CsGy7G003820.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy7G003820.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptiontranscription factor WER-like isoform X2
LocationChr7 : 2910830 .. 2914357 (+)
Sequence length333
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTTTGGGTGAGCTGTGTAAGTCTGCTTTTCTGTCTTCTGTCTTCATCAAAAGTCTAAGCAATGTTGAATGCGCATTTATTTCCTCCCTAAGTACAATATTTTTCAAACTAATTGTTATCCTTTCACAAGAATTTTCATACTTTATTTTCTATGTAAAGCATATAAAAGAAAAAAGAAAAAAAAATCGAAATAATTAAAATGAACGAATATGGATATATGTCATTTCAACTAATTAAAATCTTAGCTAAGAAAAGAAAACGTGGATTAATTCTGTACAAACGCACTAAATTAAACGTGTTTCAACGTATTATTAGCCGCATCTTTTTTATATTCTTATTAGCAAACAATTTTTAGAGACTTTGAGTTGTTTTAGAGTCGTTTTTCCCTTCTTTCTATTTTATAAAAATCAATGTTATAAGAAACACAATGACTTTTTCAAATTAAATAGAGTTTTCCCCTTTCAATTTAGTAATATGTTTGTGATGATTTTAACGAGGATAGCAAGATTTTTCATAAAAAGTAATTTAATTTTATGTCAAAATTGCACGAACCTAACTCTATTCACATCCCATGTGTATTAGTAAAGAAAAGCCACAAATCTATTGTACTGAAAAAATCAATTTTACTTTGTTGTTAATTTATGTACTTTTTAAAAAATAATTTTGTTGTTGAAAAAGCCATATTTAAATTTAATGAATGTTTGATTCAAACTTTTTTTGATGTATTTGTTGTTCTATTGGCATGTAGACGTTGTATTTAGTGAATTAGTGGTTAATTAATTAAAGTATGTATTCATCTATGTCAGGAAAACTTTTTACAAAATGGCATAGTTAGAGAAGTCTTGGAATAATTCAAGGTTAAATTGAAAAGAATATAGATTTGTAAAGAAAGGATGATTAAAAGTAAAATGGACTAATTATTTTATACATATATCCCCAAAAGAAAAAAGAAAAAAAAAAGAAAAAGAAAAAGAGAGTAGAAAATGTCGAAAATGCCCCTCTCGGTTGGATTGTCTATTCAAATGATGCTTCTTTTTTTGTTGTTGTTGTTTCTGGGCAGTGAACTTTAATTTGATCGTACTTTGTCCTTTTATTATGTTTTGATGAAACACGATGGATTTTTCATGGCATCTTCTCCCTCTTTGGGTCCCTTCTTTCTTTCTTCTCGAAACAGCAGTAATATGTACAATTTTTTATTCACTTATATATATAAATTCTTTAGTGGACTATAAGTCTTTCTTCATCAGACACAGACTTCAAGTTTTCAACTCTCACCATCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCAAAAACTTCTGTTCCAATTTCTGTTCATAATTACTAGATATGGTTAGAGCTCCATTTTATGATGAAAATGGAATTAAAAAAGGTGCATGGAGTGCTGAAGAAGATGAAAAGCTCAGAGCTTATGTTCAAGAATATGGTCATTGCAATTGGCGAGAGCTTCCTAGATATGCTGGTAATTCGTTCGCTAAAGTTACTAAGTTAATTCATTGATTAATTGATTGATGATTGATTCATATAAACCTCCAAAATCCCTTTTGGGTATAATATGTAATTGACAAATTAAAGAACTAATGACCCATTTGAAAAAAATATATGGCTCCTTATACTTGGTTTTGTTTTCAATTGCTTTACTAAAACCTTGTAGAGAGATGGACTATACCATAACTTACAAAGTATTATGATCCTTTTGAGTTCATATTTGATCTTGATCTTCTTTTCTCTCAAGTTCTTTTGTAAAATTCAAAACATCCATTTAAAAAGAAAATGGCCCTCTTTTACTTAATTTCAGTTTTAATTTCTTTAATTATATACACCTTATTGTGAGATGAACTGGATATCCCCCATTAATTAAGTTTAATTTTGATTTTCTTCTTTCTTTGAAATTAATTATTTAGTAAAACCCCAAATAACCCACTTAAAAAAAATAGCCCTTTTTACTTAACTTTGTTTTTTTCGACTGCTTCAATAAAAACCTTTATAGATAGATGAATCAGATAGTTTCATTTTAGGGTTTATTCTTCTTTTTTTGAAGTTAGTAAAAACAAAAACAATAACCCAGCTGGAATCAAAGAGGGCTCCTTTAGTTTTAGTATAGTTTAGGTTTTAATAGAGAAATTAATAATTGAGAATATCACCTTAGTGTTCAATCCATATCTTCTTCTTTCCTATGAAGTTTGTTTTGTAGAATCTCATTTCCAAAAGATGTCTTCTTTTTCTAATTACTTTAAAATAAACCAAGTTATGCATATAACTTAATTACATATTCTTGATGAACATGGTATAATTAATTTAATTAAACAAGTATTTTATTGAGATACTGAGATTTGGTTGTGATTTTTTTCATGATTAGGTTTGTTGAGGTGTGGTAAAAGTTGTCGACTGCGTTGGATCAATTACCTTCGTCCAGATGTGAAAAGAGGCAATTACTCCAAAGAAGAAGAACAATTAATCCTACAATTGCATCAACAATATGGAAACAAGTATGATTTTTTTTTCTAAGTATTAATTTCATCAAACATTAATATCACATGTTTTCAATATATATATGCATCTCTCTTATGATATATCATTACCAATGTTACTTCTGATAACTAGAGAGCTTTCCTTTAATTTAATCACTCCTTTATACATTTCTTGTATGCTATCAATGAATCATCCTTTTTCAATAAATAAAAGAAAATACATTTCATTTTCAGAAGAGCGATTAGATTAGAATTAAGGTTAGTATGTTTAATCAGTATCCTTCCATTTGAGTATTAGCTAATTTTGTTCAAATAATTAATCTATTCAAATATTTTTTTTAGGTTAAACCGATTTGTCATAGTTATGCTATACAATAGTTTGGTGTAGTTAAAATAGTTAAAATATGTGCGAAAAAATCTCTTATCGTAATATTAGTTATATTTATAATGTATGATTAATTTTTTCTTCAGATGGTCAATGATAGCTACAAAATTACCCGGACGAACCGATAACGAAATAAAGAATTATTGGCATACCCATTTAAAGAAGGTGAAAAGCAACAAGAATGCAAAGAAGCATGAGGAGGAGGAAATTTGCAGTAATAAAAAACCCATCCAAAAGAGAGAAACTACAATAACATCAGAAGACAAAACCATTCTGACCAAAGAAATACTGCCATTATCTCATCAGATATTTGAAAGCTCTTCATTTTCGACTTTGTCCTCTGAAATTTCCACAGTGACTTCGAATCAAGAATCCACACAAGATAGCCCTCCAACACCATTATTCAAGTTTCAAGAAGAACCATATGATCATCATAACAATGGAGATTTTTGGGCTAATCCATTGTTTGAAGCTGAAAATTATTTTGAAGCTGAAAGTGATCAAAACTCAATCAACTTTGGTTTTACTGGAGGCTTCAATCACACTTATGATTTTGAGTTACTTGATGAAAACTACTTGTTAGATCAAGCAATGAAAGAATTGCCTGAAAATTATCAATCCCAATTGTATCTCTTTTGA

