CmaCh10G011670 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh10G011670
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionChloroplast oxygen-evolving complex/thylakoid lumenal 25.6kDa protein
LocationCma_Chr10 : 8377302 .. 8380178 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTAATCCTCGATTCCTTCTTACCTCCAATTCACACACTCAGTTCTTCTTCTCGGAAATGGATTCCAACCGCTTCCCCGTCTCCGCGATGGCCGCCAATCGATTCATCCCCCAAATCTCGCTTCTCACTCACCTCTGAATCTAAACCGGTAATTCTTCCAAAATTACTACACAAACTGTAATCTGGAACTTGTTGCTTGCATTTATCGGCATCGCTTTCTAATATGTAACCAGATTAAAGCCCTTGCAGTTCCGAGGAGGAGTGCAATGGCGTTAATCTTGTAATCTGGAACTTGTTTCTTGCATTTATCGCTATCGCTTTCGCTTTATAATTTGTAATCAGATTAAAGCCGTTGCAGTTCAGAGGAGGAGTGCAATGGCGTTGATCTTGTAGTCTGGAACTTGTTTCTTGCATCTATCGCTATCGCTTTCTAATATGTAACCAGATTAAAGCCGTTGCAGTTCCGAGGAGGAGTGCAATGGCGTTGATCTTGTAATCTGGAACTTGTTACTTGCATATATCGCTATCGCTATCGCTTTCTGATATGTAATCAGATTAAAGCCGTTGCAGTTCCGAGGAGGAGTGCAATGGCGTTGATCTTGTAATCTGGAACTTGTTTCTTGCATTTATCGCTATCGCTTTCTAATGTGTAATCAGATTAAAGCCCTTGCAGTTCCGAGGAGGAGTGCGATGGCGTTGATCTTGTCCTCTTGTATTTTCTCGAATTCGGCAATGGCTGAGCAATCTGTTGGATTATTGGAATACATTGACACATTTGATGGCTATTCGTTCAATTACCCTAAGAATTGGATTCAAGTTCGGGGGGCGGGGGCTGACATATTCTTTAGGGATCCGTTTGTTCTTGATGAGAATATTTCCGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAAGAGCGTTGAGGATTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAACAGTATTTGACAGAGTTCATGTCTACAAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCAAGAATGGCGGATGATGGCAGGACTTACTACCAAGTTGAGGTAATGTGAATATTGAGAAGTTTTATATAATTATTGTCCCATCTTTTCCTGCTTGAATTTTATCCATTTTGGAAGGTGGTTTACACAAAATTTTGAAAGTTCACGAACATATTTAAGATCTAATACAAATTCAAATTTGTTTGATAAAACTTGTAGACCCCATCTCAATTGGAGAGGGAAACAAAAACATTTTTTATAAGGGTATAGACACGATCTCCCTAGTAGATGCGTTTTAAAAATTTTGTAGGGAAGCCTGAGGACAACCCAAAGAGGACAATATTTGCTAGCGGTGGACTTGGGCTGTTACAAATAGTATCAGGACACAGCGAGGACACTTAGCCCTGAAGGGGTGGACACTGGGAGATGTGCTAGCAAGGTCGTTGGATCTCGAAGGGGGTGGATTGTGAGATTCCACATTGATTGGAGAGAGGAACGAGTGTCAGCAAGGAGGCTAGGTCTCGAAGGGGGGTGGATTGTGAGATCCCATATCTGTTAGAATCGAAGCATTGTTTTATGAAAACCTCTCTAGCAGACGCGTTTTAAAAACGCATGAAAGAGGACAATATTTGCTAGCAGTGGACTTGGGCTGTTATAAATAGTATCAGGACACAGCGAGGACGCTTAGCCCCGAAGGGGGTGGACACCGGAGGTGCGTCAGCAAGGACGCTGGGTCCCGAAAGGGGGTAGATTGTGAGATCCCACATCGGTTAGAGAGAGGAACGAGGAGGCTAGGCCCCAAAGGGGGGTAGATTGTGAGATCTCACATCGGTTAGAAACAAAACATTCTTTATAAGGTTGTGAAAACCTCTCTCAGGCAGACACGTTTTAAAAACACGTGAAAGGAAAAACCCTAAAATGACAATATTTTCTACCTTTTGAGATTTCATAGTTCATTCTTTGACATTAAATAATGTAGCGTCTCTAAAGTAGTTAGTTTACTATTTTTTTTTTCACGATAGCTTAACTTTTAACAAATGTTAGACTCGAGTTTATGATGTCGTTTAGCTTCTTTGATCTACATTTCTTCAAATGCATCATAACTATCTCCAATAATTGTATTATGTGCATATCAGGTAAACATAAAGTCATATGCAAACAACAATGAACTGGCAGTAATGCCACAGGATCGGGTGGTTCGTCTGGAATGGGACCGAAGATATCTCTCCGTTCTCGGAGTCGAAAACAATCGGCTATATGAACTGAGATTACAAACCCCAGAAAATGTGTTTGTAGAAGAAGAAAATGAGCTGCGTCAAGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGAAATGAAACACAAGAGGAGGCTTGTTTTCAGATACAATAGCTGAAATATTGTACTTTCTGTCATCAAATCACTACTGGATTTTACAGTTTGATATTGGAATCCGCTCTCACTAATTTAACATTGAACCAAAGATTGACACACTATCAATTTCAATGAAACAGGCATCATTTAAGGATTGTGCTCACTTCACACTTGGGTAGTACCGTTATAGCTTAGGACCGAACTTCGAACTTCCCAGCTCGTGTTAGAGCTCGAAAGCCTTTGTAAGGATGATTCGGCAAGTTCTTCACGTCGAGTTTATCTACTTGCAGGCCAGAGAGAACTACACCCATGATCTTAAAACGCACTTGAAATGTTGGAAATATATGAAGCTGTTGTAATCCTGTCTCGAGTGTTAATGTTCCAGACATTGAAGGGGTTTTATCTTTTGGCATCTTTCCAATTGTCCAAGAACACATCTGTAGAAATAAAACGGTATTGAATTTTTAGTATATCATGAG

