MELO3C026109.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C026109.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPsbP-domain protein 1
Locationchr12 : 14233557 .. 14235789 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAATCTGAAACACAAAGTTAGTGTTTCCCTTTCTCTAGATTCCTCAAAAATGGCCGTAATCCTCCACTCCTTCCTACCTTCAATTCAAACACTCACTTCTCCAATTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTCGCCTATCATTTCATTCCCCAAATGTTGTTCTCAATCTCAATCGGTAATTCTTCACAATCTCTAATCATTCTGGAACTTGCTACCTACTTCCATTTATCGTTACCGCTACCTTTCTAATATATAATCAGATTAAAGACGTTGCAGTTCCAAGGAGGAATGCAATGGCGTTGATTTTGTCCACTTGTATTTTCTCTAATTCTGCTTTCGCTGTGCCTTCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCAAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATTTTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAATTTGCTTCTACACTTATCCTTTCCTCCTTCAATTCTCTCCATTTTGCTCAACAACTCCTCCTTTTATCTTTGCTTATCATATTCAAAATGTTGGCGAATTGTCAAATAGGTTTCTAATTAATTAATTTTGTAAACTTGATCGACATGTTGAAACCTACCGAATACAAAGTTGGAAGTTTAACGGCCTAACCGATATCTTTTAAATTTCGATGAACAAAATGAAACTTGTAATCTCACCTTTTGAAAACCTCTTCTAATTTTCTAAACAAAAGTTGTGTTTGGTCAAGTGTAATGGCTTCTCTCAAACAAACATTTCCAGTGTTTTCAACAGCAGAAAAGCTTAGTAACAAACAACGGAAAACCATAATGTTGTAAGAGTAACACTCCAAAGATTGCTGTGATTCGTGGCATTCTAGTTTTCGTTATATATATGTATGTGATGTAGTTTGTATAATACACGTACCTTTTGAAATTTCATAGTGCAATGCTTAACGCATTTAACATTAATAATGTAATGTCCTGACTTAATTAATTAATTTCTTTTTTGACTCTTGAAAAGTTACATTTAATCTGAAACTTATTCAAGACAAGAAATGACATTTAAACTTGAAGAATTTCATATTTTTCTGTGCAACTCTGAATGGAACTAACCCATAGGTTACAAGTTTAAGTTGATCCTTAATATGTTGTTTAGCTTCTTTGATCTCCATTTCTTCAAATGCATCAGAACAATTCGCAGTCTTACAATTATATGGATATCAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACCGAAGATATCTTTCAGTTCTTGGAGTAGAAAACAGTCGTCTATATGAGTTGAGATTACAAACTCCAGAAAATGTATTCGTAGAAGAAGAAAATGAGTTGCGCCAAGTAATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGAAATGTATTTGAGGGTTTTCAGGTGTAATTGCTGAAACATTGTAATTTCAATCACTAAAGCAAATTGCTCGTATTCATTTTAGAGTTTGACATTGGGGTCCTCTCTCACTAATCTAATATCTCTTGATTCATTGATTAAGTAAAAGGTCACCAAAGATTGACAAAGAATCAATTTCTCTAAAACAGGAATCACTTCTGGGCTGCCAAAAGGCATCATTTAAACAAACTTTACAAATGGTCACAAATTGTGCAAGTTCACAATAGAAGATTGTGCACTCGAGATCGAGGGTTGCTGCTGTTGGTTATGATCTAACTTCAAACTGTCCTGCTCGTGTTAGAGCCCGAAAGCCTTTGTAAGGATGATTTGGCAAGTTCTTCACATCGAGTTTATCTACTTGCAGGCCAGAGAGGACTACACCCATGATCTTAAAACGCACTTGAACTGTTGGAAATACATGAAGCTGTTGTAATCCTGATTCAAGTGTTAATGTTCCAGACATTGAAGGGGTTTTATCTTTTGGCATCTTTCCAATCGTCCAAGAGCAGATCTGTTTA