mRNA sequence

ATGGCCCTTTGGGTGAGCTGTAGAGATGGACTATACCATAACTTACAAATGACTTCGAATCAAGAATCCACACAAGATAGCCCTCCAACACCATTATTCAAGTTTCAAGAAGAACCATATGATCATCATAACAATGGAGATTTTTGGGCTAATCCATTGTTTGAAGCTGAAAATTATTTTGAAGCTGAAAGTGATCAAAACTCAATCAACTTTGGTTTTACTGGAGGCTTCAATCACACTTATGATTTTGAGTTACTTGATGAAAACTACTTGTTAGATCAAGCAATGAAAGAATTGCCTGAAAATTATCAATCCCAATTGTATCTCTTTTGA

Coding sequence (CDS)

ATGGCCCTTTGGGTGAGCTGTAGAGATGGACTATACCATAACTTACAAATGACTTCGAATCAAGAATCCACACAAGATAGCCCTCCAACACCATTATTCAAGTTTCAAGAAGAACCATATGATCATCATAACAATGGAGATTTTTGGGCTAATCCATTGTTTGAAGCTGAAAATTATTTTGAAGCTGAAAGTGATCAAAACTCAATCAACTTTGGTTTTACTGGAGGCTTCAATCACACTTATGATTTTGAGTTACTTGATGAAAACTACTTGTTAGATCAAGCAATGAAAGAATTGCCTGAAAATTATCAATCCCAATTGTATCTCTTTTGA

Protein sequence

MALWVSCRDGLYHNLQMTSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGGFNHTYDFELLDENYLLDQAMKELPENYQSQLYLF
Homology
[Close]
BLAST of CsGy7G003820.1 vs. NCBI nr
Match: XP_004137010.1 (PREDICTED: transcription repressor MYB6-like [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.0e-47
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 17  MTSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGG 76
           +TSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGG
Sbjct: 178 VTSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGG 237

Query: 77  FNHTYDFELLDENYLLDQAMKELPENYQSQLYLF 111
           FNHTYDFELLDENYLLDQAMKELPENYQSQLYLF
Sbjct: 238 FNHTYDFELLDENYLLDQAMKELPENYQSQLYLF 271

[Close]
BLAST of CsGy7G003820.1 vs. NCBI nr
Match: XP_008455365.1 (PREDICTED: transcription factor WER-like isoform X2 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 7.7e-40
Identity = 82/94 (87.23%), Postives = 83/94 (88.30%), Query Frame = 0 

Query: 17  MTSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGG 76
           +TSNQESTQDSPPTPLFKFQEEPYDHHNNGD W NPLF AENY EAESDQN INFGF GG
Sbjct: 178 VTSNQESTQDSPPTPLFKFQEEPYDHHNNGDLWVNPLFVAENYLEAESDQNPINFGFIGG 237

Query: 77  FNHTYDFELLDENYLLDQAMKELPENYQSQLYLF 111
           FN  YDFELLDENYL  QAMKELPENYQSQLY F
Sbjct: 238 FNQPYDFELLDENYLFCQAMKELPENYQSQLYPF 271

[Close]
BLAST of CsGy7G003820.1 vs. NCBI nr
Match: XP_023554593.1 (transcription factor MYB4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 51/90 (56.67%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 19  SNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGGFN 78
           SNQESTQDSPPT  FKFQE    ++NNGDFW  P F  +N  EA+S QN +       F+
Sbjct: 169 SNQESTQDSPPT-TFKFQEA--SNNNNGDFWDVP-FLVDN-LEAQS-QNPM------FFH 228

Query: 79  HTYDFELLDENYLLDQAMKELPENYQSQLY 109
             YDFE  DE  L  Q MKELPENYQ  LY
Sbjct: 229 VNYDFE-FDEADLFYQVMKELPENYQPYLY 245

[Close]
BLAST of CsGy7G003820.1 vs. NCBI nr
Match: XP_022952680.1 (transcription factor MYB58-like [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 48/90 (53.33%), Postives = 54/90 (60.00%), Query Frame = 0 

