CmaCh20G006540.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCTTGTAAGCTTCTTGGCTCAGCTCATCCCCACTCCACGCGGATTGTGTCTGCTGTCGGATCCTTGTGAAGTTGTTGATTTAAATTCAGTCCCCTATAGCACCACTCCAAGCTCGCTCACCCACTCTCTTGGTGTCTCTGTTGGTGAAGAAAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTGAGGAGAGGTGCGTGGAGCTTTGAAGAAGATGAAAAGCTTAGAGCTTATGTTCAGAGATATGGCCCTTCCAAATGGCGGGAGCTTCCCACGCTTGCAGGTACTCTTATCCATCTTTAGCTACTTATAAACATGGGTTTTTGAAAAGGATTCTGATTTGGGTTTTGGTATTTGTAGGGCTGACCCGATGTGGAAAGAGTTGTAGATTGCGATGGTTGAATTATCTTCGTCCGGGTATTAAGCGAGGGAATTACACAGATGAAGAGAATGACTTAATCTGCAATCTCCATAAGAAACATGGCAATAGGTATCGAGATTAATTGGGTCTAGTGGGTGCTTCTAAAATGATACGATATTGTCCACTTTGAGTATAAGTAGTCTTATGGAATTTCTTTTGGTGTCTCGTACTGATGGATGAAGATAGTGTTCCTTACTTATAAACCCATAATCAACCCTTTAATTGAGTCTCGACTCATGTTTTAGAGCCTTCGAATAAAGTATATCATTTGTTAGACACTTGAGTCACTTTTGACTATACTCATCTCTCGATGATCCTCCCCTTGAACAAAGTACATCATAGAGTTTCTTCTGAAGCCCTCGAACAACCTCCCCTTAATCAAAGCTCACTCCTTTTCTAGAATACTTAGAATAAAGTACACCCTTTGTTTACACTAGAGTCACATTTTGATTAGTTGATGTGAGACTCCTCTCTCAACAATCCTCCCTAGAACAAAGTACATCATAGAGCTTCCTCCGAGGCCTACAGAGCACTCGAACAACCTCTCTTTAATCGAGGCTCTACTCCTCTATAACTCTCGAACAAAGTACACTCTTTGTTCGACACTTGAATCACTTTTGACTACACCTTTGAGACTCACAACTTCTTTGTTCGACACTCAAGGATTCTATAGTATGATATTGTCTACTTTGAGTGTAAGCTCTCATGGCTCTCATATCAATAGAGATAGTGTACCTTACTTATAAACACATGACCAACCTCTTAATTAGCTAACGTGGGACCCCTCTCCTAACACAAACTATTATATTAATATGGAAAATTAATTGTTTATATTCTTAATGTATAGATGGTCGACCATCGATGCAAAACTACCGGGAAGAACAGACAACGAAATAAAGAACCATTGGAACGCACACCTAAAGAAGCAACAATCATCCACTCAACCAAAACCAAAGCAATTAACATCCCAAGTGATTGAAGCAAAAAGAGAAGACTTTACGGGCTATTCCTCCACCACATTTGGGATTCTAGAGAGCTCATCTTTGTCCCAACAAACATCTTCATGCGATGACAATTTCGCCACCCAAAATTGGGGAGTGGAAGATCATGATCGAAGTGGGTACTACGAAGATTTCTGGACTGAACCGTGCGTGAGTGATGTTCTTGATGGGTGCTTAGAATTCTCAGCAGACTATGGAATTGGTATCTTTTCGCCACAACATGATGCGAGCTACGATGATAATTACATAGATTTGTTCTGCTCCTTACTGTAA ATGGGTCTTGTAAGCTTCTTGGCTCAGCTCATCCCCACTCCACGCGGATTGTGTCTGCTGTCGGATCCTTGTGAATCCCCTATAGCACCACTCCAAGCTCGCTCACCCACTCTCTTGGTGTCTCTGTTGGTGAAGAAAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTGAGGAGAGGTGCGTGGAGCTTTGAAGAAGATGAAAAGCTTAGAGCTTATGTTCAGAGATATGGCCCTTCCAAATGGCGGGAGCTTCCCACGCTTGCAGGGCTGACCCGATGTGGAAAGAGTTGTAGATTGCGATGGTTGAATTATCTTCGTCCGGACAACGAAATAAAGAACCATTGGAACGCACACCTAAAGAAGCAACAATCATCCACTCAACCAAAACCAAAGCAATTAACATCCCAAGTGATTGAAGCAAAAAGAGAAGACTTTACGGGCTATTCCTCCACCACATTTGGGATTCTAGAGAGCTCATCTTTGTCCCAACAAACATCTTCATGCGATGACAATTTCGCCACCCAAAATTGGGGAGTGGAAGATCATGATCGAAGTGGGTACTACGAAGATTTCTGGACTGAACCGTGCGTGAGTGATGTTCTTGATGGGTGCTTAGAATTCTCAGCAGACTATGGAATTGGTATCTTTTCGCCACAACATGATGCGAGCTACGATGATAATTACATAGATTTGTTCTGCTCCTTACTGTAA ATGGGTCTTGTAAGCTTCTTGGCTCAGCTCATCCCCACTCCACGCGGATTGTGTCTGCTGTCGGATCCTTGTGAATCCCCTATAGCACCACTCCAAGCTCGCTCACCCACTCTCTTGGTGTCTCTGTTGGTGAAGAAAATGGTGCGAGCTCCTGTTGTTGATAAGGATGGAGTGAGGAGAGGTGCGTGGAGCTTTGAAGAAGATGAAAAGCTTAGAGCTTATGTTCAGAGATATGGCCCTTCCAAATGGCGGGAGCTTCCCACGCTTGCAGGGCTGACCCGATGTGGAAAGAGTTGTAGATTGCGATGGTTGAATTATCTTCGTCCGGACAACGAAATAAAGAACCATTGGAACGCACACCTAAAGAAGCAACAATCATCCACTCAACCAAAACCAAAGCAATTAACATCCCAAGTGATTGAAGCAAAAAGAGAAGACTTTACGGGCTATTCCTCCACCACATTTGGGATTCTAGAGAGCTCATCTTTGTCCCAACAAACATCTTCATGCGATGACAATTTCGCCACCCAAAATTGGGGAGTGGAAGATCATGATCGAAGTGGGTACTACGAAGATTTCTGGACTGAACCGTGCGTGAGTGATGTTCTTGATGGGTGCTTAGAATTCTCAGCAGACTATGGAATTGGTATCTTTTCGCCACAACATGATGCGAGCTACGATGATAATTACATAGATTTGTTCTGCTCCTTACTGTAA MGLVSFLAQLIPTPRGLCLLSDPCESPIAPLQARSPTLLVSLLVKKMVRAPVVDKDGVRRGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYLRPDNEIKNHWNAHLKKQQSSTQPKPKQLTSQVIEAKREDFTGYSSTTFGILESSSLSQQTSSCDDNFATQNWGVEDHDRSGYYEDFWTEPCVSDVLDGCLEFSADYGIGIFSPQHDASYDDNYIDLFCSLL
BLAST of CmaCh20G006540.1 vs. Swiss-Prot
Match: MY122_ARATH (Transcription factor MYB122 OS=Arabidopsis thaliana GN=MYB122 PE=1 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 4.9e-19 Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 4.9e-19 Identity = 50/116 (43.10%), Postives = 61/116 (52.59%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 6.3e-19 Identity = 50/120 (41.67%), Postives = 63/120 (52.50%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18 Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.8e-18 Identity = 49/115 (42.61%), Postives = 59/115 (51.30%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. TrEMBL