mRNA sequence

ATGGCTGTAATCCTCGATTCCTTCTTACCTCCAATTCACACACTCAGTTCTTCTTCTCGGAAATGGATTCCAACCGCTTCCCCGTCTCCGCGATGGCCGCCAATCGATTCATCCCCCAAATCTCGCTTCTCACTCACCTCTGAATCTAAACCGATTAAAGCCCTTGCAGTTCCGAGGAGGAGTGCGATGGCGTTGATCTTGTCCTCTTGTATTTTCTCGAATTCGGCAATGGCTGAGCAATCTGTTGGATTATTGGAATACATTGACACATTTGATGGCTATTCGTTCAATTACCCTAAGAATTGGATTCAAGTTCGGGGGGCGGGGGCTGACATATTCTTTAGGGATCCGTTTGTTCTTGATGAGAATATTTCCGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAAGAGCGTTGAGGATTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAACAGTATTTGACAGAGTTCATGTCTACAAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCAAGAATGGCGGATGATGGCAGGACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAACTGGCAGTAATGCCACAGGATCGGGTGGTTCGTCTGGAATGGGACCGAAGATATCTCTCCGTTCTCGGAGTCGAAAACAATCGGCTATATGAACTGAGATTACAAACCCCAGAAAATGTGTTTGTAGAAGAAGAAAATGAGCTGCGTCAAGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGAAATGAAACACAAGAGGAGGCTTGTTTTCAGATACAATAGCTGAAATATTGTACTTTCTGTCATCAAATCACTACTGGATTTTACAGTTTGATATTGGAATCCGCTCTCACTAATTTAACATTGAACCAAAGATTGACACACTATCAATTTCAATGAAACAGGCATCATTTAAGGATTGTGCTCACTTCACACTTGGGTAGTACCGTTATAGCTTAGGACCGAACTTCGAACTTCCCAGCTCGTGTTAGAGCTCGAAAGCCTTTGTAAGGATGATTCGGCAAGTTCTTCACGTCGAGTTTATCTACTTGCAGGCCAGAGAGAACTACACCCATGATCTTAAAACGCACTTGAAATGTTGGAAATATATGAAGCTGTTGTAATCCTGTCTCGAGTGTTAATGTTCCAGACATTGAAGGGGTTTTATCTTTTGGCATCTTTCCAATTGTCCAAGAACACATCTGTAGAAATAAAACGGTATTGAATTTTTAGTATATCATGAG

