.23%), Postives = 83/94 (88.30%), Query Frame = 0 

Query: 17  MTSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGG 76
           +TSNQESTQDSPPTPLFKFQEEPYDHHNNGD W NPLF AENY EAESDQN INFGF GG
Sbjct: 178 VTSNQESTQDSPPTPLFKFQEEPYDHHNNGDLWVNPLFVAENYLEAESDQNPINFGFIGG 237

Query: 77  FNHTYDFELLDENYLLDQAMKELPENYQSQLYLF 111
           FN  YDFELLDENYL  QAMKELPENYQSQLY F
Sbjct: 238 FNQPYDFELLDENYLFCQAMKELPENYQSQLYPF 271

[Close]
BLAST of CsGy7G003820 vs. NCBI nr
Match: XP_023554593.1 (transcription factor MYB4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 51/90 (56.67%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 19  SNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGGFN 78
           SNQESTQDSPPT  FKFQE    ++NNGDFW  P F  +N  EA+S QN +       F+
Sbjct: 169 SNQESTQDSPPT-TFKFQEA--SNNNNGDFWDVP-FLVDN-LEAQS-QNPM------FFH 228

Query: 79  HTYDFELLDENYLLDQAMKELPENYQSQLY 109
             YDFE  DE  L  Q MKELPENYQ  LY
Sbjct: 229 VNYDFE-FDEADLFYQVMKELPENYQPYLY 245

[Close]
BLAST of CsGy7G003820 vs. NCBI nr
Match: XP_022952680.1 (transcription factor MYB58-like [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 48/90 (53.33%), Postives = 54/90 (60.00%), Query Frame = 0 

Query: 19  SNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGGFN 78
           SNQESTQDSPPT  FKFQE    ++NNGDFW  P F  +N  EA+S            F+
Sbjct: 169 SNQESTQDSPPT-TFKFQET--SNNNNGDFWDVP-FLVDN-LEAQSQDPMF-------FH 228

Query: 79  HTYDFELLDENYLLDQAMKELPENYQSQLY 109
             YDFE  D+  L  Q MKELPENYQ  LY
Sbjct: 229 INYDFE-FDQADLFYQVMKELPENYQPYLY 245

[Close]
BLAST of CsGy7G003820 vs. NCBI nr
Match: XP_022969236.1 (transcription factor MYB4-like [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 48/90 (53.33%), Postives = 54/90 (60.00%), Query Frame = 0 

Query: 19  SNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGGFN 78
           SNQESTQDSPPT  FKFQE    ++NNGDFW  P F  +N  EA+S            F+
Sbjct: 170 SNQESTQDSPPT-TFKFQET--SNNNNGDFWDVP-FLVDN-LEAQSQDPMF-------FH 229

Query: 79  HTYDFELLDENYLLDQAMKELPENYQSQLY 109
             YDFE  D+  L  Q MKELPENYQ  LY
Sbjct: 230 VNYDFE-FDQADLFYQVMKELPENYQPYLY 246

[Close]
BLAST of CsGy7G003820 vs. TrEMBL
Match: tr|A0A1S3C0B0|A0A1S3C0B0_CUCME (transcription factor WER-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495551 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.1e-40
Identity = 82/94 (87.23%), Postives = 83/94 (88.30%), Query Frame = 0 

Query: 17  MTSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGG 76
           +TSNQESTQDSPPTPLFKFQEEPYDHHNNGD W NPLF AENY EAESDQN INFGF GG
Sbjct: 178 VTSNQESTQDSPPTPLFKFQEEPYDHHNNGDLWVNPLFVAENYLEAESDQNPINFGFIGG 237

Query: 77  FNHTYDFELLDENYLLDQAMKELPENYQSQLYLF 111
           FN  YDFELLDENYL  QAMKELPENYQSQLY F
Sbjct: 238 FNQPYDFELLDENYLFCQAMKELPENYQSQLYPF 271

The following BLAST results are available for this feature:
BLAST of CsGy7G003820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137010.11.0e-4798.94PREDICTED: transcription repressor MYB6-like [Cucumis sativus][more]
XP_008455365.17.7e-4087.23PREDICTED: transcription factor WER-like isoform X2 [Cucumis melo][more]
XP_023554593.11.6e-0856.67transcription factor MYB4-like [Cucurbita pepo subsp. pepo][more]
XP_022952680.13.5e-0853.33transcription factor MYB58-like [Cucurbita moschata][more]
XP_022969236.13.5e-0853.33transcription factor MYB4-like [Cucurbita maxima][more]
BLAST of CsGy7G003820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy7G003820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy7G003820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C0B0|A0A1S3C0B0_CUCME5.1e-4087.23transcription factor WER-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495551... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G003820.1CsGy7G003820.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..37

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy7G003820MELO3C018776Melon (DHL92) v3.5.1cgybmeB468
CsGy7G003820ClCG02G001410Watermelon (Charleston Gray)cgybwcgB506
CsGy7G003820CSPI07G04190Wild cucumber (PI 183967)cgybcpiB332
CsGy7G003820MELO3C028590.2Melon (DHL92) v3.6.1cgybmedB465
CsGy7G003820CsaV3_7G004040Cucumber (Chinese Long) v3cgybcucB348
CsGy7G003820Cla97C02G027860Watermelon (97103) v2cgybwmbB502
CsGy7G003820Bhi05G001563Wax gourdcgybwgoB633
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy7G003820Cucumber (Chinese Long) v3cgybcucB311
CsGy7G003820Wax gourdcgybwgoB655
CsGy7G003820Bottle gourd (USVL1VR-Ls)cgyblsiB457
CsGy7G003820Cucumber (Gy14) v2cgybcgybB153
CsGy7G003820Cucurbita maxima (Rimu)cgybcmaB896
CsGy7G003820Cucurbita maxima (Rimu)cgybcmaB909
CsGy7G003820Cucurbita maxima (Rimu)cgybcmaB944
CsGy7G003820Cucurbita maxima (Rimu)cgybcmaB960
CsGy7G003820Cucurbita moschata (Rifu)cgybcmoB877
CsGy7G003820Cucurbita moschata (Rifu)cgybcmoB892
CsGy7G003820Cucurbita moschata (Rifu)cgybcmoB927
CsGy7G003820Cucurbita moschata (Rifu)cgybcmoB943
CsGy7G003820Cucurbita pepo (Zucchini)cgybcpeB910
CsGy7G003820Cucurbita pepo (Zucchini)cgybcpeB964
CsGy7G003820Cucurbita pepo (Zucchini)cgybcpeB973
CsGy7G003820Cucumber (Chinese Long) v2cgybcuB324
CsGy7G003820Bottle gourd (USVL1VR-Ls)cgyblsiB462
CsGy7G003820Watermelon (Charleston Gray)cgybwcgB497
CsGy7G003820Watermelon (97103) v1cgybwmB558
CsGy7G003820Wild cucumber (PI 183967)cgybcpiB299
CsGy7G003820Silver-seed gourdcarcgybB0032
CsGy7G003820Silver-seed gourdcarcgybB0641
CsGy7G003820Silver-seed gourdcarcgybB0717
CsGy7G003820Silver-seed gourdcarcgybB0864