CmaCh20G006540 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G006540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Myb-like DNA-binding domain protein
Location	Cma_Chr20 : 3018046 .. 3019747 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTGTAAGCTTCTTGGCTCAGCTCATCCCCACTCCACGCGGATTGTGTCTGCTGTCGGATCCTTGTGAAGTTGTTGATTTAAATTCAGTCCCCTATAGCACCACTCCAAGCTCGCTCACCCACTCTCTTGGTGTCTCTGTTGGTGAAGAAAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTGAGGAGAGGTGCGTGGAGCTTTGAAGAAGATGAAAAGCTTAGAGCTTATGTTCAGAGATATGGCCCTTCCAAATGGCGGGAGCTTCCCACGCTTGCAGGTACTCTTATCCATCTTTAGCTACTTATAAACATGGGTTTTTGAAAAGGATTCTGATTTGGGTTTTGGTATTTGTAGGGCTGACCCGATGTGGAAAGAGTTGTAGATTGCGATGGTTGAATTATCTTCGTCCGGGTATTAAGCGAGGGAATTACACAGATGAAGAGAATGACTTAATCTGCAATCTCCATAAGAAACATGGCAATAGGTATCGAGATTAATTGGGTCTAGTGGGTGCTTCTAAAATGATACGATATTGTCCACTTTGAGTATAAGTAGTCTTATGGAATTTCTTTTGGTGTCTCGTACTGATGGATGAAGATAGTGTTCCTTACTTATAAACCCATAATCAACCCTTTAATTGAGTCTCGACTCATGTTTTAGAGCCTTCGAATAAAGTATATCATTTGTTAGACACTTGAGTCACTTTTGACTATACTCATCTCTCGATGATCCTCCCCTTGAACAAAGTACATCATAGAGTTTCTTCTGAAGCCCTCGAACAACCTCCCCTTAATCAAAGCTCACTCCTTTTCTAGAATACTTAGAATAAAGTACACCCTTTGTTTACACTAGAGTCACATTTTGATTAGTTGATGTGAGACTCCTCTCTCAACAATCCTCCCTAGAACAAAGTACATCATAGAGCTTCCTCCGAGGCCTACAGAGCACTCGAACAACCTCTCTTTAATCGAGGCTCTACTCCTCTATAACTCTCGAACAAAGTACACTCTTTGTTCGACACTTGAATCACTTTTGACTACACCTTTGAGACTCACAACTTCTTTGTTCGACACTCAAGGATTCTATAGTATGATATTGTCTACTTTGAGTGTAAGCTCTCATGGCTCTCATATCAATAGAGATAGTGTACCTTACTTATAAACACATGACCAACCTCTTAATTAGCTAACGTGGGACCCCTCTCCTAACACAAACTATTATATTAATATGGAAAATTAATTGTTTATATTCTTAATGTATAGATGGTCGACCATCGATGCAAAACTACCGGGAAGAACAGACAACGAAATAAAGAACCATTGGAACGCACACCTAAAGAAGCAACAATCATCCACTCAACCAAAACCAAAGCAATTAACATCCCAAGTGATTGAAGCAAAAAGAGAAGACTTTACGGGCTATTCCTCCACCACATTTGGGATTCTAGAGAGCTCATCTTTGTCCCAACAAACATCTTCATGCGATGACAATTTCGCCACCCAAAATTGGGGAGTGGAAGATCATGATCGAAGTGGGTACTACGAAGATTTCTGGACTGAACCGTGCGTGAGTGATGTTCTTGATGGGTGCTTAGAATTCTCAGCAGACTATGGAATTGGTATCTTTTCGCCACAACATGATGCGAGCTACGATGATAATTACATAGATTTGTTCTGCTCCTTACTGTAA