Coding sequence (CDS)

ATGGCTGTAATCCTCGATTCCTTCTTACCTCCAATTCACACACTCAGTTCTTCTTCTCGGAAATGGATTCCAACCGCTTCCCCGTCTCCGCGATGGCCGCCAATCGATTCATCCCCCAAATCTCGCTTCTCACTCACCTCTGAATCTAAACCGATTAAAGCCCTTGCAGTTCCGAGGAGGAGTGCGATGGCGTTGATCTTGTCCTCTTGTATTTTCTCGAATTCGGCAATGGCTGAGCAATCTGTTGGATTATTGGAATACATTGACACATTTGATGGCTATTCGTTCAATTACCCTAAGAATTGGATTCAAGTTCGGGGGGCGGGGGCTGACATATTCTTTAGGGATCCGTTTGTTCTTGATGAGAATATTTCCGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAAGAGCGTTGAGGATTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAACAGTATTTGACAGAGTTCATGTCTACAAGGCTTGGGGTTAGAAGGGAATCCAACATTCTTTCTACTTCTTCAAGAATGGCGGATGATGGCAGGACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAACTGGCAGTAATGCCACAGGATCGGGTGGTTCGTCTGGAATGGGACCGAAGATATCTCTCCGTTCTCGGAGTCGAAAACAATCGGCTATATGAACTGAGATTACAAACCCCAGAAAATGTGTTTGTAGAAGAAGAAAATGAGCTGCGTCAAGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGA

Protein sequence

MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRRSAMALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENELRQVMDSFRVNKVNA
Homology
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BLAST of CmaCh10G011670 vs. Swiss-Prot
Match: PPD1_ARATH (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 5.8e-82
Identity = 164/243 (67.49%), Postives = 194/243 (79.84%), Query Frame = 1 

Query: 27  SPSPRWPPIDSS-PKSRFSLTSESKPIKALAVPRRSAM--ALILSSCIFSNS----AMAE 86
           S  P++    S+ P+S  ++   +   +  AV RR +M   L++S  I S +    A A 
Sbjct: 46  SSGPKYQSAKSAKPESPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFAS 105

Query: 87  QSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSV 146
             V   EYIDTFDGYSF YP+NWIQVRGAGADIFFRDP VLDEN+SVEFSSPSSS Y S+
Sbjct: 106 TPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSL 165

Query: 147 EDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYAN 206
           EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYAN
Sbjct: 166 EDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYAN 225

Query: 207 NNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENELRQVMDSFRV 263
           NNELAVMPQDRV RLEW+RRYL+VLGVEN+RLY +RLQTPE VF+EEE +LR+VMDSFRV
Sbjct: 226 NNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 285

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BLAST of CmaCh10G011670 vs. TrEMBL
Match: B9RFL8_RICCO (Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1435730 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 3.2e-103
Identity = 201/267 (75.28%), Postives = 226/267 (84.64%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60
           MA ILDSFLPP+H  S +   ++ +        PI +      S++ +++P KA AVPRR
Sbjct: 1   MATILDSFLPPVHLTSPTRPAFLSSWFSCSL--PISADSTRCTSISCKNQPTKAFAVPRR 60

Query: 61  SAMALILSSCI-----FSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFR 120
           S MALI SSCI     F +SA+A+ SVG  EYIDTFDGYSF YPKNWIQVRGAGADIFFR
Sbjct: 61  STMALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFR 120

Query: 121 DPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILS 180
           DP+VLDEN+SVE SSPSSS+Y SVEDLGPP+EAGKKVLKQYLTEFMSTRLGVRRES+ILS
Sbjct: 121 DPYVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILS 180

Query: 181 TSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELR 240
           TSSR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDRVVRLEW+RRYLSVLGVENNRLYELR
Sbjct: 181 TSSRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELR 240