mRNA sequence

TAAAATCTGAAACACAAAGTTAGTGTTTCCCTTTCTCTAGATTCCTCAAAAATGGCCGTAATCCTCCACTCCTTCCTACCTTCAATTCAAACACTCACTTCTCCAATTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTCGCCTATCATTTCATTCCCCAAATGTTGTTCTCAATCTCAATCGGTAATTCTTCACAATCTCTAATCATTCTGGAACTTGCTACCTACTTCCATTTATCGTTACCGCTACCTTTCTAATATATAATCAGATTAAAGACGTTGCAGTTCCAAGGAGGAATGCAATGGCGTTGATTTTGTCCACTTGTATTTTCTCTAATTCTGCTTTCGCTGTGCCTTCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCAAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATTTTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACCGAAGATATCTTTCAGTTCTTGGAGTAGAAAACAGTCGTCTATATGAGTTGAGATTACAAACTCCAGAAAATGTATTCGTAGAAGAAGAAAATGAGTTGCGCCAAGTAATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGAAATGTATTTGAGGGTTTTCAGGTGTAATTGCTGAAACATTGTAATTTCAATCACTAAAGCAAATTGCTCGTATTCATTTTAGAGTTTGACATTGGGGTCCTCTCTCACTAATCTAATATCTCTTGATTCATTGATTAAGTAAAAGGTCACCAAAGATTGACAAAGAATCAATTTCTCTAAAACAGGAATCACTTCTGGGCTGCCAAAAGGCATCATTTAAACAAACTTTACAAATGGTCACAAATTGTGCAAGTTCACAATAGAAGATTGTGCACTCGAGATCGAGGGTTGCTGCTGTTGGTTATGATCTAACTTCAAACTGTCCTGCTCGTGTTAGAGCCCGAAAGCCTTTGTAAGGATGATTTGGCAAGTTCTTCACATCGAGTTTATCTACTTGCAGGCCAGAGAGGACTACACCCATGATCTTAAAACGCACTTGAACTGTTGGAAATACATGAAGCTGTTGTAATCCTGATTCAAGTGTTAATGTTCCAGACATTGAAGGGGTTTTATCTTTTGGCATCTTTCCAATCGTCCAAGAGCAGATCTGTTTA

Coding sequence (CDS)

ATGGCGTTGATTTTGTCCACTTGTATTTTCTCTAATTCTGCTTTCGCTGTGCCTTCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCAAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATTTTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACCGAAGATATCTTTCAGTTCTTGGAGTAGAAAACAGTCGTCTATATGAGTTGAGATTACAAACTCCAGAAAATGTATTCGTAGAAGAAGAAAATGAGTTGCGCCAAGTAATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGA

Protein sequence

MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKVNA
Homology
[Close]
BLAST of MELO3C026109.2 vs. NCBI nr
Match: XP_008464319.1 (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 1.6e-107
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 1   MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 57  MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 116

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 117 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 176

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 177 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 236

Query: 181 FVEEENELRQVMDSFRVNKVNA 203
           FVEEENELRQVMDSFRVNKVNA
Sbjct: 237 FVEEENELRQVMDSFRVNKVNA 258

[Close]
BLAST of MELO3C026109.2 vs. NCBI nr
Match: XP_016903181.1 (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 1.6e-107
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 1   MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 17  MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 76

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 77  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 136

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 137 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 196

Query: 181 FVEEENELRQVMDSFRVNKVNA 203
           FVEEENELRQVMDSFRVNKVNA
Sbjct: 197 FVEEENELRQVMDSFRVNKVNA 218

[Close]
BLAST of MELO3C026109.2 vs. NCBI nr
Match: XP_004139523.1 (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 390.6 bits (1002), Expect = 3.3e-105
Identity = 198/202 (98.02%), Postives = 200/202 (99.01%), Query Frame = 0 

