Csa1G181310 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G181310
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Photosystem II oxygen evolving complex protein PsbP (Precursor); contains IPR002683 (Photosystem II PsbP, oxygen evolving complex)
Location	Chr1 : 10966078 .. 10967884 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAGAAGTTAGTGTTTCCCTTTCTCGAGATTCCTGAAAATGGCCGTAATCCTCGACTCCTTCCTACCTTCAATTCAAACACTGAGTTCTTCATTTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTGGCCTATGAATTCATTCCCCAAATGTTGCTCTGAATCTCAATCGGTAATTCTTCACAAACTGTAATCTATCTGGAACTTGTTACTTGCATTTATCGTTACCGCTATACCTTTCTAATGTATAATCAGATTAAAGGCGTTGCAGTTCCTAGGAGGAGTGCAATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAACATGCTTCTACACTTATCCTTTCCTGCTTCAATTCTGTCCATTTTTCTCATTCACTTGTTCTTTATCTGCACATTTGGTTATCATATTCAAAATGTTTAGCCCAAAATGTTTAGATTTTAAAACTACAAATCATAAATCAAATGGTTACCAAGTGAGACCGTAAGTTTCTCAACCATGGATAAATTATTAGATTTATATTCATAAGCTTAATAGATATCTTTTAAAGTGTTCAGCTCAACGAGGACAAAAGATCTCGAGTTCAAATCTCACCCCCAAGTTGTATTACAATACCTTTTAAAGTTTGATGGTCCGGAAGACAAATACAAAAACAAAATGAAACTTGTAATCTCACCTTTTAAAAACCTCTTCTAATTGTCAAAACAAAAGTTCTCTTTGGTCAAGTGTAATAGTTTCACTCGAACAAACGTTTCCAGTGTTTTCAACAGCAGAAATCACTGGCCGTGAAGCTTAGTAATAAGCAACAGAAAACCAGAATGTTGTAAGAGTAGCACTTCAAAGATTGTTGTGAGCTGTGGCATTCTAGTTTTCGTTATATATGTATGTGATGAAGTTTGAAATTTCATAGTTCAATGCTTAACATTTAACATTAATAATGTAATGTCCAGATTTGGTTTATTTATTTATTTATGCTTTTTTTTTACCCTTGAAAAGTTACATTTATTTTGAAACTTATTCGAGACAAGAAATGACATTTAAACTTGAAGGGCTTAGTGCAACTTTGAATGGAACTAACCCATAGGTTATAAGTTTAAGTTAATCCTTAATATGTTGATCTCTATTTCTTCAAATATAAAGTCATATGCTAACAACAATAATCCATATATATCTTACAATTATATGATATCAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGAAATGTTTTTGAGGGTTTTCAGGTGTAATTGCTGA

mRNA sequence

ATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGA

Coding sequence (CDS)

ATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGA

Protein sequence

MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKVNA*

Homology

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BLAST of Csa1G181310 vs. Swiss-Prot
Match: PPD1_ARATH (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.2e-84
Identity = 156/203 (76.85%), Postives = 174/203 (85.71%), Query Frame = 1


Query: 1   MALMLSTCIFSNSALAV---SSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFV 60
           M L++S  I S + L     S+    EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP V
Sbjct: 85  MGLLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVV 144

Query: 61  LDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSR 120
           LDENLSVEFSSPSSS Y S++DLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR
Sbjct: 145 LDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSR 204

Query: 121 MADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTP 180
           +ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL+VLGVEN RLY +RLQTP
Sbjct: 205 VADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTP 264

Query: 181 ENVFVEEENDLRQVMDSFRVNKV 201
           E VF+EEE DLR+VMDSFRV K+
Sbjct: 265 EKVFLEEEKDLRRVMDSFRVEKI 287

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BLAST of Csa1G181310 vs. TrEMBL
Match: A0A0A0LTD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 1.5e-108
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


Query: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 181 FVEEENDLRQVMDSFRVNKVNA 203
           FVEEENDLRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

