CmoCh10G012460 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G012460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionChloroplast oxygen-evolving complex/thylakoid lumenal 25.6kDa protein
LocationCmo_Chr10 : 12566640 .. 12567512 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTAATCCTCGATTCCTTCTTACCTCCAATTCACACACTCAGTTCTTCATCTCGGAAATGGATTCCAACCGCTTCCTCGTCTCCGCGATGGCCGCCGATCGATTCATCCCCCAAATGTCGCTTCTCACTGAGTTCTGAATCTCAACCGGTAATTCTTCCAAAATCACTACACAAACTGTAATCTGGAACTTGTTGCTTGCATTTATCGGCATCGCTTTCTAATATGTAACCAGATTAAAGCCGTTGCAGTTCCGAGGAGGAGTGCAATGGCGTTGATCTTGTAATCTGGAACTTGTTGCTTGCATTTATCGCTATCGCTTTCTAATGTGTAATCAGATTAAAGCCCTTGCAGTTCCGAGGAGGAGTGCAATGGCGTTGATCTTGTAATCTGGAACTTGTTGCTTGCATTTATCGCTATCGCTTTCTAATGTGTAATCAGATTAAAGCCCTTGCAGTTCCGAGGAGGAGTGCGATGGCGTTGATCTTGTCCTCTTGTATTTTCTCGAATTCGGCATTGGCTGAGCAATCTGTTGGATTATTGGAATACATTGACACATTTGATGGCTATTCGTTCAATTACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATATTCTTTAGGGATCCGTTTGTTCTTGATGAGAATATTTCCGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAAGAGCGTTGAGGATTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAACAGTATTTGACAGAGTTCATGTCTACCAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCAAGAATGGCGGATGATGGCAGGACTTACTACCAAGTTGAGGTAATGTGA

mRNA sequence

ATGGCTGTAATCCTCGATTCCTTCTTACCTCCAATTCACACACTCAGTTCTTCATCTCGGAAATGGATTCCAACCGCTTCCTCGTCTCCGCGATGGCCGCCGATCGATTCATCCCCCAAATGTCGCTTCTCACTGAGTTCTGAATCTCAACCGGTAATTCTTCCAAAATCACTACACAAACTTTCCGAGGAGGAGTGCAATGGCGTTGATCTTATTAAAGCCCTTGCAGTTCCGAGGAGGAGTGCGATGGCGTTGATCTTGTCCTCTTGTATTTTCTCGAATTCGGCATTGGCTGAGCAATCTGTTGGATTATTGGAATACATTGACACATTTGATGGCTATTCGTTCAATTACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATATTCTTTAGGGATCCGTTTGTTCTTGATGAGAATATTTCCGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAAGAGCGTTGAGGATTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAACAGTATTTGACAGAGTTCATGTCTACCAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCAAGAATGGCGGATGATGGCAGGACTTACTACCAAGTTGAGGTAATGTGA

Coding sequence (CDS)

ATGGCTGTAATCCTCGATTCCTTCTTACCTCCAATTCACACACTCAGTTCTTCATCTCGGAAATGGATTCCAACCGCTTCCTCGTCTCCGCGATGGCCGCCGATCGATTCATCCCCCAAATGTCGCTTCTCACTGAGTTCTGAATCTCAACCGGTAATTCTTCCAAAATCACTACACAAACTTTCCGAGGAGGAGTGCAATGGCGTTGATCTTATTAAAGCCCTTGCAGTTCCGAGGAGGAGTGCGATGGCGTTGATCTTGTCCTCTTGTATTTTCTCGAATTCGGCATTGGCTGAGCAATCTGTTGGATTATTGGAATACATTGACACATTTGATGGCTATTCGTTCAATTACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGACATATTCTTTAGGGATCCGTTTGTTCTTGATGAGAATATTTCCGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAAGAGCGTTGAGGATTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAACAGTATTTGACAGAGTTCATGTCTACCAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCAAGAATGGCGGATGATGGCAGGACTTACTACCAAGTTGAGGTAATGTGA
Homology
[Close]
BLAST of CmoCh10G012460 vs. Swiss-Prot
Match: PPD1_ARATH (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.0e-49
Identity = 108/184 (58.70%), Postives = 129/184 (70.11%), Query Frame = 1 

