CU094545 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU094545
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	PsbP domain protein 1
Location	Chr1 : 10966069 .. 10967865 (+)
Sequence length	871

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTCGAGCGGCCGCCCGGGCAGGTACGCGGGGAACGATCAGAAAGAGAAGTTAGTGTTTCCCTTTCTCGAGATTCCTGAAAATGGCCGTAATCCTCGACTCCTTCCTACCTTCAATTCAAACACTGAGTTCTTCATTTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTGGCCTATGAATTCATTCCCCAAATGTTGCTCTGAATCTCAATCGATTAAAGGCGTTGCAGTTCCTAGGAGGAGTGCAATGGCGTTGATGTTGTCCACTTGTATTTCCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGCGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGAAATGTTTTTGAGGG

Library


Library category	ESTs
other	1
fruit (8DPP) library	5
gynoecious flower library	1
Cucumber leaf library	1

Homology

[Close]

BLAST of CU094545 vs. Swiss-Prot
Match: PPD1_ARATH (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.2e-85
Identity = 157/221 (71.04%), Postives = 181/221 (81.90%), Query Frame = 3


Query: 195 CCSESQSIKGVAVPRRSAMALMLSTCISSNSALAV---SSVGLLEYIDTFDGYSFKYPKN 254
           C ++++ +  V   +   M L++S  I S + L     S+    EYIDTFDGYSFKYP+N
Sbjct: 67  CLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQN 126

Query: 255 WIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFM 314
           WIQVRGAGADIFFRDP VLDENLSVEFSSPSSS Y S++DLG PEE GK+VL+QYLTEFM
Sbjct: 127 WIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFM 186

Query: 315 STRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYL 374
           STRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYANNNELAVMPQDR  RLEW+RRYL
Sbjct: 187 STRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYL 246

Query: 375 SVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 434
           +VLGVEN RLY +RLQTPE VF+EEE DLR+VMDSFRV K+
Sbjct: 247 AVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

Query: 435  494
           
Sbjct: 307  287

Query: 495  554
           
Sbjct: 367  287

Query: 555  614
           
Sbjct: 427  287

Query: 615  674
           
Sbjct: 487  287

Query: 675  734
           
Sbjct: 547  287

Query: 735  794
           
Sbjct: 607  287

Query: 795  849
           
Sbjct: 667  287

[Close]

BLAST of CU094545 vs. TrEMBL
Match: A0A0A0LTD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 5.2e-107
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 3


Query: 249 MALMLSTCISSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 308
           MALMLSTCI SNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 309 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 368
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 369 DGRTYYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYLSVLGVENSRLYELRLQTPENV 428
           DGRTYYQVEVNIKSYANNNELAVMPQDR VRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 429 FVEEENDLRQVMDSFRVNKVNA 488
           FVEEENDLRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

Query: 489  548
           
Sbjct: 241  202

Query: 549  608
           
Sbjct: 301  202

Query: 609  668
           
Sbjct: 361  202

Query: 669  728
           
Sbjct: 421  202

Query: 729  788
           
Sbjct: 481  202

Query: 789  848
           
Sbjct: 541  202

Query: 849  855
           
Sbjct: 601  202

[Close]

BLAST of CU094545 vs. TrEMBL
Match: B9RFL8_RICCO (Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1435730 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 2.3e-102
Identity = 199/265 (75.09%), Postives = 222/265 (83.77%), Query Frame = 3


Query: 81  MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCS----ESQSIKGVAVPRRSA 140
           MA ILDSFLP +   S +    + S  S   P+++    C+    ++Q  K  AVPRRS 
Sbjct: 1   MATILDSFLPPVHLTSPTRPAFLSSWFSCSLPISADSTRCTSISCKNQPTKAFAVPRRST 60

Query: 141 MALMLSTCISS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 200
           MAL+ S+CI S     +SALA SSVG  EYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP
Sbjct: 61  MALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120

Query: 201 FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 260
           +VLDENLSVE SSPSSS+Y SV+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRES+ILSTS
Sbjct: 121 YVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILSTS 180

