ClCG01G010870 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G010870
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	PsbP domain-containing protein 1, chloroplastic
Location	CG_Chr01 : 17035530 .. 17038502 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGGAGAGATTCCTGAAAATGGCTGTGATCCTCGACTCCTTCTTACCTCCAATTCACACACTGAGTTCTTCAATTCGCCAAAGGATTCCCATCACTTCTCCTTCTCCGCGATGGCCTATGGATTCATCCCCCAAATGTCGCTCTGAATCTCAATCGGTAATTCTTCCAAAATCACTTCATAAATTGTAATCAATCTGGAACTTGTTACTTGCATTTATCGCTATAGCTTTCTAATATATAATCAGATTAAAGCCGTTGCAGTTCCAAGGAGGAATGCAATGGCGTTGATCTTCTCCACTTGTATTTTCTCGAATTCTGCGTTGGCTGAGCCATCTCCATCTCCATCTCCATCTCCATCTGTTGGATTATTGGAATACATTGACACTTTTGATGGCTATTCGTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATATTCTTCAGGGATCCGTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCTTCCAGCTATAAGAGCGTTCAGGATTTAGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAGCAGTATTTGACTGAGTTCATGTCTACCAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCCAGAATGGCAGATGATGGAAGAACTTACTACCAAGTTGAGGTAATTTGTGACATACATACACAACTTTGATTCAATTCTACTTTATCTTTTTCTGCATCCATTATGGTGAACAACTTGTTCTTCATCTGCTCATTTGGTTATGAATGTTTAGGTTCATTTTGATTTTGATTTTTGTTTTTGAAAATTAAGTCTAGACTCCATTTTCATTTCATTAGTTGGCCTACATCTCAAGACTGTTTTCAAAATTAAAACTAAAATTTGAAAACTAAAAGAAATTTTTAAAAACTTGTTTTTTTTTAGGAAAAAAAATTGACTAAGAATTCAAATGCTTATATAGAAAATACAAAAACTATGAGTAGACAAAATTTCAAAAACCAAAAATAAAAAACCGAATGGTTACTAACCAAAATCTTAACATCTTAACTTCAACTTTCACCTTTGTGTCAAATAAGTTTCTCGACTTTGACAGGTAACAATAGGTTCTCAAACGTCAATTTTGTATCTAGTAGGTTATTAAAAGATCAAAAACCTAGTTAACATTTTTAAAATATAGGAACTTAATAACTAATCATTGAAAGTTTAAGGTACTAATAAATATGTTTTAAAATGAAAAGATTTATTGAAACTTGTAGTTCACTCAAAAAAGTTGCCTTTTGGTCAGTGTATAATGGCTCTTCCCTGAATCTGTTTAAAACAACCCTTTTGGGTGTTTTTAACCACAGAAATCATTGGCCATGAACCTTAGTAATAAGCAATGGAAAACCATAATGGTGTAAGAGGAACATTCCAAAGATTGTTGTTTGTTGTGAGTTGTGACATTCTAGTTTTCTTTATAGGTACCTATGTGATGTATGATGTTTAAACCTGAAGCATTTCATATTTTTCTCTGCAACTCTGAATTGAACTAACCCATAAGTTATAAGTTCAAGTTAATCTTAATGTCACTTTAGCTTCTTTGATCTCCATTTCTTCAAATGCATCATAACAATCTGCAATCTGCAATCTTACGATTATGTGGGTATCAGGTAAACATAAAGTCATATGCAAACAACAATGAACTGGCAGTAATGCCACAGGATCGGGTGGTTCGTTTGGAATGGGACCGAAGATATCTCTCGGTTCTTGGAGTCGAAAACAGTCGGCTATATGAATTGAGATTACAAACTCCAGAAAACGTGTTCGTAGAAGAAGAAAATGAGTTGCGTCAAGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGAAATGAATTGTTGCAGCCGAGGGTTTTCAGATGTAGTAGCTGAAACATTGTACTCTTCATCATCGAAGCAAATTGATTCTGCATTTTACAGTTTGATATTGGAGTCCTGTCTCACTAATCTAATATTTCTCGATTCCTTGATTAAGTAAAAGTGCACCAAAGATTGACAAAGTATCAATTTCACTGAAACAGGAATCACTTCTGAGCTGCCAAAAGGCATCATTTAAACAAACTTTACAAATGGAAAGATTTTTGGTCTGTTTTCAACTATCATGAGATTGTGCATTGGTTCACAGGATTTCACAGAAGATCGTGCACTCAAGATCATCACAAATTCGCAAATGGGAGTTGCCGCTATTGCTTATGACCGAACTTCGAACTTCCCTGCTCGTGTTAGAGCTCGAAAGCCTTTGTAAGGATGATTTGGCAAGTTCTTCACATCAAGTTTATCTACTTGCAGGCCAGAGAGGACTACACCCATGATCTTAAAACGCACTTGAAATGTGGGAAATACATGAAGCTGTTGTAATCCTGTCTCAAGTGTCCATGTTCCAGACATTGAAGGGGTTTTATCTTTTGGCATCTTTCCAATTGTCCAAGAGCAGATCTGTAGAAACAAATTCTATCCTTTTTAGCTCATCAGAAATAAAACACTATGGGAACTTTAGTATCCTTAAACAAACAAACATACAATTCGGGAACCAACTCCTTTCACTAGACACTAACATAGAAATAAAAGGCAGGAATTTGGGAGAGGTACCAAACACTACAAAGAAACAGCTGCTCATGCTAATGAAGGTACCGAATGCTTTCAGTGTTGCACATCCCAGACCAAAAACAATGCTTTTCTTTTTTAGAACCAAAATCTGAGATGCTTTTTGGGGGCGTGGTCGATAACAAGGAAATCCCAACAAAGAAACTTACATATTCATCATATAAACACCAGATCCTTAACTAGTCAGAAATTGCCAAATACCAATTTTAAAAGCCACTGCAACGAAAATCAACTTAAAAACTCATTTAGAAGAACTCTTCTGGTTGATTAGCAAGTAGGGATGGAATATAACTCCTTGTC