mRNA sequence

ATGGGTCTTGTAAGCTTCTTGGCTCAGCTCATCCCCACTCCACGCGGATTGTGTCTGCTGTCGGATCCTTGTGAATCCCCTATAGCACCACTCCAAGCTCGCTCACCCACTCTCTTGGTGTCTCTGTTGGTGAAGAAAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTGAGGAGAGGTGCGTGGAGCTTTGAAGAAGATGAAAAGCTTAGAGCTTATGTTCAGAGATATGGCCCTTCCAAATGGCGGGAGCTTCCCACGCTTGCAGGGCTGACCCGATGTGGAAAGAGTTGTAGATTGCGATGGTTGAATTATCTTCGTCCGGACAACGAAATAAAGAACCATTGGAACGCACACCTAAAGAAGCAACAATCATCCACTCAACCAAAACCAAAGCAATTAACATCCCAAGTGATTGAAGCAAAAAGAGAAGACTTTACGGGCTATTCCTCCACCACATTTGGGATTCTAGAGAGCTCATCTTTGTCCCAACAAACATCTTCATGCGATGACAATTTCGCCACCCAAAATTGGGGAGTGGAAGATCATGATCGAAGTGGGTACTACGAAGATTTCTGGACTGAACCGTGCGTGAGTGATGTTCTTGATGGGTGCTTAGAATTCTCAGCAGACTATGGAATTGGTATCTTTTCGCCACAACATGATGCGAGCTACGATGATAATTACATAGATTTGTTCTGCTCCTTACTGTAA

Coding sequence (CDS)

ATGGGTCTTGTAAGCTTCTTGGCTCAGCTCATCCCCACTCCACGCGGATTGTGTCTGCTGTCGGATCCTTGTGAATCCCCTATAGCACCACTCCAAGCTCGCTCACCCACTCTCTTGGTGTCTCTGTTGGTGAAGAAAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTGAGGAGAGGTGCGTGGAGCTTTGAAGAAGATGAAAAGCTTAGAGCTTATGTTCAGAGATATGGCCCTTCCAAATGGCGGGAGCTTCCCACGCTTGCAGGGCTGACCCGATGTGGAAAGAGTTGTAGATTGCGATGGTTGAATTATCTTCGTCCGGACAACGAAATAAAGAACCATTGGAACGCACACCTAAAGAAGCAACAATCATCCACTCAACCAAAACCAAAGCAATTAACATCCCAAGTGATTGAAGCAAAAAGAGAAGACTTTACGGGCTATTCCTCCACCACATTTGGGATTCTAGAGAGCTCATCTTTGTCCCAACAAACATCTTCATGCGATGACAATTTCGCCACCCAAAATTGGGGAGTGGAAGATCATGATCGAAGTGGGTACTACGAAGATTTCTGGACTGAACCGTGCGTGAGTGATGTTCTTGATGGGTGCTTAGAATTCTCAGCAGACTATGGAATTGGTATCTTTTCGCCACAACATGATGCGAGCTACGATGATAATTACATAGATTTGTTCTGCTCCTTACTGTAA

Protein sequence

MGLVSFLAQLIPTPRGLCLLSDPCESPIAPLQARSPTLLVSLLVKKMVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLRPDNEIKNHWNAHLKKQQSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDHDRSGYYEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDNYIDLFCSLL

Homology

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BLAST of CmaCh20G006540 vs. Swiss-Prot
Match: MY122_ARATH (Transcription factor MYB122 OS=Arabidopsis thaliana GN=MYB122 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.9e-19
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVR P    +G+++GAW+ EED+KL AYVQR+G   WR LP  AGL RCGKSCRLRW NY
Sbjct: 1   MVRTPCCRAEGLKKGAWTQEEDQKLIAYVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANY 60

Query: 107 LRPD 111
           LRPD
Sbjct: 61  LRPD 64

[Close]

BLAST of CmaCh20G006540 vs. Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.9e-19
Identity = 50/116 (43.10%), Postives = 61/116 (52.59%), Query Frame = 1


Query: 47  MVRAPVVDKD-GVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLN 106
           M R+P  D+D GV++G W  EED+KL AY+   G   WR LP LAGL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMN 60