Query: 261 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYLSVLGVENSRLYELRLQ 320
           SR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDR VRLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 181 SRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELRLQ 240

Query: 321 TPENVFVEEENDLRQVMDSFRVNKV 380
           TPENVFVEEENDLRQVM+SFRVNKV
Sbjct: 241 TPENVFVEEENDLRQVMESFRVNKV 265

Query: 381  440
           
Sbjct: 301  265

Query: 441  500
           
Sbjct: 361  265

Query: 501  560
           
Sbjct: 421  265

Query: 561  620
           
Sbjct: 481  265

Query: 621  680
           
Sbjct: 541  265

Query: 681  740
           
Sbjct: 601  265

Query: 741  800
           
Sbjct: 661  265

Query: 801  849
           
Sbjct: 721  265

[Close]

BLAST of CU094545 vs. TrEMBL
Match: A0A061F332_THECC (Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao GN=TCM_026794 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.9e-102
Identity = 199/268 (74.25%), Postives = 222/268 (82.84%), Query Frame = 3


Query: 66  SRFLKMAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRS 125
           +R+ KMA ILDS LP         R  +P+  ST +P +S      ++Q  K  A+PRR+
Sbjct: 25  ARYRKMATILDSLLPPS-------RPTLPTRLSTPFPSSSSCISTRKTQKTKAFALPRRN 84

Query: 126 AMALMLSTCISS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRD 185
           AMAL+LS+CI S     + A A  SVGL EYIDTFDGYSFKYP+NWIQVRGAGADIFFRD
Sbjct: 85  AMALILSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRD 144

Query: 186 PFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILST 245
           P+VLDENLSVE SSPSSSRY +V+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILST
Sbjct: 145 PYVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILST 204

Query: 246 SSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYLSVLGVENSRLYELRL 305
           SSR+ADDG+ YYQVEVNIKSYAN NELAVMPQDR  RLEW+RRYLSVLGVEN+RLYELRL
Sbjct: 205 SSRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRL 264

Query: 306 QTPENVFVEEENDLRQVMDSFRVNKVNA 365
           QTPENVFVEEENDLRQVMDSFRVNKV +
Sbjct: 265 QTPENVFVEEENDLRQVMDSFRVNKVTS 285

Query: 366  425
           
Sbjct: 325  285

Query: 426  485
           
Sbjct: 385  285

Query: 486  545
           
Sbjct: 445  285

Query: 546  605
           
Sbjct: 505  285

Query: 606  665
           
Sbjct: 565  285

Query: 666  725
           
Sbjct: 625  285

Query: 726  785
           
Sbjct: 685  285

Query: 786  845
           
Sbjct: 745  285

Query: 846  855
           
Sbjct: 805  285

[Close]

BLAST of CU094545 vs. TrEMBL
Match: E5LBM4_GOSHI (PsbP domain protein 1 OS=Gossypium hirsutum GN=PPD1 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 8.1e-100
Identity = 197/262 (75.19%), Postives = 218/262 (83.21%), Query Frame = 3


Query: 81  MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 140
           MA+ILDS LP    LS   R  +P+  ST +P ++   C   +QS +  ++PRR+AMAL+
Sbjct: 1   MAIILDSLLP----LS---RPTLPARLSTPFPPSASCLCTRRNQSFQASSIPRRNAMALI 60

Query: 141 LSTCISS------NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 200
           LST I S      N A A  SVG  EYIDTFDGYS KYP+NWIQVRGAGADIFFRDP+VL
Sbjct: 61  LSTYIFSEVGLHDNIAFAEPSVGFREYIDTFDGYSLKYPQNWIQVRGAGADIFFRDPYVL 120

Query: 201 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 260
           DENLSVE SSPSSSRY +V+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSR+
Sbjct: 121 DENLSVELSSPSSSRYKTVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRV 180