mRNA sequence

GTTTGGAGAGATTCCTGAAAATGGCTGTGATCCTCGACTCCTTCTTACCTCCAATTCACACACTGAGTTCTTCAATTCGCCAAAGGATTCCCATCACTTCTCCTTCTCCGCGATGGCCTATGGATTCATCCCCCAAATGTCGCTCTGAATCTCAATCGATTAAAGCCGTTGCAGTTCCAAGGAGGAATGCAATGGCGTTGATCTTCTCCACTTGTATTTTCTCGAATTCTGCGTTGGCTGAGCCATCTCCATCTCCATCTCCATCTCCATCTGTTGGATTATTGGAATACATTGACACTTTTGATGGCTATTCGTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATATTCTTCAGGGATCCGTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCTTCCAGCTATAAGAGCGTTCAGGATTTAGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAGCAGTATTTGACTGAGTTCATGTCTACCAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCCAGAATGGCAGATGATGGAAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAACTGGCAGTAATGCCACAGGATCGGGTGGTTCGTTTGGAATGGGACCGAAGATATCTCTCGGTTCTTGGAGTCGAAAACAGTCGGCTATATGAATTGAGATTACAAACTCCAGAAAACGTGTTCGTAGAAGAAGAAAATGAGTTGCGTCAAGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGAAATGAATTGTTGCAGCCGAGGGTTTTCAGATGTAGTAGCTGAAACATTGTACTCTTCATCATCGAAGCAAATTGATTCTGCATTTTACAGTTTGATATTGGAGTCCTGTCTCACTAATCTAATATTTCTCGATTCCTTGATTAAGTAAAAGTGCACCAAAGATTGACAAAGTATCAATTTCACTGAAACAGGAATCACTTCTGAGCTGCCAAAAGGCATCATTTAAACAAACTTTACAAATGGAAAGATTTTTGGTCTGTTTTCAACTATCATGAGATTGTGCATTGGTTCACAGGATTTCACAGAAGATCGTGCACTCAAGATCATCACAAATTCGCAAATGGGAGTTGCCGCTATTGCTTATGACCGAACTTCGAACTTCCCTGCTCGTGTTAGAGCTCGAAAGCCTTTGTAAGGATGATTTGGCAAGTTCTTCACATCAAGTTTATCTACTTGCAGGCCAGAGAGGACTACACCCATGATCTTAAAACGCACTTGAAATGTGGGAAATACATGAAGCTGTTGTAATCCTGTCTCAAGTGTCCATGTTCCAGACATTGAAGGGGTTTTATCTTTTGGCATCTTTCCAATTGTCCAAGAGCAGATCTGTAGAAACAAATTCTATCCTTTTTAGCTCATCAGAAATAAAACACTATGGGAACTTTAGTATCCTTAAACAAACAAACATACAATTCGGGAACCAACTCCTTTCACTAGACACTAACATAGAAATAAAAGGCAGGAATTTGGGAGAGGTACCAAACACTACAAAGAAACAGCTGCTCATGCTAATGAAGGTACCGAATGCTTTCAGTGTTGCACATCCCAGACCAAAAACAATGCTTTTCTTTTTTAGAACCAAAATCTGAGATGCTTTTTGGGGGCGTGGTCGATAACAAGGAAATCCCAACAAAGAAACTTACATATTCATCATATAAACACCAGATCCTTAACTAGTCAGAAATTGCCAAATACCAATTTTAAAAGCCACTGCAACGAAAATCAACTTAAAAACTCATTTAGAAGAACTCTTCTGGTTGATTAGCAAGTAGGGATGGAATATAACTCCTTGTC