Query: 241 LQTPENVFVEEENELRQVMDSFRVNKV 263
           LQTPENVFVEEEN+LRQVM+SFRVNKV
Sbjct: 241 LQTPENVFVEEENDLRQVMESFRVNKV 265

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BLAST of CmaCh10G011670 vs. TrEMBL
Match: A0A0A0LTD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 2.1e-102
Identity = 191/202 (94.55%), Postives = 198/202 (98.02%), Query Frame = 1 

Query: 63  MALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDE 122
           MAL+LS+CIFSNSA+A  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 123 NISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 182
           N+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 183 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENV 242
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 243 FVEEENELRQVMDSFRVNKVNA 265
           FVEEEN+LRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

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BLAST of CmaCh10G011670 vs. TrEMBL
Match: A0A061F332_THECC (Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao GN=TCM_026794 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 5.1e-101
Identity = 206/269 (76.58%), Postives = 225/269 (83.64%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60
           MA ILDS LPP       SR  +PT   +P   P  SS  S    T +++  KA A+PRR
Sbjct: 30  MATILDSLLPP-------SRPTLPTRLSTPF--PSSSSCIS----TRKTQKTKAFALPRR 89

Query: 61  SAMALILSSCIFS-----NSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFR 120
           +AMALILSSCIFS     + A A+ SVGL EYIDTFDGYSF YP+NWIQVRGAGADIFFR
Sbjct: 90  NAMALILSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFR 149

Query: 121 DPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILS 180
           DP+VLDEN+SVE SSPSSSRYK+VEDLGPP+EAGKKVLKQYLTEFMSTRLGVRRESNILS
Sbjct: 150 DPYVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILS 209

Query: 181 TSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELR 240
           TSSR+ADDG+ YYQVEVNIKSYAN NELAVMPQDRV RLEW+RRYLSVLGVENNRLYELR
Sbjct: 210 TSSRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELR 269

Query: 241 LQTPENVFVEEENELRQVMDSFRVNKVNA 265
           LQTPENVFVEEEN+LRQVMDSFRVNKV +
Sbjct: 270 LQTPENVFVEEENDLRQVMDSFRVNKVTS 285

[Close]
BLAST of CmaCh10G011670 vs. TrEMBL
Match: U5GD37_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s01430g PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 6.7e-101
Identity = 205/271 (75.65%), Postives = 225/271 (83.03%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWP----PIDSSPKSRFSLTSESKPIKALA 60
           MA ILDSF PP+           PT S S  WP    PI  +P    S++  ++  KA A
Sbjct: 1   MARILDSFPPPLQLTH-------PTLSRST-WPRCSMPISPNPTFCSSISHYNQLTKAFA 60

Query: 61  VPRRSAMALILSSCIFS-----NSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGAD 120
           VPRR+AMALILSS +FS     N A A+QSVG  EYID FDGYSF YP+NWIQVRGAGAD
Sbjct: 61  VPRRNAMALILSSYMFSEFGFDNLAFAQQSVGFREYIDQFDGYSFKYPQNWIQVRGAGAD 120

Query: 121 IFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRES 180
           IFFRDPFVLDEN+SVE SSPSSSRYKSVEDLGPP+EAGKKVLKQYLTEFMSTRLGVRRES
Sbjct: 121 IFFRDPFVLDENLSVELSSPSSSRYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRES 180

Query: 181 NILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRL 240
           NILSTSSR+ADDG+ YYQVEVNIKSYANNNELAVMP++RVVRLEWDRRYLSVLGVENN+L
Sbjct: 181 NILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPRERVVRLEWDRRYLSVLGVENNQL 240

Query: 241 YELRLQTPENVFVEEENELRQVMDSFRVNKV 263
           YELRLQTPENVFVEEEN+LR+VMDSFRVNK+
Sbjct: 241 YELRLQTPENVFVEEENDLRKVMDSFRVNKI 263

[Close]
BLAST of CmaCh10G011670 vs. TrEMBL
Match: A9PDI9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00790g PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.1e-98
Identity = 203/270 (75.19%), Postives = 221/270 (81.85%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTL--SSSSRKWIPTASP-SPRWPPIDSSPKSRFSLTSESKPIKALAV 60
           MA ILDSF PP      + S   W+  + P SP      S P ++  LT      KA AV
Sbjct: 1   MARILDSFPPPTQLTHPTRSRPTWLSCSMPISPNSTCFSSIPHNK-QLT------KAFAV 60