Query: 1   MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MAL+LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 57  MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 116

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 117 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 176

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 177 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 236

Query: 181 FVEEENELRQVMDSFRVNKVNA 203
           FVEEEN+LRQVMDSFRVNKVNA
Sbjct: 237 FVEEENDLRQVMDSFRVNKVNA 258

[Close]
BLAST of MELO3C026109.2 vs. NCBI nr
Match: XP_011654885.1 (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis sativus] >KGN65018.1 hypothetical protein Csa_1G181310 [Cucumis sativus])

HSP 1 Score: 390.6 bits (1002), Expect = 3.3e-105
Identity = 198/202 (98.02%), Postives = 200/202 (99.01%), Query Frame = 0 

Query: 1   MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MAL+LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 181 FVEEENELRQVMDSFRVNKVNA 203
           FVEEEN+LRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

[Close]
BLAST of MELO3C026109.2 vs. NCBI nr
Match: XP_022961486.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 381.7 bits (979), Expect = 1.5e-102
Identity = 193/202 (95.54%), Postives = 197/202 (97.52%), Query Frame = 0 

Query: 1   MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MALILS+CIFSNSA A  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 63  MALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDE 122

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           N+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 123 NISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 182

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPENV
Sbjct: 183 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENV 242

Query: 181 FVEEENELRQVMDSFRVNKVNA 203
           FVEEENELRQVMDSFRVNKVNA
Sbjct: 243 FVEEENELRQVMDSFRVNKVNA 264

[Close]
BLAST of MELO3C026109.2 vs. TAIR10
Match: AT4G15510.1 (Photosystem II reaction center PsbP family protein)

HSP 1 Score: 308.5 bits (789), Expect = 3.0e-84
Identity = 157/204 (76.96%), Postives = 177/204 (86.76%), Query Frame = 0 

Query: 1   MALILSTCIFSN----SAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPF 60
           M L++S  I S     +AFA   V   EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP 
Sbjct: 85  MGLLMSGLIVSQANLPTAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPV 144

Query: 61  VLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSS 120
           VLDENLSVEFSSPSSS Y S++DLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSS
Sbjct: 145 VLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSS 204

Query: 121 RMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQT 180
           R+ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL+VLGVEN RLY +RLQT
Sbjct: 205 RVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQT 264

Query: 181 PENVFVEEENELRQVMDSFRVNKV 201
           PE VF+EEE +LR+VMDSFRV K+
Sbjct: 265 PEKVFLEEEKDLRRVMDSFRVEKI 287

[Close]
BLAST of MELO3C026109.2 vs. TAIR10
Match: AT2G39470.1 (PsbP-like protein 2)

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-06
Identity = 37/178 (20.79%), Postives = 75/178 (42.13%), Query Frame = 0 

Query: 25  YIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPE 84
           ++D  DGYS+ YP +W +      D  F+D ++  +N+ V F     +  N + ++GP E
Sbjct: 91  FVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRF---IPTEKNDIHEVGPME 150

Query: 85  EAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKS--YANNNELA 144
           E    ++K         +     +   +       +DG+ YY  E  +++  YA  +   
Sbjct: 151 EVVYDLVKH--------KFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS--- 210

Query: 145 VMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 201
                            + + V N+R Y L +   E  + + + +L+ V DS ++ ++
Sbjct: 211 ----------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]
BLAST of MELO3C026109.2 vs. Swiss-Prot
Match: sp|O23403|PPD1_ARATH (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD1 PE=1 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.4e-83
Identity = 157/204 (76.96%), Postives = 177/204 (86.76%), Query Frame = 0 

Query: 1   MALILSTCIFSN----SAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPF 60
           M L++S  I S     +AFA   V   EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP 
Sbjct: 85  MGLLMSGLIVSQANLPTAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPV 144

Query: 61  VLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSS 120
           VLDENLSVEFSSPSSS Y S++DLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSS
Sbjct: 145 VLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSS 204