Coding sequence (CDS)

ATGGCTGTGATCCTCGACTCCTTCTTACCTCCAATTCACACACTGAGTTCTTCAATTCGCCAAAGGATTCCCATCACTTCTCCTTCTCCGCGATGGCCTATGGATTCATCCCCCAAATGTCGCTCTGAATCTCAATCGATTAAAGCCGTTGCAGTTCCAAGGAGGAATGCAATGGCGTTGATCTTCTCCACTTGTATTTTCTCGAATTCTGCGTTGGCTGAGCCATCTCCATCTCCATCTCCATCTCCATCTGTTGGATTATTGGAATACATTGACACTTTTGATGGCTATTCGTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATATTCTTCAGGGATCCGTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCTTCCAGCTATAAGAGCGTTCAGGATTTAGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAGCAGTATTTGACTGAGTTCATGTCTACCAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCCAGAATGGCAGATGATGGAAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAACTGGCAGTAATGCCACAGGATCGGGTGGTTCGTTTGGAATGGGACCGAAGATATCTCTCGGTTCTTGGAGTCGAAAACAGTCGGCTATATGAATTGAGATTACAAACTCCAGAAAACGTGTTCGTAGAAGAAGAAAATGAGTTGCGTCAAGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGA

Protein sequence

MAVILDSFLPPIHTLSSSIRQRIPITSPSPRWPMDSSPKCRSESQSIKAVAVPRRNAMALIFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKVNA

Homology

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BLAST of ClCG01G010870 vs. Swiss-Prot
Match: PPD1_ARATH (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 7.5e-85
Identity = 160/226 (70.80%), Postives = 185/226 (81.86%), Query Frame = 1


Query: 40  CRSESQSIKAVAVPRRNAMALIFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSF 99
           C ++++ + AV   +   M L+ S  I S + L    P+   S  V   EYIDTFDGYSF
Sbjct: 67  CLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANL----PTAFASTPV-FREYIDTFDGYSF 126

Query: 100 KYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQY 159
           KYP+NWIQVRGAGADIFFRDP VLDENLSVEFSSPSSS+Y S++DLG PEE GK+VL+QY
Sbjct: 127 KYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQY 186

Query: 160 LTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEW 219
           LTEFMSTRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW
Sbjct: 187 LTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEW 246

Query: 220 DRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 266
           +RRYL+VLGVEN RLY +RLQTPE VF+EEE +LR+VMDSFRV K+
Sbjct: 247 NRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

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BLAST of ClCG01G010870 vs. TrEMBL
Match: B9RFL8_RICCO (Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1435730 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 7.2e-103
Identity = 206/278 (74.10%), Postives = 228/278 (82.01%), Query Frame = 1


Query: 1   MAVILDSFLPPIHT--------LSSSIRQRIPITSPSPRWPMDSSPKCRSESQSIKAVAV 60
           MA ILDSFLPP+H         LSS     +PI++ S R    +S  C++  Q  KA AV
Sbjct: 1   MATILDSFLPPVHLTSPTRPAFLSSWFSCSLPISADSTRC---TSISCKN--QPTKAFAV 60