Query: 61  PRRSAMALILSSCIFS-----NSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADI 120
           PRR+AMALILSS IFS     N A A++SVG  EYID FDGYS  +P+NWIQVRGAGADI
Sbjct: 61  PRRNAMALILSSYIFSEVGFNNIAFAQRSVGFREYIDQFDGYSLKHPQNWIQVRGAGADI 120

Query: 121 FFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN 180
           FFRDPFVLDEN+SVE SSPSSS YKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN
Sbjct: 121 FFRDPFVLDENLSVELSSPSSSNYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN 180

Query: 181 ILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLY 240
           I+STSSR+ADDG+ YYQVEVNIKSYANNNELAVMPQ+RVVRLEW+RRY+SVLGVENNRLY
Sbjct: 181 IISTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQERVVRLEWNRRYMSVLGVENNRLY 240

Query: 241 ELRLQTPENVFVEEENELRQVMDSFRVNKV 263
           ELRLQTPENVFVEEEN+LRQVMDSFRVNKV
Sbjct: 241 ELRLQTPENVFVEEENDLRQVMDSFRVNKV 263

[Close]
BLAST of CmaCh10G011670 vs. TAIR10
Match: AT4G15510.1 (AT4G15510.1 Photosystem II reaction center PsbP family protein)

HSP 1 Score: 305.4 bits (781), Expect = 3.3e-83
Identity = 164/243 (67.49%), Postives = 194/243 (79.84%), Query Frame = 1 

Query: 27  SPSPRWPPIDSS-PKSRFSLTSESKPIKALAVPRRSAM--ALILSSCIFSNS----AMAE 86
           S  P++    S+ P+S  ++   +   +  AV RR +M   L++S  I S +    A A 
Sbjct: 46  SSGPKYQSAKSAKPESPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFAS 105

Query: 87  QSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDENISVEFSSPSSSRYKSV 146
             V   EYIDTFDGYSF YP+NWIQVRGAGADIFFRDP VLDEN+SVEFSSPSSS Y S+
Sbjct: 106 TPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSL 165

Query: 147 EDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYAN 206
           EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYAN
Sbjct: 166 EDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYAN 225

Query: 207 NNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENELRQVMDSFRV 263
           NNELAVMPQDRV RLEW+RRYL+VLGVEN+RLY +RLQTPE VF+EEE +LR+VMDSFRV
Sbjct: 226 NNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 285

[Close]
BLAST of CmaCh10G011670 vs. NCBI nr
Match: gi|449443516|ref|XP_004139523.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 432.2 bits (1110), Expect = 6.6e-118
Identity = 230/264 (87.12%), Postives = 243/264 (92.05%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60
           MAVILDSFLP I TLSSS R+ IP+ S S RWP ++S PK      SES+ IK +AVPRR
Sbjct: 1   MAVILDSFLPSIQTLSSSFRQRIPSTS-STRWP-MNSFPKC----CSESQSIKGVAVPRR 60

Query: 61  SAMALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120
           SAMAL+LS+CIFSNSA+A  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 265
           NVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENDLRQVMDSFRVNKVNA 258

[Close]
BLAST of CmaCh10G011670 vs. NCBI nr
Match: gi|659128677|ref|XP_008464319.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 419.1 bits (1076), Expect = 5.8e-114
Identity = 225/264 (85.23%), Postives = 237/264 (89.77%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60
           MAVIL SFLP I TL+S  R+ IP+ S +    PI S PK      S+S+ IK +AVPRR
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRS--PIISFPKC----CSQSQSIKDVAVPRR 60

Query: 61  SAMALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120
           +AMALILS+CIFSNSA A  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  NAMALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 265
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 258

[Close]
BLAST of CmaCh10G011670 vs. NCBI nr
Match: gi|255542948|ref|XP_002512537.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus communis])

