CsaV3_1G015710 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015710
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	PsbP family
Location	chr1 : 11265563 .. 11267857 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTAGTGTTTCCCTTTCTCGAGATTCCTGAAAATGGCCGTAATCCTCGACTCCTTCCTACCTTCAATTCAAACACTGAGTTCTTCATTTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTGGCCTATGAATTCATTCCCCAAATGTTGCTCTGAATCTCAATCGGTAATTCTTCACAAACTGTAATCTATCTGGAACTTGTTACTTGCATTTATCGTTACCGCTATACCTTTCTAATGTATAATCAGATTAAAGGCGTTGCAGTTCCTAGGAGGAGTGCAATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAACATGCTTCTACACTTATCCTTTCCTGCTTCAATTCTGTCCATTTTTCTCATTCACTTGTTCTTTATCTGCACATTTGGTTATCATATTCAAAATGTTTAGCCCAAAATGTTTAGATTTTAAAACTACAAATCATAAATCAAATGGTTACCAAGTGAGACCGTAAGTTTCTCAACCATGGATAAATTATTAGATTTATATTCATAAGCTTAATAGATATCTTTTAAAGTGTTCAGCTCAACGAGGACAAAAGATCTCGAGTTCAAATCTCACCCCCAAGTTGTATTACAATACCTTTTAAAGTTTGATGGTCCGGAAGACAAATACAAAAACAAAATGAAACTTGTAATCTCACCTTTTAAAAACCTCTTCTAATTGTCAAAACAAAAGTTCTCTTTGGTCAAGTGTAATAGTTTCACTCGAACAAACGTTTCCAGTGTTTTCAACAGCAGAAATCACTGGCCGTGAAGCTTAGTAATAAGCAACAGAAAACCAGAATGTTGTAAGAGTAGCACTTCAAAGATTGTTGTGAGCTGTGGCATTCTAGTTTTCGTTATATATGTATGTGATGAAGTTTGAAATTTCATAGTTCAATGCTTAACATTTAACATTAATAATGTAATGTCCAGATTTGGTTTATTTATTTATTTATGCTTTTTTTTTACCCTTGAAAAGTTACATTTATTTTGAAACTTATTCGAGACAAGAAATGACATTTAAACTTGAAGGGCTTAGTGCAACTTTGAATGGAACTAACCCATAGGTTATAAGTTTAAGTTAATCCTTAATATGTTGATCTCTATTTCTTCAAATATAAAGTCATATGCTAACAACAATAATCCATATATATCTTACAATTATATGATATCAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGAAATGTTTTTGAGGGTTTTCAGGTGTAATTGCTGAGACATTGTACCTTCCATCACTAAAGCAAATTGCTTCTATTCATTTTAGAGTTTGATATTGTGTCCTGTCTCACTCATTGAATATTTCTTTATTCATCGATTAAGTAAAAGGTCACCAAAGATTGACAAAGAATCAATTTCACTAAAACAGGAATCACTTCTGAGCTGCCAAAAGGCATCATTTAAATAAACTTTACAAAGGGTCACAAATTGTGCAAGTTCATAATAGAAGATTGTGCACTTGAGATCGAGGGTTGCTGCTATTGGTTATGATCGAACTTCAAACTGTCCTGCTCGTGTTAGAGCCCGAAAGCCTTTGTAAGGATGATTTGGCAAGTTCTTCACATCAAGTTTATCTACTTGCAGGCCAGAGAGGACTACACCCATGATCTTAAAACGCACTTGAAATGTTGGAAATACATGAAGCTGTTGTAATCCTGTTACGAGTGTTAATGTTCCAGACATTGAAGGGGTTTTATCTTTTGGAATCTTTCCA

mRNA sequence

ATGGCCGTAATCCTCGACTCCTTCCTACCTTCAATTCAAACACTGAGTTCTTCATTTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTGGCCTATGAATTCATTCCCCAAATGTTGCTCTGAATCTCAATCGATTAAAGGCGTTGCAGTTCCTAGGAGGAGTGCAATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGA

Coding sequence (CDS)

ATGGCCGTAATCCTCGACTCCTTCCTACCTTCAATTCAAACACTGAGTTCTTCATTTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTGGCCTATGAATTCATTCCCCAAATGTTGCTCTGAATCTCAATCGATTAAAGGCGTTGCAGTTCCTAGGAGGAGTGCAATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGA

Protein sequence

MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKVNA

Homology

[Close]

BLAST of CsaV3_1G015710 vs. NCBI nr
Match: XP_004139523.1 (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 504.6 bits (1298), Expect = 2.0e-139
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM
Sbjct: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60

Query: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120
           LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240
           YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 241 ENDLRQVMDSFRVNKVNA 259
           ENDLRQVMDSFRVNKVNA
Sbjct: 241 ENDLRQVMDSFRVNKVNA 258