Query: 107 YLRP-------------------------------------DNEIKNHWNAHLKKQ 125
           YLRP                                     DNEIKN+WN H++K+
Sbjct: 61  YLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKK 116

[Close]

BLAST of CmaCh20G006540 vs. Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-19
Identity = 50/120 (41.67%), Postives = 63/120 (52.50%), Query Frame = 1


Query: 49  RAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLR 108
           RAP   K G+ RG+W+ +ED +L AY+Q++G + WR LP  AGL RCGKSCRLRW+NYLR
Sbjct: 5   RAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLR 64

Query: 109 P-------------------------------------DNEIKNHWNAHLKKQQSSTQPK 132
           P                                     DNEIKN WN HLKK+ +  + K
Sbjct: 65  PDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKK 124

[Close]

BLAST of CmaCh20G006540 vs. Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M R+P  +KD   +GAW+ EED+KL +Y++ +G   WR LP  AGL RCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ 125
           LRP                                     DNEIKN+WN H+K++
Sbjct: 61  LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRK 115

[Close]

BLAST of CmaCh20G006540 vs. Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.8e-18
Identity = 49/115 (42.61%), Postives = 59/115 (51.30%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M R P  DK GV++G W+ EED+KL +++   G   WR +P LAGL RCGKSCRLRW NY
Sbjct: 1   MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ 125
           LRP                                     DNEIKNHWN H+KK+
Sbjct: 61  LRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115

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BLAST of CmaCh20G006540 vs. TrEMBL
Match: A0A0A0KAD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121970 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.3e-57
Identity = 137/244 (56.15%), Postives = 159/244 (65.16%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAPVVDKDGV+RGAWS EED+KLRAY+++YGP KWRE+P LAGL RCGKSCRLRWLNY
Sbjct: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ----- 166
           LRP                                     DNE+KN+WNAHLKKQ     
Sbjct: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKT 146

Query: 167 QSST--QPKPKQLT-SQVIEAK-REDFTGYSSTTFGILESSS-LSQQTSSCDDNFATQ-N 226
           +SST  + KPK L+ S V EAK  +DF  Y S+TFGILESSS LSQQTSS DDNF T  N
Sbjct: 147 ESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTSSSDDNFGTVIN 206

Query: 227 WGVEDHD-----RSGYYEDFWTEPCVSDVLDGCLEFSADYGIGIFSP--QHDASYDDNYI 236
           W +ED++      SGYY+DFWTEP V D  +    FS DYGI +FSP  Q++ +YD NY 
Sbjct: 207 WRMEDYNIDQLQISGYYDDFWTEPYVWD-HNETNAFSVDYGIEMFSPQQQYETAYDHNYC 266

[Close]

BLAST of CmaCh20G006540 vs. TrEMBL
Match: A0A067JXL7_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_26464 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.8e-28
Identity = 101/259 (39.00%), Postives = 127/259 (49.03%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAP  DK+G+++GAWS EED+KLRAYVQRYG   WRELP  AGL+RCGKSCRLRW+NY
Sbjct: 1   MVRAPFFDKNGLKKGAWSQEEDDKLRAYVQRYGHWNWRELPKFAGLSRCGKSCRLRWINY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHL----KKQQ 166
           LRP                                     DNEIKN+W++HL    KK +
Sbjct: 61  LRPGVKHGNYSKEEEDLIIRLHEQFGNKWSKIAAKLPGRTDNEIKNYWHSHLKRRAKKSE 120

Query: 167 SSTQPKPKQLT------SQVIEAKREDFTGYSSTTFGILESSSLSQQTS----------- 226
           SS   K +  T      SQ    K E +   +  +  ILES  LS + S           
Sbjct: 121 SSNGMKEQCSTETLCEVSQTRNLKIESYIAKTPYSHPILESYPLSAEPSSSEVSHLSSAD 180