Query: 61  PRRNAMALIFSTCI-----FSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQ 120
           PRR+ MALIFS+CI     F +SALA+ S        VG  EYIDTFDGYSFKYPKNWIQ
Sbjct: 61  PRRSTMALIFSSCILSEVGFHSSALAQSS--------VGFREYIDTFDGYSFKYPKNWIQ 120

Query: 121 VRGAGADIFFRDPFVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTR 180
           VRGAGADIFFRDP+VLDENLSVE SSPSSS Y SV+DLGPP+EAGKKVLKQYLTEFMSTR
Sbjct: 121 VRGAGADIFFRDPYVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTR 180

Query: 181 LGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVL 240
           LGVRRES+ILSTSSR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDRVVRLEW+RRYLSVL
Sbjct: 181 LGVRRESDILSTSSRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVL 240

Query: 241 GVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 266
           GVEN+RLYELRLQTPENVFVEEEN+LRQVM+SFRVNKV
Sbjct: 241 GVENNRLYELRLQTPENVFVEEENDLRQVMESFRVNKV 265

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BLAST of ClCG01G010870 vs. TrEMBL
Match: A0A061F332_THECC (Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao GN=TCM_026794 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 1.6e-102
Identity = 201/267 (75.28%), Postives = 222/267 (83.15%), Query Frame = 1


Query: 1   MAVILDSFLPPIHTLSSSIRQRIPITSPSPRWPMDSSPKCRSESQSIKAVAVPRRNAMAL 60
           MA ILDS LPP        R  +P    +P +P  SS     ++Q  KA A+PRRNAMAL
Sbjct: 30  MATILDSLLPPS-------RPTLPTRLSTP-FPSSSSCISTRKTQKTKAFALPRRNAMAL 89

Query: 61  IFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120
           I S+CIFS   L + + +    PSVGL EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP
Sbjct: 90  ILSSCIFSEVGLHDFAFA---QPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 149

Query: 121 FVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180
           +VLDENLSVE SSPSSS YK+V+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 150 YVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 209

Query: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240
           SR+ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 210 SRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQ 269

Query: 241 TPENVFVEEENELRQVMDSFRVNKVNA 268
           TPENVFVEEEN+LRQVMDSFRVNKV +
Sbjct: 270 TPENVFVEEENDLRQVMDSFRVNKVTS 285

[Close]

BLAST of ClCG01G010870 vs. TrEMBL
Match: A0A0A0LTD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.6e-102
Identity = 195/210 (92.86%), Postives = 197/210 (93.81%), Query Frame = 1


Query: 58  MALIFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFF 117
           MAL+ STCIFSNSALA          SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFF
Sbjct: 1   MALMLSTCIFSNSALAVS--------SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFF 60

Query: 118 RDPFVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIL 177
           RDPFVLDENLSVEFSSPSSS Y SVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIL
Sbjct: 61  RDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIL 120

Query: 178 STSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYEL 237
           STSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYEL
Sbjct: 121 STSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYEL 180

Query: 238 RLQTPENVFVEEENELRQVMDSFRVNKVNA 268
           RLQTPENVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 181 RLQTPENVFVEEENDLRQVMDSFRVNKVNA 202

[Close]

BLAST of ClCG01G010870 vs. TrEMBL
Match: A0A0D2W809_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G208300 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 3.4e-100
Identity = 199/265 (75.09%), Postives = 219/265 (82.64%), Query Frame = 1


Query: 1   MAVILDSFLPPIHTLSSSIRQRIPITSPSPRWPMDSSPKCRSESQSIKAVAVPRRNAMAL 60
           MA+ILDS LP    LS   R  +P    +P +P  +S  C   +QS +A ++PRRNAMAL
Sbjct: 1   MAIILDSLLP----LS---RPTLPARLSTP-FPPPASRLCTRRNQSFQAFSIPRRNAMAL 60

Query: 61  IFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120
           I ST IFS   L +      PS  VG  EYIDTFDGYS KYP+NWIQVRGAGADIFFRDP
Sbjct: 61  ILSTYIFSEVGLHDNIAFAEPS--VGFREYIDTFDGYSLKYPQNWIQVRGAGADIFFRDP 120