[Close]

BLAST of CsaV3_1G015710 vs. NCBI nr
Match: XP_008464319.1 (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 474.6 bits (1220), Expect = 2.2e-130
Identity = 244/258 (94.57%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MAVIL SFLPSIQTL+S  RQRIPSTSSTR P+ SFPKCCS+SQSIK VAVPRR+AMAL+
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRSPIISFPKCCSQSQSIKDVAVPRRNAMALI 60

Query: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120
           LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240
           YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 241 ENDLRQVMDSFRVNKVNA 259
           EN+LRQVMDSFRVNKVNA
Sbjct: 241 ENELRQVMDSFRVNKVNA 258

[Close]

BLAST of CsaV3_1G015710 vs. NCBI nr
Match: XP_022961486.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 441.8 bits (1135), Expect = 1.6e-120
Identity = 233/264 (88.26%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSST-RW-PMNSFPKC----CSESQSIKGVAVPRR 60
           MAVILDSFLP I TLSSS R+ IP+ SS+ RW P++S PKC     SESQ IK +AVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPIKALAVPRR 60

Query: 61  SAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           SAMAL+LS+CIFSNSALA  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENDLRQVMDSFRVNKVNA 259
           NVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of CsaV3_1G015710 vs. NCBI nr
Match: XP_023515691.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.1 bits (1128), Expect = 1.0e-119
Identity = 232/264 (87.88%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSST-RW-PMNSFPK----CCSESQSIKGVAVPRR 60
           MAVILDSFLP I TL+SS R+ IP+ SS+ RW P++S PK      SESQ IKG+AVPRR
Sbjct: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60

Query: 61  SAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           SAMAL+LS+CIFSNSALA  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENDLRQVMDSFRVNKVNA 259
           NVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of CsaV3_1G015710 vs. NCBI nr
Match: XP_022968780.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 434.9 bits (1117), Expect = 1.9e-118
Identity = 230/264 (87.12%), Postives = 243/264 (92.05%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTS-STRW-PMNSFPK----CCSESQSIKGVAVPRR 60
           MAVILDSFLP I TLSSS R+ IP+ S S RW P++S PK      SES+ IK +AVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60

Query: 61  SAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           SAMAL+LS+CIFSNSA+A  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENDLRQVMDSFRVNKVNA 259
           NVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of CsaV3_1G015710 vs. TAIR10
Match: AT4G15510.1 (Photosystem II reaction center PsbP family protein)

HSP 1 Score: 315.1 bits (806), Expect = 4.1e-86
Identity = 158/221 (71.49%), Postives = 184/221 (83.26%), Query Frame = 0


Query: 39  CCSESQSIKGVAVPRRSAMALMLSTCIFSNSALA---VSSVGLLEYIDTFDGYSFKYPKN 98
           C ++++ +  V   +   M L++S  I S + L     S+    EYIDTFDGYSFKYP+N
Sbjct: 67  CLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQN 126

Query: 99  WIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFM 158
           WIQVRGAGADIFFRDP VLDENLSVEFSSPSSS Y S++DLG PEE GK+VL+QYLTEFM
Sbjct: 127 WIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFM 186

Query: 159 STRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYL 218
           STRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL
Sbjct: 187 STRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYL 246

Query: 219 SVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 257
           +VLGVEN RLY +RLQTPE VF+EEE DLR+VMDSFRV K+
Sbjct: 247 AVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

[Close]

BLAST of CsaV3_1G015710 vs. TAIR10
Match: AT2G39470.1 (PsbP-like protein 2)

HSP 1 Score: 49.3 bits (116), Expect = 4.2e-06
Identity = 37/178 (20.79%), Postives = 74/178 (41.57%), Query Frame = 0


Query: 81  YIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPE 140
           ++D  DGYS+ YP +W +      D  F+D ++  +N+ V F     +  N + ++GP E
Sbjct: 91  FVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRF---IPTEKNDIHEVGPME 150

Query: 141 EAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKS--YANNNELA 200
           E    ++K         +     +   +       +DG+ YY  E  +++  YA  +   
Sbjct: 151 EVVYDLVKH--------KFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS--- 210

Query: 201 VMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 257
                            + + V N+R Y L +   E  + + +  L+ V DS ++ ++
Sbjct: 211 ----------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of CsaV3_1G015710 vs. Swiss-Prot
Match: sp|O23403|PPD1_ARATH (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD1 PE=1 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 7.4e-85
Identity = 158/221 (71.49%), Postives = 184/221 (83.26%), Query Frame = 0