HSP 1 Score: 382.9 bits (982), Expect = 4.6e-103
Identity = 201/267 (75.28%), Postives = 226/267 (84.64%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60
           MA ILDSFLPP+H  S +   ++ +        PI +      S++ +++P KA AVPRR
Sbjct: 1   MATILDSFLPPVHLTSPTRPAFLSSWFSCSL--PISADSTRCTSISCKNQPTKAFAVPRR 60

Query: 61  SAMALILSSCI-----FSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFR 120
           S MALI SSCI     F +SA+A+ SVG  EYIDTFDGYSF YPKNWIQVRGAGADIFFR
Sbjct: 61  STMALIFSSCILSEVGFHSSALAQSSVGFREYIDTFDGYSFKYPKNWIQVRGAGADIFFR 120

Query: 121 DPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILS 180
           DP+VLDEN+SVE SSPSSS+Y SVEDLGPP+EAGKKVLKQYLTEFMSTRLGVRRES+ILS
Sbjct: 121 DPYVLDENLSVEMSSPSSSKYTSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESDILS 180

Query: 181 TSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELR 240
           TSSR+ADDG+ YYQVEVNIKSYANNNE+AVMPQDRVVRLEW+RRYLSVLGVENNRLYELR
Sbjct: 181 TSSRVADDGKLYYQVEVNIKSYANNNEMAVMPQDRVVRLEWNRRYLSVLGVENNRLYELR 240

Query: 241 LQTPENVFVEEENELRQVMDSFRVNKV 263
           LQTPENVFVEEEN+LRQVM+SFRVNKV
Sbjct: 241 LQTPENVFVEEENDLRQVMESFRVNKV 265

[Close]
BLAST of CmaCh10G011670 vs. NCBI nr
Match: gi|778659702|ref|XP_011654885.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 380.2 bits (975), Expect = 3.0e-102
Identity = 191/202 (94.55%), Postives = 198/202 (98.02%), Query Frame = 1 

Query: 63  MALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVLDE 122
           MAL+LS+CIFSNSA+A  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVLDE
Sbjct: 1   MALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 60

Query: 123 NISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 182
           N+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 61  NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 120

Query: 183 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENV 242
           DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPENV
Sbjct: 121 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 180

Query: 243 FVEEENELRQVMDSFRVNKVNA 265
           FVEEEN+LRQVMDSFRVNKVNA
Sbjct: 181 FVEEENDLRQVMDSFRVNKVNA 202

[Close]
BLAST of CmaCh10G011670 vs. NCBI nr
Match: gi|743890154|ref|XP_011038959.1| (PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Populus euphratica])

HSP 1 Score: 375.9 bits (964), Expect = 5.6e-101
Identity = 207/271 (76.38%), Postives = 224/271 (82.66%), Query Frame = 1 

Query: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWP----PIDSSPKSRFSLTSESKPIKALA 60
           MA ILDSF PP+           PT S S  WP    PI  +P    S++  ++  KA A
Sbjct: 1   MARILDSFPPPLQLTH-------PTLSRST-WPSCSMPISPNPTFCSSISHYNQLTKAFA 60

Query: 61  VPRRSAMALILSSCIFS-----NSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGAD 120
           VPRR+AMALILSS IFS     N A A+QSVG  EYID FDGYSF YP+NWIQVRGAGAD
Sbjct: 61  VPRRNAMALILSSYIFSEVGFNNIAFAQQSVGFREYIDQFDGYSFKYPQNWIQVRGAGAD 120

Query: 121 IFFRDPFVLDENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRES 180
           IFFRDPFVLDEN+SVE SSPSSSRYKSVEDLGPP+EA KKVLKQYLTEFMSTRLGVRRES
Sbjct: 121 IFFRDPFVLDENLSVELSSPSSSRYKSVEDLGPPQEAAKKVLKQYLTEFMSTRLGVRRES 180

Query: 181 NILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRL 240
           NILSTSSR+ADDG+ YYQVEVNIKSYANNNELAVMPQ+RVVRLEWDRRYLSVLGVENN+L
Sbjct: 181 NILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQERVVRLEWDRRYLSVLGVENNQL 240