Query: 121 FVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180
           +VLDENLSVE SSPSSS YK+V+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 121 YVLDENLSVELSSPSSSRYKTVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180

Query: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240
           SR+ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 181 SRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQ 240

Query: 241 TPENVFVEEENELRQVMDSFRVNKV 266
           TPE+VFVEEEN+LRQVMDSFRVNKV
Sbjct: 241 TPESVFVEEENDLRQVMDSFRVNKV 255

[Close]

BLAST of ClCG01G010870 vs. TrEMBL
Match: E5LBM4_GOSHI (PsbP domain protein 1 OS=Gossypium hirsutum GN=PPD1 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 4.4e-100
Identity = 199/265 (75.09%), Postives = 219/265 (82.64%), Query Frame = 1


Query: 1   MAVILDSFLPPIHTLSSSIRQRIPITSPSPRWPMDSSPKCRSESQSIKAVAVPRRNAMAL 60
           MA+ILDS LP    LS   R  +P    +P +P  +S  C   +QS +A ++PRRNAMAL
Sbjct: 1   MAIILDSLLP----LS---RPTLPARLSTP-FPPSASCLCTRRNQSFQASSIPRRNAMAL 60

Query: 61  IFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120
           I ST IFS   L +      PS  VG  EYIDTFDGYS KYP+NWIQVRGAGADIFFRDP
Sbjct: 61  ILSTYIFSEVGLHDNIAFAEPS--VGFREYIDTFDGYSLKYPQNWIQVRGAGADIFFRDP 120

Query: 121 FVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180
           +VLDENLSVE SSPSSS YK+V+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 121 YVLDENLSVELSSPSSSRYKTVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180

Query: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240
           SR+ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 181 SRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQ 240

Query: 241 TPENVFVEEENELRQVMDSFRVNKV 266
           TPE+VFVEEEN+LRQVMDSFRVNKV
Sbjct: 241 TPESVFVEEENDLRQVMDSFRVNKV 255

[Close]

BLAST of ClCG01G010870 vs. TAIR10
Match: AT4G15510.1 (AT4G15510.1 Photosystem II reaction center PsbP family protein)

HSP 1 Score: 315.1 bits (806), Expect = 4.2e-86
Identity = 160/226 (70.80%), Postives = 185/226 (81.86%), Query Frame = 1


Query: 40  CRSESQSIKAVAVPRRNAMALIFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSF 99
           C ++++ + AV   +   M L+ S  I S + L    P+   S  V   EYIDTFDGYSF
Sbjct: 67  CLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANL----PTAFASTPV-FREYIDTFDGYSF 126

Query: 100 KYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQY 159
           KYP+NWIQVRGAGADIFFRDP VLDENLSVEFSSPSSS+Y S++DLG PEE GK+VL+QY
Sbjct: 127 KYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQY 186

Query: 160 LTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEW 219
           LTEFMSTRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW
Sbjct: 187 LTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEW 246

Query: 220 DRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 266
           +RRYL+VLGVEN RLY +RLQTPE VF+EEE +LR+VMDSFRV K+
Sbjct: 247 NRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

[Close]

BLAST of ClCG01G010870 vs. NCBI nr
Match: gi|449443516|ref|XP_004139523.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 460.3 bits (1183), Expect = 2.3e-126
Identity = 241/267 (90.26%), Postives = 245/267 (91.76%), Query Frame = 1


Query: 1   MAVILDSFLPPIHTLSSSIRQRIPITSPSPRWPMDSSPKCRSESQSIKAVAVPRRNAMAL 60
           MAVILDSFLP I TLSSS RQRIP TS S RWPM+S PKC SESQSIK VAVPRR+AMAL
Sbjct: 1   MAVILDSFLPSIQTLSSSFRQRIPSTS-STRWPMNSFPKCCSESQSIKGVAVPRRSAMAL 60

Query: 61  IFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120
           + STCIFSNSALA          SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP
Sbjct: 61  MLSTCIFSNSALAVS--------SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120

Query: 121 FVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180
           FVLDENLSVEFSSPSSS Y SVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 121 FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180

Query: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240
           SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ
Sbjct: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240

Query: 241 TPENVFVEEENELRQVMDSFRVNKVNA 268
           TPENVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 TPENVFVEEENDLRQVMDSFRVNKVNA 258