Query: 261 ADDGRTYYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYLSVLGVENSRLYELRLQTPE 320
           ADDG+ YYQVEVNIKSYAN NELAVMPQDR  RLEW+RRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQTPE 240

Query: 321 NVFVEEENDLRQVMDSFRVNKV 380
           +VFVEEENDLRQVMDSFRVNKV
Sbjct: 241 SVFVEEENDLRQVMDSFRVNKV 255

Query: 381  440
           
Sbjct: 301  255

Query: 441  500
           
Sbjct: 361  255

Query: 501  560
           
Sbjct: 421  255

Query: 561  620
           
Sbjct: 481  255

Query: 621  680
           
Sbjct: 541  255

Query: 681  740
           
Sbjct: 601  255

Query: 741  800
           
Sbjct: 661  255

Query: 801  849
           
Sbjct: 721  255

[Close]

BLAST of CU094545 vs. TrEMBL
Match: A0A0D2W809_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G208300 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 1.1e-99
Identity = 197/262 (75.19%), Postives = 217/262 (82.82%), Query Frame = 3


Query: 81  MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 140
           MA+ILDS LP    LS   R  +P+  ST +P  +   C   +QS +  ++PRR+AMAL+
Sbjct: 1   MAIILDSLLP----LS---RPTLPARLSTPFPPPASRLCTRRNQSFQAFSIPRRNAMALI 60

Query: 141 LSTCISS------NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 200
           LST I S      N A A  SVG  EYIDTFDGYS KYP+NWIQVRGAGADIFFRDP+VL
Sbjct: 61  LSTYIFSEVGLHDNIAFAEPSVGFREYIDTFDGYSLKYPQNWIQVRGAGADIFFRDPYVL 120

Query: 201 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 260
           DENLSVE SSPSSSRY +V+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSR+
Sbjct: 121 DENLSVELSSPSSSRYKTVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRV 180

Query: 261 ADDGRTYYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYLSVLGVENSRLYELRLQTPE 320
           ADDG+ YYQVEVNIKSYAN NELAVMPQDR  RLEW+RRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQTPE 240

Query: 321 NVFVEEENDLRQVMDSFRVNKV 380
           +VFVEEENDLRQVMDSFRVNKV
Sbjct: 241 SVFVEEENDLRQVMDSFRVNKV 255

Query: 381  440
           
Sbjct: 301  255

Query: 441  500
           
Sbjct: 361  255

Query: 501  560
           
Sbjct: 421  255

Query: 561  620
           
Sbjct: 481  255

Query: 621  680
           
Sbjct: 541  255

Query: 681  740
           
Sbjct: 601  255

Query: 741  800
           
Sbjct: 661  255

Query: 801  849
           
Sbjct: 721  255

[Close]

BLAST of CU094545 vs. NCBI nr
Match: gi|449443516|ref|XP_004139523.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 500.4 bits (1287), Expect = 2.2e-138
Identity = 256/258 (99.22%), Postives = 256/258 (99.22%), Query Frame = 3


Query: 81  MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 140
           MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM
Sbjct: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60

Query: 141 LSTCISSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 200
           LSTCI SNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 201 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 260
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 261 YYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 320
           YYQVEVNIKSYANNNELAVMPQDR VRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 321 ENDLRQVMDSFRVNKVNA 380
           ENDLRQVMDSFRVNKVNA
Sbjct: 241 ENDLRQVMDSFRVNKVNA 258

Query: 381  440
           
Sbjct: 301  258

Query: 441  500
           
Sbjct: 361  258

Query: 501  560
           
Sbjct: 421  258

Query: 561  620
           
Sbjct: 481  258

Query: 621  680
           
Sbjct: 541  258

Query: 681  740
           
Sbjct: 601  258

Query: 741  800
           
Sbjct: 661  258

Query: 801  855
           
Sbjct: 721  258

[Close]

BLAST of CU094545 vs. NCBI nr
Match: gi|659128677|ref|XP_008464319.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 470.3 bits (1209), Expect = 2.4e-129
Identity = 242/258 (93.80%), Postives = 248/258 (96.12%), Query Frame = 3