Query: 227 SCDDNFATQNWGVED---------HDRSGYYEDFWTEPCVSDVLDGCLEFSADYGIGIFS 239
           SC    +  +  VED          D SG   DFWT+P V+D  DG +    D G   F+
Sbjct: 181 SCLVTASATSCNVEDRVSYSFETFEDTSG---DFWTQPFVAD-QDGYILSVLDGG---FT 240

[Close]

BLAST of CmaCh20G006540 vs. TrEMBL
Match: V7AG66_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G109800g PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.2e-28
Identity = 87/228 (38.16%), Postives = 112/228 (49.12%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVR P  DK+G+++GAWS EED+KLRAYVQ YG S WR+LP  AGL RCGKSCRLRWLNY
Sbjct: 1   MVRTPSYDKNGLKKGAWSREEDDKLRAYVQIYGHSNWRQLPKFAGLARCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQQSSTQ 166
           LRP                                     DNE+KN+W++HLKK   S +
Sbjct: 61  LRPNLKHGNYTTEEEETIIKLHQEFGNRWSLIAEKLPGRTDNEVKNYWHSHLKKSLKSNE 120

Query: 167 PKPKQLTSQVIEA----KREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDH- 226
             P +L S+  E+    K E+    S   F  +  SSL++      DN+       ED  
Sbjct: 121 MTPSELKSKPNESFEYEKSENLGANSGDIFPHILESSLAR------DNYLATTNAEEDGV 180

[Close]

BLAST of CmaCh20G006540 vs. TrEMBL
Match: A0A067JNK2_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_03738 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 89/237 (37.55%), Postives = 111/237 (46.84%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVR   VDK+G+++GAWS EED+KLRAY+ + G   WRELP  AGL+RCGKSCRLRW+NY
Sbjct: 1   MVRTASVDKNGLKKGAWSREEDDKLRAYIMKRGHCNWRELPKFAGLSRCGKSCRLRWVNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKK-----Q 166
           LRP                                     DNEIKNHW+  LKK      
Sbjct: 61  LRPGVKHGNFSEEEENLIIQLHQELGNKWSRIAMKLPGRTDNEIKNHWHTRLKKLLLEQT 120

Query: 167 QSSTQPKPKQLT----SQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWG 226
           Q +T+   +Q +    SQ IEA+  D     S    ILESS LS + S       + N  
Sbjct: 121 QVATEQVKEQSSEIPPSQNIEAESVDIAVTPSLPI-ILESSPLSNEISDYSSVQTSSNCV 180

Query: 227 VED----HDRSGYY----EDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDN 230
            ED        G +    EDFWT P V D +         Y    ++  +   YDDN
Sbjct: 181 AEDAHSFTSMMGIFEETGEDFWTAPFVEDHI---------YNQDFYASSYSLYYDDN 227

[Close]

BLAST of CmaCh20G006540 vs. TrEMBL
Match: A0A0B2S367_GLYSO (Myb-related protein Myb4 OS=Glycine soja GN=glysoja_017220 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 88/246 (35.77%), Postives = 117/246 (47.56%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAP  DK+G+++GAWS EEDEKL AYV+R+G S WR+LP  AGL RCGKSCRLRWLNY
Sbjct: 1   MVRAPFYDKNGLKKGAWSREEDEKLTAYVKRHGHSNWRQLPKFAGLARCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQQSS-- 166
           LRP                                     DNE+KN+W+ HLKK +S+  
Sbjct: 61  LRPNLKHGNYTLEEEKIIIKLHQEFGNKWSLIAEKLPGRTDNEVKNYWHGHLKKIKSNEI 120

Query: 167 TQPKPKQLTSQVIEAKRED----------FTGYSSTTFGILESS-SLSQQTSSCDDNFA- 226
           T  K K      IE    +          +         ILESS ++S++++S  DN++ 
Sbjct: 121 TTSKLKSKPGYSIEVNSNETHQCEKSESPYADVGDDFPYILESSLAMSRESTSEGDNYSL 180

[Close]

BLAST of CmaCh20G006540 vs. TAIR10
Match: AT5G10280.1 (AT5G10280.1 myb domain protein 92)