Query: 39  CCSESQSIKGVAVPRRSAMALMLSTCIFSNSALA---VSSVGLLEYIDTFDGYSFKYPKN 98
           C ++++ +  V   +   M L++S  I S + L     S+    EYIDTFDGYSFKYP+N
Sbjct: 67  CLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQN 126

Query: 99  WIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFM 158
           WIQVRGAGADIFFRDP VLDENLSVEFSSPSSS Y S++DLG PEE GK+VL+QYLTEFM
Sbjct: 127 WIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFM 186

Query: 159 STRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYL 218
           STRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL
Sbjct: 187 STRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYL 246

Query: 219 SVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 257
           +VLGVEN RLY +RLQTPE VF+EEE DLR+VMDSFRV K+
Sbjct: 247 AVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

[Close]

BLAST of CsaV3_1G015710 vs. Swiss-Prot
Match: sp|O80634|PNSL1_ARATH (Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL1 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 7.5e-05
Identity = 37/178 (20.79%), Postives = 74/178 (41.57%), Query Frame = 0


Query: 81  YIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPE 140
           ++D  DGYS+ YP +W +      D  F+D ++  +N+ V F     +  N + ++GP E
Sbjct: 91  FVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRF---IPTEKNDIHEVGPME 150

Query: 141 EAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKS--YANNNELA 200
           E    ++K         +     +   +       +DG+ YY  E  +++  YA  +   
Sbjct: 151 EVVYDLVKH--------KFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS--- 210

Query: 201 VMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 257
                            + + V N+R Y L +   E  + + +  L+ V DS ++ ++
Sbjct: 211 ----------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of CsaV3_1G015710 vs. TrEMBL
Match: tr|A0A1S3CLM8|A0A1S3CLM8_CUCME (psbP domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502232 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 1.5e-130
Identity = 244/258 (94.57%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MAVIL SFLPSIQTL+S  RQRIPSTSSTR P+ SFPKCCS+SQSIK VAVPRR+AMAL+
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRSPIISFPKCCSQSQSIKDVAVPRRNAMALI 60

Query: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120
           LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240
           YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 241 ENDLRQVMDSFRVNKVNA 259
           EN+LRQVMDSFRVNKVNA
Sbjct: 241 ENELRQVMDSFRVNKVNA 258

[Close]

BLAST of CsaV3_1G015710 vs. TrEMBL
Match: tr|A0A1S4E4M1|A0A1S4E4M1_CUCME (psbP domain-containing protein 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502232 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 1.4e-109
Identity = 205/210 (97.62%), Postives = 208/210 (99.05%), Query Frame = 0


Query: 49  VAVPRRSAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFF 108
           VAVPRR+AMAL+LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFF
Sbjct: 9   VAVPRRNAMALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFF 68

Query: 109 RDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIL 168
           RDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIL
Sbjct: 69  RDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIL 128

Query: 169 STSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYEL 228
           STSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYEL
Sbjct: 129 STSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYEL 188

Query: 229 RLQTPENVFVEEENDLRQVMDSFRVNKVNA 259
           RLQTPENVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 189 RLQTPENVFVEEENELRQVMDSFRVNKVNA 218

[Close]

BLAST of CsaV3_1G015710 vs. TrEMBL
Match: tr|A0A0A0LTD2|A0A0A0LTD2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181310 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.0e-107
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 57  MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 116
           MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 117 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 176
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 177 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 236
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 237 FVEEENDLRQVMDSFRVNKVNA 259
           FVEEENDLRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

[Close]

BLAST of CsaV3_1G015710 vs. TrEMBL
Match: tr|A0A2C9VF98|A0A2C9VF98_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G109600 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.1e-101
Identity = 202/271 (74.54%), Postives = 227/271 (83.76%), Query Frame = 0


Query: 1   MAVILDSFLPSIQ--------TLSSSFRQRIP-STSSTRWPMNSFPKCCSESQSIKGVAV 60
           MA ILDS  P +Q         L + F   +P ST STR P  S   C +E+ S K   V
Sbjct: 1   MATILDSLTPPVQLTPPTRSAVLPTWFGCSLPISTHSTRCPSIS---CKNENHSTKAFVV 60

Query: 61  PRRSAMALMLSTCIFS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADI 120
           PRR+A+AL+LS+C+FS     N+A+A SSVG  EYIDTFDGYSFKYP+NWIQVRG+GADI
Sbjct: 61  PRRNAVALILSSCVFSEMGFHNTAVAQSSVGFREYIDTFDGYSFKYPQNWIQVRGSGADI 120

Query: 121 FFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN 180
           FFRDPFVLDENLSVE SSPSSS Y SV+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESN
Sbjct: 121 FFRDPFVLDENLSVEMSSPSSSNYRSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESN 180