[Close]

BLAST of ClCG01G010870 vs. NCBI nr
Match: gi|659128677|ref|XP_008464319.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 451.4 bits (1160), Expect = 1.1e-123
Identity = 239/267 (89.51%), Postives = 242/267 (90.64%), Query Frame = 1


Query: 1   MAVILDSFLPPIHTLSSSIRQRIPITSPSPRWPMDSSPKCRSESQSIKAVAVPRRNAMAL 60
           MAVIL SFLP I TL+S IRQRIP TS S R P+ S PKC S+SQSIK VAVPRRNAMAL
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTS-STRSPIISFPKCCSQSQSIKDVAVPRRNAMAL 60

Query: 61  IFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120
           I STCIFSNSA A P        SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP
Sbjct: 61  ILSTCIFSNSAFAVP--------SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120

Query: 121 FVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180
           FVLDENLSVEFSSPSSS Y SVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 121 FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180

Query: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240
           SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ
Sbjct: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240

Query: 241 TPENVFVEEENELRQVMDSFRVNKVNA 268
           TPENVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 TPENVFVEEENELRQVMDSFRVNKVNA 258

[Close]

BLAST of ClCG01G010870 vs. NCBI nr
Match: gi|255542948|ref|XP_002512537.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus communis])

HSP 1 Score: 381.7 bits (979), Expect = 1.0e-102
Identity = 206/278 (74.10%), Postives = 228/278 (82.01%), Query Frame = 1


Query: 1   MAVILDSFLPPIHT--------LSSSIRQRIPITSPSPRWPMDSSPKCRSESQSIKAVAV 60
           MA ILDSFLPP+H         LSS     +PI++ S R    +S  C++  Q  KA AV
Sbjct: 1   MATILDSFLPPVHLTSPTRPAFLSSWFSCSLPISADSTRC---TSISCKN--QPTKAFAV 60

Query: 61  PRRNAMALIFSTCI-----FSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQ 120
           PRR+ MALIFS+CI     F +SALA+ S        VG  EYIDTFDGYSFKYPKNWIQ
Sbjct: 61  PRRSTMALIFSSCILSEVGFHSSALAQSS--------VGFREYIDTFDGYSFKYPKNWIQ 120

Query: 121 VRGAGADIFFRDPFVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTR 180
           VRGAGADIFFRDP+VLDENLSVE SSPSSS Y SV+DLGPP+EAGKKVLKQYLTEFMSTR
Sbjct: 121 VRGAGADIFFRDPYVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTR 180

Query: 181 LGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVL 240
           LGVRRES+ILSTSSR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDRVVRLEW+RRYLSVL
Sbjct: 181 LGVRRESDILSTSSRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVL 240

Query: 241 GVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 266
           GVEN+RLYELRLQTPENVFVEEEN+LRQVM+SFRVNKV
Sbjct: 241 GVENNRLYELRLQTPENVFVEEENDLRQVMESFRVNKV 265

[Close]

BLAST of ClCG01G010870 vs. NCBI nr
Match: gi|590644876|ref|XP_007031203.1| (Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 380.6 bits (976), Expect = 2.3e-102
Identity = 201/267 (75.28%), Postives = 222/267 (83.15%), Query Frame = 1


Query: 1   MAVILDSFLPPIHTLSSSIRQRIPITSPSPRWPMDSSPKCRSESQSIKAVAVPRRNAMAL 60
           MA ILDS LPP        R  +P    +P +P  SS     ++Q  KA A+PRRNAMAL
Sbjct: 30  MATILDSLLPPS-------RPTLPTRLSTP-FPSSSSCISTRKTQKTKAFALPRRNAMAL 89

Query: 61  IFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120
           I S+CIFS   L + + +    PSVGL EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP
Sbjct: 90  ILSSCIFSEVGLHDFAFA---QPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 149

Query: 121 FVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180
           +VLDENLSVE SSPSSS YK+V+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 150 YVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 209

Query: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240
           SR+ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 210 SRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQ 269

Query: 241 TPENVFVEEENELRQVMDSFRVNKVNA 268
           TPENVFVEEEN+LRQVMDSFRVNKV +
Sbjct: 270 TPENVFVEEENDLRQVMDSFRVNKVTS 285