HSP 1 Score: 101.7 bits (252), Expect = 6.5e-22
Identity = 52/115 (45.22%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M R+P+ D  G+++G W+ +EDEKL  YVQ++G S WR LP LAGL RCGKSCRLRW NY
Sbjct: 1   MGRSPISDDSGLKKGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ 125
           LRP                                     DNEIKN WN HLKK+
Sbjct: 61  LRPDIKRGRFSPDEEQTILNLHSVLGNKWSTIANQLPGRTDNEIKNFWNTHLKKK 115

[Close]

BLAST of CmaCh20G006540 vs. TAIR10
Match: AT4G17785.1 (AT4G17785.1 myb domain protein 39)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-20
Identity = 50/116 (43.10%), Postives = 61/116 (52.59%), Query Frame = 1


Query: 47  MVRAPVVDKD-GVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLN 106
           M R+P  D+D GV++G W  EED+KL AY+   G   WR LP LAGL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMN 60

Query: 107 YLRP-------------------------------------DNEIKNHWNAHLKKQ 125
           YLRP                                     DNEIKN+WN H++K+
Sbjct: 61  YLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKK 116

[Close]

BLAST of CmaCh20G006540 vs. TAIR10
Match: AT1G74080.1 (AT1G74080.1 myb domain protein 122)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-20
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVR P    +G+++GAW+ EED+KL AYVQR+G   WR LP  AGL RCGKSCRLRW NY
Sbjct: 1   MVRTPCCRAEGLKKGAWTQEEDQKLIAYVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANY 60

Query: 107 LRPD 111
           LRPD
Sbjct: 61  LRPD 64

[Close]

BLAST of CmaCh20G006540 vs. TAIR10
Match: AT4G34990.1 (AT4G34990.1 myb domain protein 32)

HSP 1 Score: 95.1 bits (235), Expect = 6.1e-20
Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M R+P  +KD   +GAW+ EED+KL +Y++ +G   WR LP  AGL RCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ 125
           LRP                                     DNEIKN+WN H+K++
Sbjct: 61  LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRK 115

[Close]

BLAST of CmaCh20G006540 vs. TAIR10
Match: AT3G23250.1 (AT3G23250.1 myb domain protein 15)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-19
Identity = 52/125 (41.60%), Postives = 65/125 (52.00%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           M RAP  +K G++RG W+ EED+ L +++  +G S WR LP  AGL RCGKSCRLRW+NY
Sbjct: 1   MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQQSSTQ 134
           L+P                                     DNEIKN W+ HLKK+    Q
Sbjct: 61  LKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLEDYQ 120

[Close]

BLAST of CmaCh20G006540 vs. NCBI nr
Match: gi|659094749|ref|XP_008448223.1| (PREDICTED: transcription repressor MYB6-like [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 3.4e-57
Identity = 135/245 (55.10%), Postives = 160/245 (65.31%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAPVVDKDGV+RGAWS EED+KLRAY+++YGP KWRE+PTLAGL RCGKSCRLRWLNY
Sbjct: 29  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPTLAGLMRCGKSCRLRWLNY 88

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ----- 166
           LRP                                     DNE+KNHWNAHLKKQ     
Sbjct: 89  LRPGLKRGNYTNEENELICKLHQKYGNRWSTIAAKLPGRTDNEVKNHWNAHLKKQVKPKT 148

Query: 167 QSST---QPKPKQL-TSQVIEAK-REDFTGYSSTTFGILESSS-LSQQTSSCDDNFATQ- 226
           +SST   + KPK+L  S V EAK  +DF  Y S+TFGI+ESSS  SQ+TSS DDNF T+ 
Sbjct: 149 ESSTIKHEGKPKELRLSHVYEAKTSKDFAEYCSSTFGIVESSSCFSQETSSSDDNFGTEI 208