Query: 34  PIDSSPKCRFSLSSESQPVILPKSLHKLSEEECNGVDLIKALAVPRRSAM--ALILSSCI 93
           PI S PK + + S++ +  +    L           D  +  AV RR +M   L++S  I
Sbjct: 44  PISSGPKYQSAKSAKPESPVAINCL----------TDAKQVCAVGRRKSMMMGLLMSGLI 103

Query: 94  FSNSALAEQSVG---LLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEF 153
            S + L           EYIDTFDGYSF YP+NWIQVRGAGADIFFRDP VLDEN+SVEF
Sbjct: 104 VSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEF 163

Query: 154 SSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYY 213
           SSPSSS Y S+EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR+ADDG+ YY
Sbjct: 164 SSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYY 217

[Close]
BLAST of CmoCh10G012460 vs. TrEMBL
Match: B9RFL8_RICCO (Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1435730 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-63
Identity = 142/217 (65.44%), Postives = 160/217 (73.73%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPVILPKSLHK 60
           MA ILDSFLPP+H L+S +R    ++  S   P    S +C  S+S ++QP         
Sbjct: 1   MATILDSFLPPVH-LTSPTRPAFLSSWFSCSLPISADSTRCT-SISCKNQPT-------- 60

Query: 61  LSEEECNGVDLIKALAVPRRSAMALILSSCI-----FSNSALAEQSVGLLEYIDTFDGYS 120
                       KA AVPRRS MALI SSCI     F +SALA+ SVG  EYIDTFDGYS
Sbjct: 61  ------------KAFAVPRRSTMALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYS 120

Query: 121 FNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQ 180
           F YPKNWIQVRGAGADIFFRDP+VLDEN+SVE SSPSSS+Y SVEDLGPP+EAGKKVLKQ
Sbjct: 121 FKYPKNWIQVRGAGADIFFRDPYVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQ 180

Query: 181 YLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEV 213
           YLTEFMSTRLGVRRES+ILSTSSR+ADDG+ YYQVEV
Sbjct: 181 YLTEFMSTRLGVRRESDILSTSSRVADDGKLYYQVEV 195

[Close]
BLAST of CmoCh10G012460 vs. TrEMBL
Match: A0A0A0LTD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.5e-62
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 1 

Query: 83  MALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDE 142
           MAL+LS+CIFSNSALA  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 143 NISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 202
           N+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 203 DGRTYYQVEV 213
           DGRTYYQVEV
Sbjct: 121 DGRTYYQVEV 130

[Close]
BLAST of CmoCh10G012460 vs. TrEMBL
Match: A0A061F332_THECC (Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao GN=TCM_026794 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.5e-61
Identity = 139/217 (64.06%), Postives = 155/217 (71.43%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPVILPKSLHK 60
           MA ILDS LPP       SR  +PT  S+P      SS  C  +  ++            
Sbjct: 30  MATILDSLLPP-------SRPTLPTRLSTP----FPSSSSCISTRKTQKT---------- 89

Query: 61  LSEEECNGVDLIKALAVPRRSAMALILSSCIFS-----NSALAEQSVGLLEYIDTFDGYS 120
                       KA A+PRR+AMALILSSCIFS     + A A+ SVGL EYIDTFDGYS
Sbjct: 90  ------------KAFALPRRNAMALILSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYS 149

Query: 121 FNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQ 180
           F YP+NWIQVRGAGADIFFRDP+VLDEN+SVE SSPSSSRYK+VEDLGPP+EAGKKVLKQ
Sbjct: 150 FKYPQNWIQVRGAGADIFFRDPYVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQ 209

Query: 181 YLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEV 213
           YLTEFMSTRLGVRRESNILSTSSR+ADDG+ YYQVEV
Sbjct: 210 YLTEFMSTRLGVRRESNILSTSSRVADDGKLYYQVEV 213

[Close]
BLAST of CmoCh10G012460 vs. TrEMBL
Match: U5GD37_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s01430g PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.2e-61
Identity = 144/221 (65.16%), Postives = 156/221 (70.59%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWP----PIDSSPKCRFSLSSESQPVILPK 60
           MA ILDSF PP+           PT S S  WP    PI  +P    S+S  +Q      
Sbjct: 1   MARILDSFPPPLQLTH-------PTLSRST-WPRCSMPISPNPTFCSSISHYNQ------ 60