Query: 121 RMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQT 180
           R+ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL+VLGVEN RLY +RLQT
Sbjct: 205 RVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQT 264

Query: 181 PENVFVEEENELRQVMDSFRVNKV 201
           PE VF+EEE +LR+VMDSFRV K+
Sbjct: 265 PEKVFLEEEKDLRRVMDSFRVEKI 287

[Close]
BLAST of MELO3C026109.2 vs. Swiss-Prot
Match: sp|O80634|PNSL1_ARATH (Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL1 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 7.7e-05
Identity = 37/178 (20.79%), Postives = 75/178 (42.13%), Query Frame = 0 

Query: 25  YIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPE 84
           ++D  DGYS+ YP +W +      D  F+D ++  +N+ V F     +  N + ++GP E
Sbjct: 91  FVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRF---IPTEKNDIHEVGPME 150

Query: 85  EAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKS--YANNNELA 144
           E    ++K         +     +   +       +DG+ YY  E  +++  YA  +   
Sbjct: 151 EVVYDLVKH--------KFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS--- 210

Query: 145 VMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 201
                            + + V N+R Y L +   E  + + + +L+ V DS ++ ++
Sbjct: 211 ----------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]
BLAST of MELO3C026109.2 vs. TrEMBL
Match: tr|A0A1S4E4M1|A0A1S4E4M1_CUCME (psbP domain-containing protein 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502232 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.0e-107
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 1   MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 17  MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 76

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 77  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 136

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 137 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 196

Query: 181 FVEEENELRQVMDSFRVNKVNA 203
           FVEEENELRQVMDSFRVNKVNA
Sbjct: 197 FVEEENELRQVMDSFRVNKVNA 218

[Close]
BLAST of MELO3C026109.2 vs. TrEMBL
Match: tr|A0A1S3CLM8|A0A1S3CLM8_CUCME (psbP domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502232 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.0e-107
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 

Query: 1   MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 57  MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 116

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 117 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 176

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 177 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 236

Query: 181 FVEEENELRQVMDSFRVNKVNA 203
           FVEEENELRQVMDSFRVNKVNA
Sbjct: 237 FVEEENELRQVMDSFRVNKVNA 258

[Close]
BLAST of MELO3C026109.2 vs. TrEMBL
Match: tr|A0A0A0LTD2|A0A0A0LTD2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181310 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 2.2e-105
Identity = 198/202 (98.02%), Postives = 200/202 (99.01%), Query Frame = 0 

Query: 1   MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MAL+LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 181 FVEEENELRQVMDSFRVNKVNA 203
           FVEEEN+LRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

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BLAST of MELO3C026109.2 vs. TrEMBL
Match: tr|A0A061F3V9|A0A061F3V9_THECC (Photosystem II reaction center PsbP family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026794 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.9e-94
Identity = 180/207 (86.96%), Postives = 193/207 (93.24%), Query Frame = 0 

Query: 1   MALILSTCIFS-----NSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 60
           MALILS+CIFS     + AFA PSVGL EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP
Sbjct: 48  MALILSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 107

Query: 61  FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 120
           +VLDENLSVE SSPSSSRY +V+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 108 YVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 167

Query: 121 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 180
           SR+ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 168 SRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQ 227

Query: 181 TPENVFVEEENELRQVMDSFRVNKVNA 203
           TPENVFVEEEN+LRQVMDSFRVNKV +
Sbjct: 228 TPENVFVEEENDLRQVMDSFRVNKVTS 254

[Close]
BLAST of MELO3C026109.2 vs. TrEMBL
Match: tr|A0A061F332|A0A061F332_THECC (Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026794 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.9e-94
Identity = 180/207 (86.96%), Postives = 193/207 (93.24%), Query Frame = 0 

Query: 1   MALILSTCIFS-----NSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 60
           MALILS+CIFS     + AFA PSVGL EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP
Sbjct: 79  MALILSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 138