Query: 227 NWGVEDHDRS-----GYYEDFWTEPCVSDVLDGCLEFSADYGIGIFSP--QHDASYDDNY 236
           NWG+ED++       GYY++FWTEP V D  +    FS DYGI +FSP  Q++ +YD NY
Sbjct: 209 NWGMEDYNIDQLQICGYYDNFWTEPYVWD-HNQTNAFSEDYGIRMFSPQQQYETTYDHNY 268

[Close]

BLAST of CmaCh20G006540 vs. NCBI nr
Match: gi|778712704|ref|XP_004140052.2| (PREDICTED: transcription repressor MYB6-like [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 7.7e-57
Identity = 137/244 (56.15%), Postives = 159/244 (65.16%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAPVVDKDGV+RGAWS EED+KLRAY+++YGP KWRE+P LAGL RCGKSCRLRWLNY
Sbjct: 27  MVRAPVVDKDGVKRGAWSLEEDQKLRAYIEKYGPWKWREVPRLAGLMRCGKSCRLRWLNY 86

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQ----- 166
           LRP                                     DNE+KN+WNAHLKKQ     
Sbjct: 87  LRPGLKRGNYTNEENELICKLHQTHGNRWSTIAAKLPGRTDNEVKNYWNAHLKKQVKPKT 146

Query: 167 QSST--QPKPKQLT-SQVIEAK-REDFTGYSSTTFGILESSS-LSQQTSSCDDNFATQ-N 226
           +SST  + KPK L+ S V EAK  +DF  Y S+TFGILESSS LSQQTSS DDNF T  N
Sbjct: 147 ESSTKHEGKPKDLSLSHVYEAKTSKDFAEYCSSTFGILESSSCLSQQTSSSDDNFGTVIN 206

Query: 227 WGVEDHD-----RSGYYEDFWTEPCVSDVLDGCLEFSADYGIGIFSP--QHDASYDDNYI 236
           W +ED++      SGYY+DFWTEP V D  +    FS DYGI +FSP  Q++ +YD NY 
Sbjct: 207 WRMEDYNIDQLQISGYYDDFWTEPYVWD-HNETNAFSVDYGIEMFSPQQQYETAYDHNYC 266

[Close]

BLAST of CmaCh20G006540 vs. NCBI nr
Match: gi|802749940|ref|XP_012087685.1| (PREDICTED: myb-related protein Myb4-like [Jatropha curcas])

HSP 1 Score: 134.4 bits (337), Expect = 2.6e-28
Identity = 101/259 (39.00%), Postives = 127/259 (49.03%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVRAP  DK+G+++GAWS EED+KLRAYVQRYG   WRELP  AGL+RCGKSCRLRW+NY
Sbjct: 1   MVRAPFFDKNGLKKGAWSQEEDDKLRAYVQRYGHWNWRELPKFAGLSRCGKSCRLRWINY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHL----KKQQ 166
           LRP                                     DNEIKN+W++HL    KK +
Sbjct: 61  LRPGVKHGNYSKEEEDLIIRLHEQFGNKWSKIAAKLPGRTDNEIKNYWHSHLKRRAKKSE 120

Query: 167 SSTQPKPKQLT------SQVIEAKREDFTGYSSTTFGILESSSLSQQTS----------- 226
           SS   K +  T      SQ    K E +   +  +  ILES  LS + S           
Sbjct: 121 SSNGMKEQCSTETLCEVSQTRNLKIESYIAKTPYSHPILESYPLSAEPSSSEVSHLSSAD 180

Query: 227 SCDDNFATQNWGVED---------HDRSGYYEDFWTEPCVSDVLDGCLEFSADYGIGIFS 239
           SC    +  +  VED          D SG   DFWT+P V+D  DG +    D G   F+
Sbjct: 181 SCLVTASATSCNVEDRVSYSFETFEDTSG---DFWTQPFVAD-QDGYILSVLDGG---FT 240

[Close]

BLAST of CmaCh20G006540 vs. NCBI nr
Match: gi|593221891|ref|XP_007132613.1| (hypothetical protein PHAVU_011G109800g [Phaseolus vulgaris])