[Close]

BLAST of ClCG01G010870 vs. NCBI nr
Match: gi|778659702|ref|XP_011654885.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 379.4 bits (973), Expect = 5.1e-102
Identity = 195/210 (92.86%), Postives = 197/210 (93.81%), Query Frame = 1


Query: 58  MALIFSTCIFSNSALAEPSPSPSPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFF 117
           MAL+ STCIFSNSALA          SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFF
Sbjct: 1   MALMLSTCIFSNSALAVS--------SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFF 60

Query: 118 RDPFVLDENLSVEFSSPSSSSYKSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIL 177
           RDPFVLDENLSVEFSSPSSS Y SVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIL
Sbjct: 61  RDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIL 120

Query: 178 STSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYEL 237
           STSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYEL
Sbjct: 121 STSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYEL 180

Query: 238 RLQTPENVFVEEENELRQVMDSFRVNKVNA 268
           RLQTPENVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 181 RLQTPENVFVEEENDLRQVMDSFRVNKVNA 202

The following BLAST results are available for this feature:

BLAST of ClCG01G010870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPD1_ARATH	7.5e-85	70.80	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 ...	[more]

BLAST of ClCG01G010870 vs. TrEMBL


Match Name	E-value	Identity	Description
B9RFL8_RICCO	7.2e-103	74.10	Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN...	[more]
A0A061F332_THECC	1.6e-102	75.28	Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao ...	[more]
A0A0A0LTD2_CUCSA	3.6e-102	92.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1	[more]
A0A0D2W809_GOSRA	3.4e-100	75.09	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G208300 PE=4 SV=1	[more]
E5LBM4_GOSHI	4.4e-100	75.09	PsbP domain protein 1 OS=Gossypium hirsutum GN=PPD1 PE=4 SV=1	[more]

BLAST of ClCG01G010870 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15510.1	4.2e-86	70.80	Photosystem II reaction center PsbP family protein	[more]

BLAST of ClCG01G010870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443516\|ref\|XP_004139523.1\|	2.3e-126	90.26	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis s...	[more]
gi\|659128677\|ref\|XP_008464319.1\|	1.1e-123	89.51	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m...	[more]
gi\|255542948\|ref\|XP_002512537.1\|	1.0e-102	74.10	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus c...	[more]
gi\|590644876\|ref\|XP_007031203.1\|	2.3e-102	75.28	Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao]	[more]
gi\|778659702\|ref\|XP_011654885.1\|	5.1e-102	92.86	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis s...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002683	PsbP
IPR016123	Mog1/PsbP_a/b/a-sand

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0048564	photosystem I assembly
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0044434	chloroplast part
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G010870.1	ClCG01G010870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 82..262 score: 8.0
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 86..262 score: 3.6
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 90..262 score: 6.28
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 4..267 score: 1.1E
None	No IPR available	PANTHER	PTHR31407:SF15	SUBFAMILY NOT NAMED	coord: 4..267 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G010870	Csa1G181310	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G010870	MELO3C026109	Melon (DHL92) v3.5.1	mewcgB137
ClCG01G010870	Cla010961	Watermelon (97103) v1	wcgwmB155
ClCG01G010870	Cla97C01G010620	Watermelon (97103) v2	wcgwmbB089
ClCG01G010870	CSPI01G15570	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G010870	Cucsa.180670	Cucumber (Gy14) v1	cgywcgB321
ClCG01G010870	CmaCh10G011670	Cucurbita maxima (Rimu)	cmawcgB051
ClCG01G010870	CmoCh10G012460	Cucurbita moschata (Rifu)	cmowcgB042
ClCG01G010870	Lsi02G011470	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G010870	Cp4.1LG18g00110	Cucurbita pepo (Zucchini)	cpewcgB317
ClCG01G010870	MELO3C026109.2	Melon (DHL92) v3.6.1	medwcgB126
ClCG01G010870	Carg27421	Silver-seed gourd	carwcgB0720
ClCG01G010870	CsaV3_1G015710	Cucumber (Chinese Long) v3	cucwcgB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G010870	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G010870	Silver-seed gourd	carwcgB0053
ClCG01G010870	Wax gourd	wcgwgoB241
ClCG01G010870	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G010870	Cucurbita moschata (Rifu)	cmowcgB345