Query: 241 YELRLQTPENVFVEEENELRQVMDSFRVNKV 263
           YELRLQTPENVFVEEEN+LR+VMDSFRVNKV
Sbjct: 241 YELRLQTPENVFVEEENDLRKVMDSFRVNKV 263

The following BLAST results are available for this feature:
BLAST of CmaCh10G011670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPD1_ARATH5.8e-8267.49PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 ... [more]
BLAST of CmaCh10G011670 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RFL8_RICCO3.2e-10375.28Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN... [more]
A0A0A0LTD2_CUCSA2.1e-10294.55Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181310 PE=4 SV=1[more]
A0A061F332_THECC5.1e-10176.58Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao ... [more]
U5GD37_POPTR6.7e-10175.65Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s01430g PE=4 SV=1[more]
A9PDI9_POPTR4.1e-9875.19Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00790g PE=2 SV=1[more]
BLAST of CmaCh10G011670 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15510.13.3e-8367.49 Photosystem II reaction center PsbP family protein[more]
BLAST of CmaCh10G011670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443516|ref|XP_004139523.1|6.6e-11887.12PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis s... [more]
gi|659128677|ref|XP_008464319.1|5.8e-11485.23PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m... [more]
gi|255542948|ref|XP_002512537.1|4.6e-10375.28PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Ricinus c... [more]
gi|778659702|ref|XP_011654885.1|3.0e-10294.55PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X2 [Cucumis s... [more]
gi|743890154|ref|XP_011038959.1|5.6e-10176.38PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Populus euphrat... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP
IPR016123Mog1/PsbP_a/b/a-sand
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048564 photosystem I assembly
biological_process GO:0015979 photosynthesis
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G011670.1CmaCh10G011670.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP familyPFAMPF01789PsbPcoord: 68..259
score: 6.5
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3DG3DSA:3.40.1000.10coord: 83..259
score: 8.9
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichunknownSSF55724Mog1p/PsbP-likecoord: 87..259
score: 8.37
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 24..264
score: 3.2E
NoneNo IPR availablePANTHERPTHR31407:SF15SUBFAMILY NOT NAMEDcoord: 24..264
score: 3.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh10G011670ClCG01G010870Watermelon (Charleston Gray)cmawcgB051
CmaCh10G011670CmoCh10G012460Cucurbita moschata (Rifu)cmacmoB067
CmaCh10G011670Lsi02G011470Bottle gourd (USVL1VR-Ls)cmalsiB055
CmaCh10G011670Cp4.1LG18g00110Cucurbita pepo (Zucchini)cmacpeB081
CmaCh10G011670Cla97C01G010620Watermelon (97103) v2cmawmbB055
CmaCh10G011670Carg27421Silver-seed gourdcarcmaB1039
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh10G011670Melon (DHL92) v3.6.1cmamedB071
CmaCh10G011670Cucumber (Chinese Long) v3cmacucB0062
CmaCh10G011670Watermelon (97103) v2cmawmbB061
CmaCh10G011670Wax gourdcmawgoB0079
CmaCh10G011670Cucurbita maxima (Rimu)cmacmaB085
CmaCh10G011670Cucumber (Gy14) v1cgycmaB0053
CmaCh10G011670Cucumber (Gy14) v1cgycmaB0176
CmaCh10G011670Cucurbita moschata (Rifu)cmacmoB079
CmaCh10G011670Wild cucumber (PI 183967)cmacpiB054
CmaCh10G011670Cucumber (Chinese Long) v2cmacuB053
CmaCh10G011670Cucumber (Chinese Long) v2cmacuB074
CmaCh10G011670Melon (DHL92) v3.5.1cmameB068
CmaCh10G011670Watermelon (Charleston Gray)cmawcgB053
CmaCh10G011670Watermelon (Charleston Gray)cmawcgB055
CmaCh10G011670Watermelon (97103) v1cmawmB047
CmaCh10G011670Watermelon (97103) v1cmawmB059
CmaCh10G011670Cucurbita pepo (Zucchini)cmacpeB097
CmaCh10G011670Bottle gourd (USVL1VR-Ls)cmalsiB076
CmaCh10G011670Cucumber (Gy14) v2cgybcmaB008
CmaCh10G011670Cucumber (Gy14) v2cgybcmaB016