Query: 61  SLHKLSEEECNGVDLIKALAVPRRSAMALILSSCIFS-----NSALAEQSVGLLEYIDTF 120
                         L KA AVPRR+AMALILSS +FS     N A A+QSVG  EYID F
Sbjct: 61  --------------LTKAFAVPRRNAMALILSSYMFSEFGFDNLAFAQQSVGFREYIDQF 120

Query: 121 DGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKK 180
           DGYSF YP+NWIQVRGAGADIFFRDPFVLDEN+SVE SSPSSSRYKSVEDLGPP+EAGKK
Sbjct: 121 DGYSFKYPQNWIQVRGAGADIFFRDPFVLDENLSVELSSPSSSRYKSVEDLGPPQEAGKK 180

Query: 181 VLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEV 213
           VLKQYLTEFMSTRLGVRRESNILSTSSR+ADDG+ YYQVEV
Sbjct: 181 VLKQYLTEFMSTRLGVRRESNILSTSSRVADDGKLYYQVEV 193

[Close]
BLAST of CmoCh10G012460 vs. TrEMBL
Match: A0A059AXB8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01287 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.0e-59
Identity = 120/145 (82.76%), Postives = 129/145 (88.97%), Query Frame = 1 

Query: 73  KALAVPRRSAMALILSSCIF-----SNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRG 132
           KA AVPRRS MALILSSCIF      N ALA+ SV   EYIDTFDGYSF YP+NW+QVRG
Sbjct: 113 KAFAVPRRSVMALILSSCIFLRVGLGNIALAQPSVAFREYIDTFDGYSFKYPQNWVQVRG 172

Query: 133 AGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGV 192
           AGADIFFRDP+VLDEN+SVEFSSPSSS YKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGV
Sbjct: 173 AGADIFFRDPYVLDENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGV 232

Query: 193 RRESNILSTSSRMADDGRTYYQVEV 213
           RRESN++STSSR+ADDG+ YYQVEV
Sbjct: 233 RRESNVVSTSSRIADDGKMYYQVEV 257

[Close]
BLAST of CmoCh10G012460 vs. TAIR10
Match: AT4G15510.1 (AT4G15510.1 Photosystem II reaction center PsbP family protein)

HSP 1 Score: 194.9 bits (494), Expect = 5.1e-50
Identity = 108/184 (58.70%), Postives = 129/184 (70.11%), Query Frame = 1 

Query: 34  PIDSSPKCRFSLSSESQPVILPKSLHKLSEEECNGVDLIKALAVPRRSAM--ALILSSCI 93
           PI S PK + + S++ +  +    L           D  +  AV RR +M   L++S  I
Sbjct: 44  PISSGPKYQSAKSAKPESPVAINCL----------TDAKQVCAVGRRKSMMMGLLMSGLI 103

Query: 94  FSNSALAEQSVG---LLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEF 153
            S + L           EYIDTFDGYSF YP+NWIQVRGAGADIFFRDP VLDEN+SVEF
Sbjct: 104 VSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEF 163

Query: 154 SSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYY 213
           SSPSSS Y S+EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR+ADDG+ YY
Sbjct: 164 SSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYY 217

[Close]
BLAST of CmoCh10G012460 vs. NCBI nr
Match: gi|449443516|ref|XP_004139523.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 8.6e-76
Identity = 163/212 (76.89%), Postives = 173/212 (81.60%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPVILPKSLHK 60
           MAVILDSFLP I TLSSS R+ IP+ SS+ RWP ++S PKC     SESQ          
Sbjct: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSST-RWP-MNSFPKC----CSESQS--------- 60

Query: 61  LSEEECNGVDLIKALAVPRRSAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPK 120
                      IK +AVPRRSAMAL+LS+CIFSNSALA  SVGLLEYIDTFDGYSF YPK
Sbjct: 61  -----------IKGVAVPRRSAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPK 120

Query: 121 NWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEF 180
           NWIQVRGAGADIFFRDPFVLDEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEF
Sbjct: 121 NWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEF 180