HSP 1 Score: 132.9 bits (333), Expect = 7.5e-28
Identity = 87/228 (38.16%), Postives = 112/228 (49.12%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVR P  DK+G+++GAWS EED+KLRAYVQ YG S WR+LP  AGL RCGKSCRLRWLNY
Sbjct: 1   MVRTPSYDKNGLKKGAWSREEDDKLRAYVQIYGHSNWRQLPKFAGLARCGKSCRLRWLNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKKQQSSTQ 166
           LRP                                     DNE+KN+W++HLKK   S +
Sbjct: 61  LRPNLKHGNYTTEEEETIIKLHQEFGNRWSLIAEKLPGRTDNEVKNYWHSHLKKSLKSNE 120

Query: 167 PKPKQLTSQVIEA----KREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDH- 226
             P +L S+  E+    K E+    S   F  +  SSL++      DN+       ED  
Sbjct: 121 MTPSELKSKPNESFEYEKSENLGANSGDIFPHILESSLAR------DNYLATTNAEEDGV 180

[Close]

BLAST of CmaCh20G006540 vs. NCBI nr
Match: gi|802778743|ref|XP_012091229.1| (PREDICTED: myb-related protein Myb4-like [Jatropha curcas])

HSP 1 Score: 124.4 bits (311), Expect = 2.7e-25
Identity = 89/237 (37.55%), Postives = 111/237 (46.84%), Query Frame = 1


Query: 47  MVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNY 106
           MVR   VDK+G+++GAWS EED+KLRAY+ + G   WRELP  AGL+RCGKSCRLRW+NY
Sbjct: 1   MVRTASVDKNGLKKGAWSREEDDKLRAYIMKRGHCNWRELPKFAGLSRCGKSCRLRWVNY 60

Query: 107 LRP-------------------------------------DNEIKNHWNAHLKK-----Q 166
           LRP                                     DNEIKNHW+  LKK      
Sbjct: 61  LRPGVKHGNFSEEEENLIIQLHQELGNKWSRIAMKLPGRTDNEIKNHWHTRLKKLLLEQT 120

Query: 167 QSSTQPKPKQLT----SQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWG 226
           Q +T+   +Q +    SQ IEA+  D     S    ILESS LS + S       + N  
Sbjct: 121 QVATEQVKEQSSEIPPSQNIEAESVDIAVTPSLPI-ILESSPLSNEISDYSSVQTSSNCV 180

Query: 227 VED----HDRSGYY----EDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDN 230
            ED        G +    EDFWT P V D +         Y    ++  +   YDDN
Sbjct: 181 AEDAHSFTSMMGIFEETGEDFWTAPFVEDHI---------YNQDFYASSYSLYYDDN 227

The following BLAST results are available for this feature:

BLAST of CmaCh20G006540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MY122_ARATH	4.9e-19	65.63	Transcription factor MYB122 OS=Arabidopsis thaliana GN=MYB122 PE=1 SV=1	[more]
MYB39_ARATH	4.9e-19	43.10	Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1	[more]
MYB1_MAIZE	6.3e-19	41.67	Myb-related protein Zm1 OS=Zea mays PE=2 SV=1	[more]
MYB32_ARATH	1.1e-18	40.87	Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1	[more]
ODO1_PETHY	1.8e-18	42.61	Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1	[more]

BLAST of CmaCh20G006540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAD1_CUCSA	5.3e-57	56.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121970 PE=4 SV=1	[more]
A0A067JXL7_JATCU	1.8e-28	39.00	MYB family protein OS=Jatropha curcas GN=JCGZ_26464 PE=4 SV=1	[more]
V7AG66_PHAVU	5.2e-28	38.16	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G109800g PE=4 SV=1	[more]
A0A067JNK2_JATCU	1.9e-25	37.55	MYB family protein OS=Jatropha curcas GN=JCGZ_03738 PE=4 SV=1	[more]
A0A0B2S367_GLYSO	1.2e-24	35.77	Myb-related protein Myb4 OS=Glycine soja GN=glysoja_017220 PE=4 SV=1	[more]

