Csa1G181310.2 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G181310.2
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Photosystem II oxygen evolving complex protein PsbP (Precursor); contains IPR002683 (Photosystem II PsbP, oxygen evolving complex)
Location	Chr1 : 10966078 .. 10967884 (+)
Sequence length	777

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAGAAGTTAGTGTTTCCCTTTCTCGAGATTCCTGAAAATGGCCGTAATCCTCGACTCCTTCCTACCTTCAATTCAAACACTGAGTTCTTCATTTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTGGCCTATGAATTCATTCCCCAAATGTTGCTCTGAATCTCAATCGGTAATTCTTCACAAACTGTAATCTATCTGGAACTTGTTACTTGCATTTATCGTTACCGCTATACCTTTCTAATGTATAATCAGATTAAAGGCGTTGCAGTTCCTAGGAGGAGTGCAATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAACATGCTTCTACACTTATCCTTTCCTGCTTCAATTCTGTCCATTTTTCTCATTCACTTGTTCTTTATCTGCACATTTGGTTATCATATTCAAAATGTTTAGCCCAAAATGTTTAGATTTTAAAACTACAAATCATAAATCAAATGGTTACCAAGTGAGACCGTAAGTTTCTCAACCATGGATAAATTATTAGATTTATATTCATAAGCTTAATAGATATCTTTTAAAGTGTTCAGCTCAACGAGGACAAAAGATCTCGAGTTCAAATCTCACCCCCAAGTTGTATTACAATACCTTTTAAAGTTTGATGGTCCGGAAGACAAATACAAAAACAAAATGAAACTTGTAATCTCACCTTTTAAAAACCTCTTCTAATTGTCAAAACAAAAGTTCTCTTTGGTCAAGTGTAATAGTTTCACTCGAACAAACGTTTCCAGTGTTTTCAACAGCAGAAATCACTGGCCGTGAAGCTTAGTAATAAGCAACAGAAAACCAGAATGTTGTAAGAGTAGCACTTCAAAGATTGTTGTGAGCTGTGGCATTCTAGTTTTCGTTATATATGTATGTGATGAAGTTTGAAATTTCATAGTTCAATGCTTAACATTTAACATTAATAATGTAATGTCCAGATTTGGTTTATTTATTTATTTATGCTTTTTTTTTACCCTTGAAAAGTTACATTTATTTTGAAACTTATTCGAGACAAGAAATGACATTTAAACTTGAAGGGCTTAGTGCAACTTTGAATGGAACTAACCCATAGGTTATAAGTTTAAGTTAATCCTTAATATGTTGATCTCTATTTCTTCAAATATAAAGTCATATGCTAACAACAATAATCCATATATATCTTACAATTATATGATATCAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGAAATGTTTTTGAGGGTTTTCAGGTGTAATTGCTGA

mRNA sequence

ATGGCCGTAATCCTCGACTCCTTCCTACCTTCAATTCAAACACTGAGTTCTTCATTTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTGGCCTATGAATTCATTCCCCAAATGTTGCTCTGAATCTCAATCGATTAAAGGCGTTGCAGTTCCTAGGAGGAGTGCAATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGA

Coding sequence (CDS)

ATGGCCGTAATCCTCGACTCCTTCCTACCTTCAATTCAAACACTGAGTTCTTCATTTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTGGCCTATGAATTCATTCCCCAAATGTTGCTCTGAATCTCAATCGATTAAAGGCGTTGCAGTTCCTAGGAGGAGTGCAATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGA

Protein sequence

MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKVNA*

Homology

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BLAST of Csa1G181310.2 vs. Swiss-Prot
Match: PPD1_ARATH (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.5e-85
Identity = 158/221 (71.49%), Postives = 182/221 (82.35%), Query Frame = 1


Query: 39  CCSESQSIKGVAVPRRSAMALMLSTCIFSNSALAV---SSVGLLEYIDTFDGYSFKYPKN 98
           C ++++ +  V   +   M L++S  I S + L     S+    EYIDTFDGYSFKYP+N
Sbjct: 67  CLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQN 126

Query: 99  WIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFM 158
           WIQVRGAGADIFFRDP VLDENLSVEFSSPSSS Y S++DLG PEE GK+VL+QYLTEFM
Sbjct: 127 WIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFM 186