Query: 181 MSTRLGVRRESNILSTSSRMADDGRTYYQVEV 213
           MSTRLGVRRESNILSTSSRMADDGRTYYQVEV
Sbjct: 181 MSTRLGVRRESNILSTSSRMADDGRTYYQVEV 186

[Close]
BLAST of CmoCh10G012460 vs. NCBI nr
Match: gi|659128677|ref|XP_008464319.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 280.4 bits (716), Expect = 2.6e-72
Identity = 155/212 (73.11%), Postives = 165/212 (77.83%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPVILPKSLHK 60
           MAVIL SFLP I TL+S  R+ IP+ SS+    PI S PKC                   
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRS--PIISFPKC------------------- 60

Query: 61  LSEEECNGVDLIKALAVPRRSAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPK 120
                C+    IK +AVPRR+AMALILS+CIFSNSA A  SVGLLEYIDTFDGYSF YPK
Sbjct: 61  -----CSQSQSIKDVAVPRRNAMALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPK 120

Query: 121 NWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEF 180
           NWIQVRGAGADIFFRDPFVLDEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEF
Sbjct: 121 NWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEF 180

Query: 181 MSTRLGVRRESNILSTSSRMADDGRTYYQVEV 213
           MSTRLGVRRESNILSTSSRMADDGRTYYQVEV
Sbjct: 181 MSTRLGVRRESNILSTSSRMADDGRTYYQVEV 186

[Close]
BLAST of CmoCh10G012460 vs. NCBI nr
Match: gi|255542948|ref|XP_002512537.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus communis])

HSP 1 Score: 250.0 bits (637), Expect = 3.8e-63
Identity = 142/217 (65.44%), Postives = 160/217 (73.73%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPVILPKSLHK 60
           MA ILDSFLPP+H L+S +R    ++  S   P    S +C  S+S ++QP         
Sbjct: 1   MATILDSFLPPVH-LTSPTRPAFLSSWFSCSLPISADSTRCT-SISCKNQPT-------- 60

Query: 61  LSEEECNGVDLIKALAVPRRSAMALILSSCI-----FSNSALAEQSVGLLEYIDTFDGYS 120
                       KA AVPRRS MALI SSCI     F +SALA+ SVG  EYIDTFDGYS
Sbjct: 61  ------------KAFAVPRRSTMALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYS 120

Query: 121 FNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQ 180
           F YPKNWIQVRGAGADIFFRDP+VLDEN+SVE SSPSSS+Y SVEDLGPP+EAGKKVLKQ
Sbjct: 121 FKYPKNWIQVRGAGADIFFRDPYVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQ 180

Query: 181 YLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEV 213
           YLTEFMSTRLGVRRES+ILSTSSR+ADDG+ YYQVEV
Sbjct: 181 YLTEFMSTRLGVRRESDILSTSSRVADDGKLYYQVEV 195

[Close]
BLAST of CmoCh10G012460 vs. NCBI nr
Match: gi|778659702|ref|XP_011654885.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 9.3e-62
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 1 

Query: 83  MALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDE 142
           MAL+LS+CIFSNSALA  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 143 NISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 202
           N+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 203 DGRTYYQVEV 213
           DGRTYYQVEV
Sbjct: 121 DGRTYYQVEV 130

[Close]
BLAST of CmoCh10G012460 vs. NCBI nr
Match: gi|590644876|ref|XP_007031203.1| (Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 243.4 bits (620), Expect = 3.5e-61
Identity = 139/217 (64.06%), Postives = 155/217 (71.43%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPVILPKSLHK 60
           MA ILDS LPP       SR  +PT  S+P      SS  C  +  ++            
Sbjct: 30  MATILDSLLPP-------SRPTLPTRLSTP----FPSSSSCISTRKTQKT---------- 89

Query: 61  LSEEECNGVDLIKALAVPRRSAMALILSSCIFS-----NSALAEQSVGLLEYIDTFDGYS 120
                       KA A+PRR+AMALILSSCIFS     + A A+ SVGL EYIDTFDGYS
Sbjct: 90  ------------KAFALPRRNAMALILSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYS 149

Query: 121 FNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQ 180
           F YP+NWIQVRGAGADIFFRDP+VLDEN+SVE SSPSSSRYK+VEDLGPP+EAGKKVLKQ
Sbjct: 150 FKYPQNWIQVRGAGADIFFRDPYVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQ 209