[Close]

BLAST of Csa1G181310 vs. TrEMBL
Match: B9RFL8_RICCO (Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1435730 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.2e-94
Identity = 178/205 (86.83%), Postives = 192/205 (93.66%), Query Frame = 1


Query: 1   MALMLSTCI-----FSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 60
           MAL+ S+CI     F +SALA SSVG  EYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP
Sbjct: 61  MALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120

Query: 61  FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 120
           +VLDENLSVE SSPSSS+Y SV+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRES+ILSTS
Sbjct: 121 YVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILSTS 180

Query: 121 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 180
           SR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDRVVRLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 181 SRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELRLQ 240

Query: 181 TPENVFVEEENDLRQVMDSFRVNKV 201
           TPENVFVEEENDLRQVM+SFRVNKV
Sbjct: 241 TPENVFVEEENDLRQVMESFRVNKV 265

[Close]

BLAST of Csa1G181310 vs. TrEMBL
Match: A0A061F332_THECC (Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao GN=TCM_026794 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 6.1e-94
Identity = 178/207 (85.99%), Postives = 191/207 (92.27%), Query Frame = 1


Query: 1   MALMLSTCIFS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 60
           MAL+LS+CIFS     + A A  SVGL EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP
Sbjct: 79  MALILSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 138

Query: 61  FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 120
           +VLDENLSVE SSPSSSRY +V+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 139 YVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 198

Query: 121 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 180
           SR+ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 199 SRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQ 258

Query: 181 TPENVFVEEENDLRQVMDSFRVNKVNA 203
           TPENVFVEEENDLRQVMDSFRVNKV +
Sbjct: 259 TPENVFVEEENDLRQVMDSFRVNKVTS 285

[Close]

BLAST of Csa1G181310 vs. TrEMBL
Match: A0A061F3V9_THECC (Photosystem II reaction center PsbP family protein isoform 2 OS=Theobroma cacao GN=TCM_026794 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 6.1e-94
Identity = 178/207 (85.99%), Postives = 191/207 (92.27%), Query Frame = 1


Query: 1   MALMLSTCIFS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 60
           MAL+LS+CIFS     + A A  SVGL EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP
Sbjct: 48  MALILSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 107

Query: 61  FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 120
           +VLDENLSVE SSPSSSRY +V+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILSTS
Sbjct: 108 YVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 167

Query: 121 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 180
           SR+ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 168 SRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQ 227

Query: 181 TPENVFVEEENDLRQVMDSFRVNKVNA 203
           TPENVFVEEENDLRQVMDSFRVNKV +
Sbjct: 228 TPENVFVEEENDLRQVMDSFRVNKVTS 254

[Close]

BLAST of Csa1G181310 vs. TrEMBL
Match: A0A059AXM1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01287 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 8.0e-94
Identity = 175/207 (84.54%), Postives = 190/207 (91.79%), Query Frame = 1


Query: 1   MALMLSTCIF-----SNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 60
           MAL+LS+CIF      N ALA  SV   EYIDTFDGYSFKYP+NW+QVRGAGADIFFRDP
Sbjct: 108 MALILSSCIFLRVGLGNIALAQPSVAFREYIDTFDGYSFKYPQNWVQVRGAGADIFFRDP 167

Query: 61  FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 120
           +VLDENLSVEFSSPSSS Y SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN++STS
Sbjct: 168 YVLDENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNVVSTS 227

Query: 121 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 180
           SR+ADDG+ YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELR+Q
Sbjct: 228 SRIADDGKMYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRIQ 287

Query: 181 TPENVFVEEENDLRQVMDSFRVNKVNA 203
           TPENVF+EEEN++RQVMDSFRVN V +
Sbjct: 288 TPENVFLEEENEIRQVMDSFRVNMVTS 314

[Close]

BLAST of Csa1G181310 vs. TAIR10
Match: AT4G15510.1 (AT4G15510.1 Photosystem II reaction center PsbP family protein)