Query: 19  SNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGGFN 78
           SNQESTQDSPPT  FKFQE    ++NNGDFW  P F  +N  EA+S            F+
Sbjct: 169 SNQESTQDSPPT-TFKFQET--SNNNNGDFWDVP-FLVDN-LEAQSQDPMF-------FH 228

Query: 79  HTYDFELLDENYLLDQAMKELPENYQSQLY 109
             YDFE  D+  L  Q MKELPENYQ  LY
Sbjct: 229 INYDFE-FDQADLFYQVMKELPENYQPYLY 245

[Close]
BLAST of CsGy7G003820.1 vs. NCBI nr
Match: XP_022969236.1 (transcription factor MYB4-like [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 48/90 (53.33%), Postives = 54/90 (60.00%), Query Frame = 0 

Query: 19  SNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGGFN 78
           SNQESTQDSPPT  FKFQE    ++NNGDFW  P F  +N  EA+S            F+
Sbjct: 170 SNQESTQDSPPT-TFKFQET--SNNNNGDFWDVP-FLVDN-LEAQSQDPMF-------FH 229

Query: 79  HTYDFELLDENYLLDQAMKELPENYQSQLY 109
             YDFE  D+  L  Q MKELPENYQ  LY
Sbjct: 230 VNYDFE-FDQADLFYQVMKELPENYQPYLY 246

[Close]
BLAST of CsGy7G003820.1 vs. TrEMBL
Match: tr|A0A1S3C0B0|A0A1S3C0B0_CUCME (transcription factor WER-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495551 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.1e-40
Identity = 82/94 (87.23%), Postives = 83/94 (88.30%), Query Frame = 0 

Query: 17  MTSNQESTQDSPPTPLFKFQEEPYDHHNNGDFWANPLFEAENYFEAESDQNSINFGFTGG 76
           +TSNQESTQDSPPTPLFKFQEEPYDHHNNGD W NPLF AENY EAESDQN INFGF GG
Sbjct: 178 VTSNQESTQDSPPTPLFKFQEEPYDHHNNGDLWVNPLFVAENYLEAESDQNPINFGFIGG 237

Query: 77  FNHTYDFELLDENYLLDQAMKELPENYQSQLYLF 111
           FN  YDFELLDENYL  QAMKELPENYQSQLY F
Sbjct: 238 FNQPYDFELLDENYLFCQAMKELPENYQSQLYPF 271

The following BLAST results are available for this feature:
BLAST of CsGy7G003820.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137010.11.0e-4798.94PREDICTED: transcription repressor MYB6-like [Cucumis sativus][more]
XP_008455365.17.7e-4087.23PREDICTED: transcription factor WER-like isoform X2 [Cucumis melo][more]
XP_023554593.11.6e-0856.67transcription factor MYB4-like [Cucurbita pepo subsp. pepo][more]
XP_022952680.13.5e-0853.33transcription factor MYB58-like [Cucurbita moschata][more]
XP_022969236.13.5e-0853.33transcription factor MYB4-like [Cucurbita maxima][more]
BLAST of CsGy7G003820.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy7G003820.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy7G003820.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C0B0|A0A1S3C0B0_CUCME5.1e-4087.23transcription factor WER-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495551... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy7G003820CsGy7G003820gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy7G003820.1CsGy7G003820.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy7G003820.1.exon.1CsGy7G003820.1.exon.1exon
CsGy7G003820.1.exon.2CsGy7G003820.1.exon.2exon
CsGy7G003820.1.exon.3CsGy7G003820.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy7G003820.1.CDS.1CsGy7G003820.1.CDS.1CDS
CsGy7G003820.1.CDS.2CsGy7G003820.1.CDS.2CDS
CsGy7G003820.1.CDS.3CsGy7G003820.1.CDS.3CDS


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..37