Query: 81  MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 140
           MAVIL SFLPSIQTL+S  RQRIPSTSSTR P+ SFPKCCS+SQSIK VAVPRR+AMAL+
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRSPIISFPKCCSQSQSIKDVAVPRRNAMALI 60

Query: 141 LSTCISSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 200
           LSTCI SNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 201 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 260
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 261 YYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 320
           YYQVEVNIKSYANNNELAVMPQDR VRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 321 ENDLRQVMDSFRVNKVNA 380
           EN+LRQVMDSFRVNKVNA
Sbjct: 241 ENELRQVMDSFRVNKVNA 258

Query: 381  440
           
Sbjct: 301  258

Query: 441  500
           
Sbjct: 361  258

Query: 501  560
           
Sbjct: 421  258

Query: 561  620
           
Sbjct: 481  258

Query: 621  680
           
Sbjct: 541  258

Query: 681  740
           
Sbjct: 601  258

Query: 741  800
           
Sbjct: 661  258

Query: 801  855
           
Sbjct: 721  258

[Close]

BLAST of CU094545 vs. NCBI nr
Match: gi|778659702|ref|XP_011654885.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 2.9e-106
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 3


Query: 249 MALMLSTCISSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 308
           MALMLSTCI SNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 309 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 368
           NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 369 DGRTYYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYLSVLGVENSRLYELRLQTPENV 428
           DGRTYYQVEVNIKSYANNNELAVMPQDR VRLEWDRRYLSVLGVENSRLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 429 FVEEENDLRQVMDSFRVNKVNA 488
           FVEEENDLRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

Query: 489  548
           
Sbjct: 241  202

Query: 549  608
           
Sbjct: 301  202

Query: 609  668
           
Sbjct: 361  202

Query: 669  728
           
Sbjct: 421  202

Query: 729  788
           
Sbjct: 481  202

Query: 789  848
           
Sbjct: 541  202

Query: 849  855
           
Sbjct: 601  202

[Close]

BLAST of CU094545 vs. NCBI nr
Match: gi|255542948|ref|XP_002512537.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus communis])

HSP 1 Score: 375.6 bits (963), Expect = 8.0e-101
Identity = 199/265 (75.09%), Postives = 222/265 (83.77%), Query Frame = 3


Query: 81  MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCS----ESQSIKGVAVPRRSA 140
           MA ILDSFLP +   S +    + S  S   P+++    C+    ++Q  K  AVPRRS 
Sbjct: 1   MATILDSFLPPVHLTSPTRPAFLSSWFSCSLPISADSTRCTSISCKNQPTKAFAVPRRST 60

Query: 141 MALMLSTCISS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 200
           MAL+ S+CI S     +SALA SSVG  EYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP
Sbjct: 61  MALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFRDP 120

Query: 201 FVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTS 260
           +VLDENLSVE SSPSSS+Y SV+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRES+ILSTS
Sbjct: 121 YVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILSTS 180

Query: 261 SRMADDGRTYYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYLSVLGVENSRLYELRLQ 320
           SR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDR VRLEW+RRYLSVLGVEN+RLYELRLQ
Sbjct: 181 SRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELRLQ 240

Query: 321 TPENVFVEEENDLRQVMDSFRVNKV 380
           TPENVFVEEENDLRQVM+SFRVNKV
Sbjct: 241 TPENVFVEEENDLRQVMESFRVNKV 265

Query: 381  440
           
Sbjct: 301  265

Query: 441  500
           
Sbjct: 361  265

Query: 501  560
           
Sbjct: 421  265

Query: 561  620
           
Sbjct: 481  265

Query: 621  680
           
Sbjct: 541  265

Query: 681  740
           
Sbjct: 601  265

Query: 741  800
           
Sbjct: 661  265

Query: 801  849
           
Sbjct: 721  265

[Close]