Query: 181 YLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEV 213
           YLTEFMSTRLGVRRESNILSTSSR+ADDG+ YYQVEV
Sbjct: 210 YLTEFMSTRLGVRRESNILSTSSRVADDGKLYYQVEV 213

The following BLAST results are available for this feature:
BLAST of CmoCh10G012460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPD1_ARATH9.0e-4958.70PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 ... [more]
BLAST of CmoCh10G012460 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RFL8_RICCO2.6e-6365.44Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN... [more]
A0A0A0LTD2_CUCSA6.5e-6293.85Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1[more]
A0A061F332_THECC2.5e-6164.06Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao ... [more]
U5GD37_POPTR3.2e-6165.16Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s01430g PE=4 SV=1[more]
A0A059AXB8_EUCGR1.0e-5982.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01287 PE=4 SV=1[more]
BLAST of CmoCh10G012460 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15510.15.1e-5058.70 Photosystem II reaction center PsbP family protein[more]
BLAST of CmoCh10G012460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443516|ref|XP_004139523.1|8.6e-7676.89PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis s... [more]
gi|659128677|ref|XP_008464319.1|2.6e-7273.11PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m... [more]
gi|255542948|ref|XP_002512537.1|3.8e-6365.44PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus c... [more]
gi|778659702|ref|XP_011654885.1|9.3e-6293.85PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis s... [more]
gi|590644876|ref|XP_007031203.1|3.5e-6164.06Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP
IPR016123Mog1/PsbP_a/b/a-sand
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0048564 photosystem I assembly
cellular_component GO:0044434 chloroplast part
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G012460.1CmoCh10G012460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP familyPFAMPF01789PsbPcoord: 89..212
score: 3.1
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3DG3DSA:3.40.1000.10coord: 103..212
score: 3.1
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichunknownSSF55724Mog1p/PsbP-likecoord: 107..212
score: 4.45
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 73..213
score: 6.6
NoneNo IPR availablePANTHERPTHR31407:SF15SUBFAMILY NOT NAMEDcoord: 73..213
score: 6.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh10G012460CmaCh10G011670Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G012460ClCG01G010870Watermelon (Charleston Gray)cmowcgB042
CmoCh10G012460Lsi02G011470Bottle gourd (USVL1VR-Ls)cmolsiB043
CmoCh10G012460Cp4.1LG18g00110Cucurbita pepo (Zucchini)cmocpeB056
CmoCh10G012460Cla97C01G010620Watermelon (97103) v2cmowmbB042
CmoCh10G012460Carg27421Silver-seed gourdcarcmoB1011
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G012460Cucumber (Gy14) v2cgybcmoB009
CmoCh10G012460Cucumber (Gy14) v2cgybcmoB019
CmoCh10G012460Melon (DHL92) v3.6.1cmomedB063
CmoCh10G012460Cucumber (Chinese Long) v3cmocucB0048
CmoCh10G012460Cucumber (Chinese Long) v3cmocucB0069
CmoCh10G012460Watermelon (97103) v2cmowmbB047
CmoCh10G012460Wax gourdcmowgoB0073
CmoCh10G012460Cucurbita moschata (Rifu)cmocmoB048
CmoCh10G012460Cucumber (Gy14) v1cgycmoB0048
CmoCh10G012460Cucumber (Gy14) v1cgycmoB0170
CmoCh10G012460Wild cucumber (PI 183967)cmocpiB045
CmoCh10G012460Cucumber (Chinese Long) v2cmocuB042
CmoCh10G012460Cucumber (Chinese Long) v2cmocuB063
CmoCh10G012460Melon (DHL92) v3.5.1cmomeB060
CmoCh10G012460Watermelon (Charleston Gray)cmowcgB044
CmoCh10G012460Watermelon (Charleston Gray)cmowcgB046
CmoCh10G012460Watermelon (97103) v1cmowmB038
CmoCh10G012460Watermelon (97103) v1cmowmB052
CmoCh10G012460Cucurbita pepo (Zucchini)cmocpeB073
CmoCh10G012460Bottle gourd (USVL1VR-Ls)cmolsiB034
CmoCh10G012460Bottle gourd (USVL1VR-Ls)cmolsiB062