Query: 61  FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 120
           +VLDENLSVE SSPSSSRY +V+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 139 YVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 198

Query: 121 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 180
           SR+ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 199 SRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQ 258

Query: 181 TPENVFVEEENELRQVMDSFRVNKVNA 203
           TPENVFVEEEN+LRQVMDSFRVNKV +
Sbjct: 259 TPENVFVEEENDLRQVMDSFRVNKVTS 285

The following BLAST results are available for this feature:
BLAST of MELO3C026109.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464319.11.6e-107100.00PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m... [more]
XP_016903181.11.6e-107100.00PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis m... [more]
XP_004139523.13.3e-10598.02PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis s... [more]
XP_011654885.13.3e-10598.02PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis s... [more]
XP_022961486.11.5e-10295.54psbP domain-containing protein 1, chloroplastic [Cucurbita moschata][more]
BLAST of MELO3C026109.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15510.13.0e-8476.96Photosystem II reaction center PsbP family protein[more]
AT2G39470.14.3e-0620.79PsbP-like protein 2[more]
BLAST of MELO3C026109.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O23403|PPD1_ARATH5.4e-8376.96PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
sp|O80634|PNSL1_ARATH7.7e-0520.79Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis t... [more]
BLAST of MELO3C026109.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E4M1|A0A1S4E4M1_CUCME1.0e-107100.00psbP domain-containing protein 1, chloroplastic isoform X2 OS=Cucumis melo OX=36... [more]
tr|A0A1S3CLM8|A0A1S3CLM8_CUCME1.0e-107100.00psbP domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=36... [more]
tr|A0A0A0LTD2|A0A0A0LTD2_CUCSA2.2e-10598.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181310 PE=4 SV=1[more]
tr|A0A061F3V9|A0A061F3V9_THECC2.9e-9486.96Photosystem II reaction center PsbP family protein isoform 2 OS=Theobroma cacao ... [more]
tr|A0A061F332|A0A061F332_THECC2.9e-9486.96Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009654photosystem II oxygen evolving complex
GO:0009523photosystem II
GO:0019898extrinsic component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP
IPR016123Mog1/PsbP_a/b/a-sand
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0048564 photosystem I assembly
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026109.2.1MELO3C026109.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3DG3DSA:3.40.1000.10coord: 17..198
e-value: 1.1E-49
score: 170.5
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILYSSF55724Mog1p/PsbP-likecoord: 25..197
IPR002683PsbP familyPFAMPF01789PsbPcoord: 22..197
e-value: 7.9E-49
score: 165.7
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 2..201
NoneNo IPR availablePANTHERPTHR31407:SF15SUBFAMILY NOT NAMEDcoord: 2..201

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C026109.2Csa1G181310Cucumber (Chinese Long) v2cumedB024
MELO3C026109.2CSPI01G15570Wild cucumber (PI 183967)cpimedB025
MELO3C026109.2Cucsa.180670Cucumber (Gy14) v1cgymedB320
MELO3C026109.2Lsi02G011470Bottle gourd (USVL1VR-Ls)lsimedB184
MELO3C026109.2Cla010961Watermelon (97103) v1medwmB168
MELO3C026109.2ClCG01G010870Watermelon (Charleston Gray)medwcgB126
MELO3C026109.2Cla97C01G010620Watermelon (97103) v2medwmbB126
MELO3C026109.2CsaV3_1G015710Cucumber (Chinese Long) v3cucmedB025
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026109.2Cucumber (Gy14) v2cgybmedB022
MELO3C026109.2Cucurbita maxima (Rimu)cmamedB414
MELO3C026109.2Cucurbita moschata (Rifu)cmomedB410
MELO3C026109.2Cucurbita pepo (Zucchini)cpemedB035
MELO3C026109.2Cucurbita pepo (Zucchini)cpemedB556
MELO3C026109.2Silver-seed gourdcarmedB0051
MELO3C026109.2Wax gourdmedwgoB182