Query: 159 STRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYL 218
           STRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL
Sbjct: 187 STRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYL 246

Query: 219 SVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 257
           +VLGVEN RLY +RLQTPE VF+EEE DLR+VMDSFRV K+
Sbjct: 247 AVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

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BLAST of Csa1G181310.2 vs. TrEMBL
Match: A0A0A0LTD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 1.9e-108
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


Query: 57  MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 116
           MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 117 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 176
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 177 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 236
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 237 FVEEENDLRQVMDSFRVNKVNA 259
           FVEEENDLRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

[Close]

BLAST of Csa1G181310.2 vs. TrEMBL
Match: B9RFL8_RICCO (Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1435730 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 3.1e-103
Identity = 200/265 (75.47%), Postives = 223/265 (84.15%), Query Frame = 1


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCS----ESQSIKGVAVPRRSA 60
           MA ILDSFLP +   S +    + S  S   P+++    C+    ++Q  K  AVPRRS 
Sbjct: 1   MATILDSFLPPVHLTSPTRPAFLSSWFSCSLPISADSTRCTSISCKNQPTKAFAVPRRST 60

Query: 61  MALMLSTCI-----FSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120
           MAL+ S+CI     F +SALA SSVG  EYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP
Sbjct: 61  MALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120

Query: 121 FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180
           +VLDENLSVE SSPSSS+Y SV+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRES+ILSTS
Sbjct: 121 YVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILSTS 180

Query: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240
           SR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDRVVRLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 181 SRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELRLQ 240

Query: 241 TPENVFVEEENDLRQVMDSFRVNKV 257
           TPENVFVEEENDLRQVM+SFRVNKV
Sbjct: 241 TPENVFVEEENDLRQVMESFRVNKV 265

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BLAST of Csa1G181310.2 vs. TrEMBL
Match: A0A061F332_THECC (Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao GN=TCM_026794 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.5e-102
Identity = 199/263 (75.67%), Postives = 220/263 (83.65%), Query Frame = 1


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MA ILDS LP         R  +P+  ST +P +S      ++Q  K  A+PRR+AMAL+
Sbjct: 30  MATILDSLLPPS-------RPTLPTRLSTPFPSSSSCISTRKTQKTKAFALPRRNAMALI 89

Query: 61  LSTCIFS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD 120
           LS+CIFS     + A A  SVGL EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP+VLD
Sbjct: 90  LSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPYVLD 149

Query: 121 ENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA 180
           ENLSVE SSPSSSRY +V+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILSTSSR+A
Sbjct: 150 ENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRVA 209

Query: 181 DDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN 240
           DDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQTPEN
Sbjct: 210 DDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQTPEN 269

Query: 241 VFVEEENDLRQVMDSFRVNKVNA 259
           VFVEEENDLRQVMDSFRVNKV +
Sbjct: 270 VFVEEENDLRQVMDSFRVNKVTS 285

[Close]

BLAST of Csa1G181310.2 vs. TrEMBL
Match: E5LBM4_GOSHI (PsbP domain protein 1 OS=Gossypium hirsutum GN=PPD1 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 2.9e-101
Identity = 199/262 (75.95%), Postives = 220/262 (83.97%), Query Frame = 1


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MA+ILDS LP    LS   R  +P+  ST +P ++   C   +QS +  ++PRR+AMAL+
Sbjct: 1   MAIILDSLLP----LS---RPTLPARLSTPFPPSASCLCTRRNQSFQASSIPRRNAMALI 60

Query: 61  LSTCIFS------NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           LST IFS      N A A  SVG  EYIDTFDGYS KYP+NWIQVRGAGADIFFRDP+VL
Sbjct: 61  LSTYIFSEVGLHDNIAFAEPSVGFREYIDTFDGYSLKYPQNWIQVRGAGADIFFRDPYVL 120

Query: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DENLSVE SSPSSSRY +V+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSR+
Sbjct: 121 DENLSVELSSPSSSRYKTVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRV 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENDLRQVMDSFRVNKV 257
           +VFVEEENDLRQVMDSFRVNKV
Sbjct: 241 SVFVEEENDLRQVMDSFRVNKV 255

[Close]