BLAST of CmaCh20G006540 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10280.1	6.5e-22	45.22	myb domain protein 92	[more]
AT4G17785.1	2.7e-20	43.10	myb domain protein 39	[more]
AT1G74080.1	2.7e-20	65.63	myb domain protein 122	[more]
AT4G34990.1	6.1e-20	40.87	myb domain protein 32	[more]
AT3G23250.1	1.4e-19	41.60	myb domain protein 15	[more]

BLAST of CmaCh20G006540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094749\|ref\|XP_008448223.1\|	3.4e-57	55.10	PREDICTED: transcription repressor MYB6-like [Cucumis melo]	[more]
gi\|778712704\|ref\|XP_004140052.2\|	7.7e-57	56.15	PREDICTED: transcription repressor MYB6-like [Cucumis sativus]	[more]
gi\|802749940\|ref\|XP_012087685.1\|	2.6e-28	39.00	PREDICTED: myb-related protein Myb4-like [Jatropha curcas]	[more]
gi\|593221891\|ref\|XP_007132613.1\|	7.5e-28	38.16	hypothetical protein PHAVU_011G109800g [Phaseolus vulgaris]	[more]
gi\|802778743\|ref\|XP_012091229.1\|	2.7e-25	37.55	PREDICTED: myb-related protein Myb4-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G006540.1	CmaCh20G006540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 60..107 score: 3.5
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 59..109 score: 7.2
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 58..110 score: 5.5
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 60..122 score: 6.42
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 55..111 score: 21
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 31..110 score: 2.3
None	No IPR available	PANTHER	PTHR10641:SF613	SUBFAMILY NOT NAMED	coord: 31..110 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G006540	Cla007716	Watermelon (97103) v1	cmawmB528
CmaCh20G006540	ClCG02G011350	Watermelon (Charleston Gray)	cmawcgB487
CmaCh20G006540	ClCG02G001410	Watermelon (Charleston Gray)	cmawcgB494
CmaCh20G006540	CmoCh11G019280	Cucurbita moschata (Rifu)	cmacmoB540
CmaCh20G006540	CmoCh02G001360	Cucurbita moschata (Rifu)	cmacmoB561
CmaCh20G006540	Lsi11G015040	Bottle gourd (USVL1VR-Ls)	cmalsiB513
CmaCh20G006540	Cp4.1LG05g14710	Cucurbita pepo (Zucchini)	cmacpeB578
CmaCh20G006540	Cp4.1LG04g03280	Cucurbita pepo (Zucchini)	cmacpeB574
CmaCh20G006540	MELO3C018773.2	Melon (DHL92) v3.6.1	cmamedB590
CmaCh20G006540	Cla97C02G027830	Watermelon (97103) v2	cmawmbB582
CmaCh20G006540	Cla97C02G037050	Watermelon (97103) v2	cmawmbB574
CmaCh20G006540	Carg19206	Silver-seed gourd	carcmaB1215
CmaCh20G006540	Carg13556	Silver-seed gourd	carcmaB0041
CmaCh20G006540	Carg03159	Silver-seed gourd	carcmaB0472

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh20G006540	CmaCh19G009540	Cucurbita maxima (Rimu)	cmacmaB443
CmaCh20G006540	CmaCh02G001350	Cucurbita maxima (Rimu)	cmacmaB477

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G006540	Cucurbita pepo (Zucchini)	cmacpeB562
CmaCh20G006540	Bottle gourd (USVL1VR-Ls)	cmalsiB505
CmaCh20G006540	Melon (DHL92) v3.6.1	cmamedB586
CmaCh20G006540	Wax gourd	cmawgoB0681
CmaCh20G006540	Cucurbita moschata (Rifu)	cmacmoB552
CmaCh20G006540	Watermelon (97103) v1	cmawmB525