Match: A0A0A0KAD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121970 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 5.3e-57 Identity = 137/244 (56.15%), Postives = 159/244 (65.16%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. TrEMBL
Match: A0A067JXL7_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_26464 PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 1.8e-28 Identity = 101/259 (39.00%), Postives = 127/259 (49.03%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. TrEMBL
Match: V7AG66_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G109800g PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 5.2e-28 Identity = 87/228 (38.16%), Postives = 112/228 (49.12%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. TrEMBL
Match: A0A067JNK2_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_03738 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25 Identity = 89/237 (37.55%), Postives = 111/237 (46.84%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. TrEMBL
Match: A0A0B2S367_GLYSO (Myb-related protein Myb4 OS=Glycine soja GN=glysoja_017220 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24 Identity = 88/246 (35.77%), Postives = 117/246 (47.56%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. TAIR10
Match: AT5G10280.1 (AT5G10280.1 myb domain protein 92) HSP 1 Score: 101.7 bits (252), Expect = 6.5e-22 Identity = 52/115 (45.22%), Postives = 62/115 (53.91%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. TAIR10
Match: AT4G17785.1 (AT4G17785.1 myb domain protein 39) HSP 1 Score: 96.3 bits (238), Expect = 2.7e-20 Identity = 50/116 (43.10%), Postives = 61/116 (52.59%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. TAIR10
Match: AT1G74080.1 (AT1G74080.1 myb domain protein 122) HSP 1 Score: 96.3 bits (238), Expect = 2.7e-20 Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. TAIR10
Match: AT4G34990.1 (AT4G34990.1 myb domain protein 32) HSP 1 Score: 95.1 bits (235), Expect = 6.1e-20 Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. TAIR10
Match: AT3G23250.1 (AT3G23250.1 myb domain protein 15) HSP 1 Score: 94.0 bits (232), Expect = 1.4e-19 Identity = 52/125 (41.60%), Postives = 65/125 (52.00%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. NCBI nr
Match: gi|659094749|ref|XP_008448223.1| (PREDICTED: transcription repressor MYB6-like [Cucumis melo]) HSP 1 Score: 230.3 bits (586), Expect = 3.4e-57 Identity = 135/245 (55.10%), Postives = 160/245 (65.31%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. NCBI nr
Match: gi|778712704|ref|XP_004140052.2| (PREDICTED: transcription repressor MYB6-like [Cucumis sativus]) HSP 1 Score: 229.2 bits (583), Expect = 7.7e-57 Identity = 137/244 (56.15%), Postives = 159/244 (65.16%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. NCBI nr
Match: gi|802749940|ref|XP_012087685.1| (PREDICTED: myb-related protein Myb4-like [Jatropha curcas]) HSP 1 Score: 134.4 bits (337), Expect = 2.6e-28 Identity = 101/259 (39.00%), Postives = 127/259 (49.03%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. NCBI nr
Match: gi|593221891|ref|XP_007132613.1| (hypothetical protein PHAVU_011G109800g [Phaseolus vulgaris]) HSP 1 Score: 132.9 bits (333), Expect = 7.5e-28 Identity = 87/228 (38.16%), Postives = 112/228 (49.12%), Query Frame = 1
BLAST of CmaCh20G006540.1 vs. NCBI nr
Match: gi|802778743|ref|XP_012091229.1| (PREDICTED: myb-related protein Myb4-like [Jatropha curcas]) HSP 1 Score: 124.4 bits (311), Expect = 2.7e-25 Identity = 89/237 (37.55%), Postives = 111/237 (46.84%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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