BLAST of Csa1G181310.2 vs. TrEMBL
Match: A0A0D2W809_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G208300 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 3.8e-101
Identity = 199/262 (75.95%), Postives = 219/262 (83.59%), Query Frame = 1


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MA+ILDS LP    LS   R  +P+  ST +P  +   C   +QS +  ++PRR+AMAL+
Sbjct: 1   MAIILDSLLP----LS---RPTLPARLSTPFPPPASRLCTRRNQSFQAFSIPRRNAMALI 60

Query: 61  LSTCIFS------NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           LST IFS      N A A  SVG  EYIDTFDGYS KYP+NWIQVRGAGADIFFRDP+VL
Sbjct: 61  LSTYIFSEVGLHDNIAFAEPSVGFREYIDTFDGYSLKYPQNWIQVRGAGADIFFRDPYVL 120

Query: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DENLSVE SSPSSSRY +V+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSR+
Sbjct: 121 DENLSVELSSPSSSRYKTVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRV 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENDLRQVMDSFRVNKV 257
           +VFVEEENDLRQVMDSFRVNKV
Sbjct: 241 SVFVEEENDLRQVMDSFRVNKV 255

[Close]

BLAST of Csa1G181310.2 vs. TAIR10
Match: AT4G15510.1 (AT4G15510.1 Photosystem II reaction center PsbP family protein)

HSP 1 Score: 317.4 bits (812), Expect = 8.2e-87
Identity = 158/221 (71.49%), Postives = 182/221 (82.35%), Query Frame = 1


Query: 39  CCSESQSIKGVAVPRRSAMALMLSTCIFSNSALAV---SSVGLLEYIDTFDGYSFKYPKN 98
           C ++++ +  V   +   M L++S  I S + L     S+    EYIDTFDGYSFKYP+N
Sbjct: 67  CLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQN 126

Query: 99  WIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFM 158
           WIQVRGAGADIFFRDP VLDENLSVEFSSPSSS Y S++DLG PEE GK+VL+QYLTEFM
Sbjct: 127 WIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFM 186

Query: 159 STRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYL 218
           STRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL
Sbjct: 187 STRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYL 246

Query: 219 SVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 257
           +VLGVEN RLY +RLQTPE VF+EEE DLR+VMDSFRV K+
Sbjct: 247 AVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

[Close]

BLAST of Csa1G181310.2 vs. NCBI nr
Match: gi|449443516|ref|XP_004139523.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 509.6 bits (1311), Expect = 3.2e-141
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM
Sbjct: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60

Query: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120
           LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240
           YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 241 ENDLRQVMDSFRVNKVNA 259
           ENDLRQVMDSFRVNKVNA
Sbjct: 241 ENDLRQVMDSFRVNKVNA 258

[Close]

BLAST of Csa1G181310.2 vs. NCBI nr
Match: gi|659128677|ref|XP_008464319.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 479.6 bits (1233), Expect = 3.5e-132
Identity = 244/258 (94.57%), Postives = 250/258 (96.90%), Query Frame = 1


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MAVIL SFLPSIQTL+S  RQRIPSTSSTR P+ SFPKCCS+SQSIK VAVPRR+AMAL+
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRSPIISFPKCCSQSQSIKDVAVPRRNAMALI 60

Query: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120
           LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240
           YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 241 ENDLRQVMDSFRVNKVNA 259
           EN+LRQVMDSFRVNKVNA
Sbjct: 241 ENELRQVMDSFRVNKVNA 258

[Close]

BLAST of Csa1G181310.2 vs. NCBI nr
Match: gi|778659702|ref|XP_011654885.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 400.2 bits (1027), Expect = 2.7e-108
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


Query: 57  MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 116
           MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 117 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 176
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 177 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 236
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 237 FVEEENDLRQVMDSFRVNKVNA 259
           FVEEENDLRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

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BLAST of Csa1G181310.2 vs. NCBI nr
Match: gi|255542948|ref|XP_002512537.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus communis])

HSP 1 Score: 382.9 bits (982), Expect = 4.5e-103
Identity = 200/265 (75.47%), Postives = 223/265 (84.15%), Query Frame = 1