BLAST of CU094545 vs. NCBI nr
Match: gi|590644876|ref|XP_007031203.1| (Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 375.6 bits (963), Expect = 8.0e-101
Identity = 199/268 (74.25%), Postives = 222/268 (82.84%), Query Frame = 3


Query: 66  SRFLKMAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRS 125
           +R+ KMA ILDS LP         R  +P+  ST +P +S      ++Q  K  A+PRR+
Sbjct: 25  ARYRKMATILDSLLPPS-------RPTLPTRLSTPFPSSSSCISTRKTQKTKAFALPRRN 84

Query: 126 AMALMLSTCISS-----NSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRD 185
           AMAL+LS+CI S     + A A  SVGL EYIDTFDGYSFKYP+NWIQVRGAGADIFFRD
Sbjct: 85  AMALILSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRD 144

Query: 186 PFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILST 245
           P+VLDENLSVE SSPSSSRY +V+DLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILST
Sbjct: 145 PYVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILST 204

Query: 246 SSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRAVRLEWDRRYLSVLGVENSRLYELRL 305
           SSR+ADDG+ YYQVEVNIKSYAN NELAVMPQDR  RLEW+RRYLSVLGVEN+RLYELRL
Sbjct: 205 SSRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRL 264

Query: 306 QTPENVFVEEENDLRQVMDSFRVNKVNA 365
           QTPENVFVEEENDLRQVMDSFRVNKV +
Sbjct: 265 QTPENVFVEEENDLRQVMDSFRVNKVTS 285

Query: 366  425
           
Sbjct: 325  285

Query: 426  485
           
Sbjct: 385  285

Query: 486  545
           
Sbjct: 445  285

Query: 546  605
           
Sbjct: 505  285

Query: 606  665
           
Sbjct: 565  285

Query: 666  725
           
Sbjct: 625  285

Query: 726  785
           
Sbjct: 685  285

Query: 786  845
           
Sbjct: 745  285

Query: 846  855
           
Sbjct: 805  285

The following BLAST results are available for this feature:

BLAST of CU094545 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPD1_ARATH	6.2e-85	71.04	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 ...	[more]

BLAST of CU094545 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTD2_CUCSA	5.2e-107	99.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1	[more]
B9RFL8_RICCO	2.3e-102	75.09	Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN...	[more]
A0A061F332_THECC	3.9e-102	74.25	Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao ...	[more]
E5LBM4_GOSHI	8.1e-100	75.19	PsbP domain protein 1 OS=Gossypium hirsutum GN=PPD1 PE=4 SV=1	[more]
A0A0D2W809_GOSRA	1.1e-99	75.19	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G208300 PE=4 SV=1	[more]

BLAST of CU094545 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443516\|ref\|XP_004139523.1\|	2.2e-138	99.22	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis s...	[more]
gi\|659128677\|ref\|XP_008464319.1\|	2.4e-129	93.80	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m...	[more]
gi\|778659702\|ref\|XP_011654885.1\|	2.9e-106	99.01	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis s...	[more]
gi\|255542948\|ref\|XP_002512537.1\|	8.0e-101	75.09	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus c...	[more]
gi\|590644876\|ref\|XP_007031203.1\|	8.0e-101	74.25	Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002683	PsbP
IPR016123	Mog1/PsbP_a/b/a-sand

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G181310	Csa1G181310	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FC556798	FC556798	EST
FKNP3UI02K5U2N	FKNP3UI02K5U2N	EST
FKNP3UI02KF8CL	FKNP3UI02KF8CL	EST
FKNP3UI02LCQVY	FKNP3UI02LCQVY	EST
FKNP3UI02MJ40O	FKNP3UI02MJ40O	EST
FKNP3UI02NC763	FKNP3UI02NC763	EST
G0132493	G0132493	EST
RG5_A02	RG5_A02	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 97..280 score: 6.1
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 107..280 score: 5.5
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 108..280 score: 1.62
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 66..285 score: 9.3E
None	No IPR available	PANTHER	PTHR31407:SF15	SUBFAMILY NOT NAMED	coord: 66..285 score: 9.3E