HSP 1 Score: 313.2 bits (801), Expect = 1.2e-85
Identity = 156/203 (76.85%), Postives = 174/203 (85.71%), Query Frame = 1


Query: 1   MALMLSTCIFSNSALAV---SSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFV 60
           M L++S  I S + L     S+    EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP V
Sbjct: 85  MGLLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVV 144

Query: 61  LDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSR 120
           LDENLSVEFSSPSSS Y S++DLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR
Sbjct: 145 LDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSR 204

Query: 121 MADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTP 180
           +ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL+VLGVEN RLY +RLQTP
Sbjct: 205 VADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTP 264

Query: 181 ENVFVEEENDLRQVMDSFRVNKV 201
           E VF+EEE DLR+VMDSFRV K+
Sbjct: 265 EKVFLEEEKDLRRVMDSFRVEKI 287

[Close]

BLAST of Csa1G181310 vs. NCBI nr
Match: gi|449443516|ref|XP_004139523.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 400.2 bits (1027), Expect = 2.1e-108
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


Query: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 57  MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 116

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 117 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 176

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 177 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 236

Query: 181 FVEEENDLRQVMDSFRVNKVNA 203
           FVEEENDLRQVMDSFRVNKVNA
Sbjct: 237 FVEEENDLRQVMDSFRVNKVNA 258

[Close]

BLAST of Csa1G181310 vs. NCBI nr
Match: gi|778659702|ref|XP_011654885.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 400.2 bits (1027), Expect = 2.1e-108
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


Query: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 181 FVEEENDLRQVMDSFRVNKVNA 203
           FVEEENDLRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

[Close]

BLAST of Csa1G181310 vs. NCBI nr
Match: gi|659128677|ref|XP_008464319.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 2.0e-106
Identity = 198/202 (98.02%), Postives = 200/202 (99.01%), Query Frame = 1


Query: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60
           MAL+LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 57  MALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 116

Query: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 117 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 176

Query: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 177 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 236

Query: 181 FVEEENDLRQVMDSFRVNKVNA 203
           FVEEEN+LRQVMDSFRVNKVNA
Sbjct: 237 FVEEENELRQVMDSFRVNKVNA 258

[Close]

BLAST of Csa1G181310 vs. NCBI nr
Match: gi|255542948|ref|XP_002512537.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus communis])

HSP 1 Score: 354.0 bits (907), Expect = 1.8e-94
Identity = 178/205 (86.83%), Postives = 192/205 (93.66%), Query Frame = 1


Query: 1   MALMLSTCI-----FSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 60
           MAL+ S+CI     F +SALA SSVG  EYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP
Sbjct: 61  MALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120

Query: 61  FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 120
           +VLDENLSVE SSPSSS+Y SV+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRES+ILSTS
Sbjct: 121 YVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILSTS 180

Query: 121 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 180
           SR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDRVVRLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 181 SRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELRLQ 240

Query: 181 TPENVFVEEENDLRQVMDSFRVNKV 201
           TPENVFVEEENDLRQVM+SFRVNKV
Sbjct: 241 TPENVFVEEENDLRQVMESFRVNKV 265

[Close]

BLAST of Csa1G181310 vs. NCBI nr
Match: gi|1000980679|ref|XP_015570448.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Ricinus communis])

HSP 1 Score: 354.0 bits (907), Expect = 1.8e-94
Identity = 178/205 (86.83%), Postives = 192/205 (93.66%), Query Frame = 1


Query: 1   MALMLSTCI-----FSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 60
           MAL+ S+CI     F +SALA SSVG  EYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP
Sbjct: 1   MALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 60

Query: 61  FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 120
           +VLDENLSVE SSPSSS+Y SV+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRES+ILSTS
Sbjct: 61  YVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILSTS 120

Query: 121 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 180
           SR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDRVVRLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 121 SRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELRLQ 180

Query: 181 TPENVFVEEENDLRQVMDSFRVNKV 201
           TPENVFVEEENDLRQVM+SFRVNKV
Sbjct: 181 TPENVFVEEENDLRQVMESFRVNKV 205

The following BLAST results are available for this feature:

BLAST of Csa1G181310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPD1_ARATH	2.2e-84	76.85	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 ...	[more]

BLAST of Csa1G181310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTD2_CUCSA	1.5e-108	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1	[more]
B9RFL8_RICCO	1.2e-94	86.83	Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN...	[more]
A0A061F332_THECC	6.1e-94	85.99	Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao ...	[more]
A0A061F3V9_THECC	6.1e-94	85.99	Photosystem II reaction center PsbP family protein isoform 2 OS=Theobroma cacao ...	[more]
A0A059AXM1_EUCGR	8.0e-94	84.54	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01287 PE=4 SV=1	[more]

BLAST of Csa1G181310 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15510.1	1.2e-85	76.85	Photosystem II reaction center PsbP family protein	[more]

BLAST of Csa1G181310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443516\|ref\|XP_004139523.1\|	2.1e-108	100.00	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis s...	[more]
gi\|778659702\|ref\|XP_011654885.1\|	2.1e-108	100.00	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis s...	[more]
gi\|659128677\|ref\|XP_008464319.1\|	2.0e-106	98.02	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m...	[more]
gi\|255542948\|ref\|XP_002512537.1\|	1.8e-94	86.83	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus c...	[more]
gi\|1000980679\|ref\|XP_015570448.1\|	1.8e-94	86.83	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Ricinus c...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002683	PsbP
IPR016123	Mog1/PsbP_a/b/a-sand
IPR002683	PsbP
IPR016123	Mog1/PsbP_a/b/a-sand

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU094545	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G181310.1	Csa1G181310.1	mRNA
Csa1G181310.2	Csa1G181310.2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU094545	CU094545	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 71..253 score: 6.6
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 80..253 score: 1.0
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 81..253 score: 1.31
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 2..258 score: 1.5E
None	No IPR available	PANTHER	PTHR31407:SF15	SUBFAMILY NOT NAMED	coord: 2..258 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G181310	Cla010961	Watermelon (97103) v1	cuwmB042
Csa1G181310	MELO3C026109	Melon (DHL92) v3.5.1	cumeB000
Csa1G181310	ClCG01G010870	Watermelon (Charleston Gray)	cuwcgB022
Csa1G181310	Lsi02G011470	Bottle gourd (USVL1VR-Ls)	culsiB032
Csa1G181310	MELO3C026109.2	Melon (DHL92) v3.6.1	cumedB024
Csa1G181310	Cla97C01G010620	Watermelon (97103) v2	cuwmbB009
Csa1G181310	CSPI01G15570	Wild cucumber (PI 183967)	cpicuB000
Csa1G181310	Cucsa.180670	Cucumber (Gy14) v1	cgycuB276
Csa1G181310	CsGy1G015300	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G181310	Cucumber (Gy14) v1	cgycuB016
Csa1G181310	Cucurbita maxima (Rimu)	cmacuB210
Csa1G181310	Cucurbita maxima (Rimu)	cmacuB399
Csa1G181310	Cucurbita moschata (Rifu)	cmocuB196
Csa1G181310	Cucurbita moschata (Rifu)	cmocuB382
Csa1G181310	Watermelon (Charleston Gray)	cuwcgB019
Csa1G181310	Watermelon (97103) v1	cuwmB048
Csa1G181310	Cucurbita pepo (Zucchini)	cpecuB020
Csa1G181310	Cucurbita pepo (Zucchini)	cpecuB056
Csa1G181310	Bottle gourd (USVL1VR-Ls)	culsiB020
Csa1G181310	Bottle gourd (USVL1VR-Ls)	culsiB037
Csa1G181310	Cucumber (Gy14) v2	cgybcuB240
Csa1G181310	Silver-seed gourd	carcuB0051
Csa1G181310	Watermelon (97103) v2	cuwmbB005
Csa1G181310	Wax gourd	cuwgoB036
Csa1G181310	Wax gourd	cuwgoB047