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCS----ESQSIKGVAVPRRSA 60
           MA ILDSFLP +   S +    + S  S   P+++    C+    ++Q  K  AVPRRS 
Sbjct: 1   MATILDSFLPPVHLTSPTRPAFLSSWFSCSLPISADSTRCTSISCKNQPTKAFAVPRRST 60

Query: 61  MALMLSTCI-----FSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120
           MAL+ S+CI     F +SALA SSVG  EYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP
Sbjct: 61  MALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120

Query: 121 FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 180
           +VLDENLSVE SSPSSS+Y SV+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRES+ILSTS
Sbjct: 121 YVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILSTS 180

Query: 181 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQ 240
           SR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDRVVRLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 181 SRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELRLQ 240

Query: 241 TPENVFVEEENDLRQVMDSFRVNKV 257
           TPENVFVEEENDLRQVM+SFRVNKV
Sbjct: 241 TPENVFVEEENDLRQVMESFRVNKV 265

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BLAST of Csa1G181310.2 vs. NCBI nr
Match: gi|590644876|ref|XP_007031203.1| (Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 379.4 bits (973), Expect = 5.0e-102
Identity = 199/263 (75.67%), Postives = 220/263 (83.65%), Query Frame = 1


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MA ILDS LP         R  +P+  ST +P +S      ++Q  K  A+PRR+AMAL+
Sbjct: 30  MATILDSLLPPS-------RPTLPTRLSTPFPSSSSCISTRKTQKTKAFALPRRNAMALI 89

Query: 61  LSTCIFS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD 120
           LS+CIFS     + A A  SVGL EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP+VLD
Sbjct: 90  LSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPYVLD 149

Query: 121 ENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA 180
           ENLSVE SSPSSSRY +V+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILSTSSR+A
Sbjct: 150 ENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRVA 209

Query: 181 DDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN 240
           DDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVEN+RLYELRLQTPEN
Sbjct: 210 DDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQTPEN 269

Query: 241 VFVEEENDLRQVMDSFRVNKVNA 259
           VFVEEENDLRQVMDSFRVNKV +
Sbjct: 270 VFVEEENDLRQVMDSFRVNKVTS 285

The following BLAST results are available for this feature:

BLAST of Csa1G181310.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPD1_ARATH	1.5e-85	71.49	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 ...	[more]

BLAST of Csa1G181310.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTD2_CUCSA	1.9e-108	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1	[more]
B9RFL8_RICCO	3.1e-103	75.47	Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN...	[more]
A0A061F332_THECC	3.5e-102	75.67	Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao ...	[more]
E5LBM4_GOSHI	2.9e-101	75.95	PsbP domain protein 1 OS=Gossypium hirsutum GN=PPD1 PE=4 SV=1	[more]
A0A0D2W809_GOSRA	3.8e-101	75.95	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G208300 PE=4 SV=1	[more]

BLAST of Csa1G181310.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15510.1	8.2e-87	71.49	Photosystem II reaction center PsbP family protein	[more]

BLAST of Csa1G181310.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443516\|ref\|XP_004139523.1\|	3.2e-141	100.00	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis s...	[more]
gi\|659128677\|ref\|XP_008464319.1\|	3.5e-132	94.57	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m...	[more]
gi\|778659702\|ref\|XP_011654885.1\|	2.7e-108	100.00	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis s...	[more]
gi\|255542948\|ref\|XP_002512537.1\|	4.5e-103	75.47	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus c...	[more]
gi\|590644876\|ref\|XP_007031203.1\|	5.0e-102	75.67	Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002683	PsbP
IPR016123	Mog1/PsbP_a/b/a-sand

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0048564	photosystem I assembly
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005509	calcium ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G181310	Csa1G181310	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G181310.2	Csa1G181310.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G181310.2.utr5p1	Csa1G181310.2.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G181310.2.cds1	Csa1G181310.2.cds1	CDS
Csa1G181310.2.cds2	Csa1G181310.2.cds2	CDS
Csa1G181310.2.cds3	Csa1G181310.2.cds3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G181310.2.utr3p1	Csa1G181310.2.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 71..253 score: 6.6
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 80..253 score: 1.0
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 81..253 score: 1.31
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 2..258 score: 1.5E
None	No IPR available	PANTHER	PTHR31407:SF15	SUBFAMILY NOT NAMED	coord: 2..258 score: 1.5E