Query: 181 ILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLY 240
           +LSTSSR+ADDG+ YYQVEVNIKS+ANNNE+AVMPQDRVVRLEW+RRYLSVLGVEN+RLY
Sbjct: 181 VLSTSSRVADDGKLYYQVEVNIKSFANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLY 240

Query: 241 ELRLQTPENVFVEEENDLRQVMDSFRVNKVN 258
           ELRLQTPENVF+EEENDLRQVMDSFRVNKV+
Sbjct: 241 ELRLQTPENVFLEEENDLRQVMDSFRVNKVS 268

[Close]

BLAST of CsaV3_1G015710 vs. TrEMBL
Match: tr|B9RFL8|B9RFL8_RICCO (Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis OX=3988 GN=RCOM_1435730 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.9e-101
Identity = 200/265 (75.47%), Postives = 223/265 (84.15%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCS----ESQSIKGVAVPRRSA 60
           MA ILDSFLP +   S +    + S  S   P+++    C+    ++Q  K  AVPRRS 
Sbjct: 1   MATILDSFLPPVHLTSPTRPAFLSSWFSCSLPISADSTRCTSISCKNQPTKAFAVPRRST 60

Query: 61  MALMLSTCI-----FSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120
           MAL+ S+CI     F +SALA SSVG  EYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP
Sbjct: 61  MALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120

Query: 121 FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180
           +VLDENLSVE SSPSSS+Y SV+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRES+ILSTS
Sbjct: 121 YVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILSTS 180

Query: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240
           SR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDRVVRLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 181 SRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELRLQ 240

Query: 241 TPENVFVEEENDLRQVMDSFRVNKV 257
           TPENVFVEEENDLRQVM+SFRVNKV
Sbjct: 241 TPENVFVEEENDLRQVMESFRVNKV 265

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139523.1	2.0e-139	100.00	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis s...	[more]
XP_008464319.1	2.2e-130	94.57	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m...	[more]
XP_022961486.1	1.6e-120	88.26	psbP domain-containing protein 1, chloroplastic [Cucurbita moschata]	[more]
XP_023515691.1	1.0e-119	87.88	psbP domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022968780.1	1.9e-118	87.12	psbP domain-containing protein 1, chloroplastic [Cucurbita maxima]	[more]

BLAST of CsaV3_1G015710 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15510.1	4.1e-86	71.49	Photosystem II reaction center PsbP family protein	[more]
AT2G39470.1	4.2e-06	20.79	PsbP-like protein 2	[more]

BLAST of CsaV3_1G015710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O23403\|PPD1_ARATH	7.4e-85	71.49	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|O80634\|PNSL1_ARATH	7.5e-05	20.79	Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis t...	[more]

BLAST of CsaV3_1G015710 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLM8\|A0A1S3CLM8_CUCME	1.5e-130	94.57	psbP domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S4E4M1\|A0A1S4E4M1_CUCME	1.4e-109	97.62	psbP domain-containing protein 1, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0LTD2\|A0A0A0LTD2_CUCSA	1.0e-107	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181310 PE=4 SV=1	[more]
tr\|A0A2C9VF98\|A0A2C9VF98_MANES	1.1e-101	74.54	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G109600 PE=4 SV=...	[more]
tr\|B9RFL8\|B9RFL8_RICCO	1.9e-101	75.47	Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis OX...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0019898	extrinsic component of membrane
GO:0009654	photosystem II oxygen evolving complex
GO:0009523	photosystem II

Vocabulary: **INTERPRO**
Term	Definition
IPR016123	Mog1/PsbP_a/b/a-sand
IPR002683	PsbP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0048564	photosystem I assembly
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015710.1	CsaV3_1G015710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 78..253 e-value: 1.3E-48 score: 164.9
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 72..254 e-value: 2.5E-49 score: 169.3
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	SSF55724	Mog1p/PsbP-like	coord: 81..253
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 22..257
None	No IPR available	PANTHER	PTHR31407:SF15	SUBFAMILY NOT NAMED	coord: 22..257

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G015710	CSPI01G15570	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G015710	Cucsa.180670	Cucumber (Gy14) v1	cgycucB290
CsaV3_1G015710	CsGy1G015300	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G015710	Cla010961	Watermelon (97103) v1	cucwmB049
CsaV3_1G015710	MELO3C026109	Melon (DHL92) v3.5.1	cucmeB029
CsaV3_1G015710	ClCG01G010870	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015710	Lsi02G011470	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015710	MELO3C026109.2	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G015710	Cla97C01G010620	Watermelon (97103) v2	cucwmbB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015710	Silver-seed gourd	carcucB0056
CsaV3_1G015710	Cucurbita maxima (Rimu)	cmacucB0468
CsaV3_1G015710	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015710	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G015710	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G015710	Bottle gourd (USVL1VR-Ls)	cuclsiB044
CsaV3_1G015710	Wax gourd	cucwgoB039