ClCG01G000300 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G000300
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 238064 .. 238327 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCAAAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAATGGCCACCTGGGTCGGAACCAGCGTCGCCTCCGCTTTCTTCGCCTCTCTTGAGCGATGTTCCTGCATCAATCTCTCCACCTCCGACGACCACGAAGATTCCGAAGAGGCTCATGATCGCCCTCTCATGTACTGTACCTCCACTTCTTCCTCCGTCGTTATTCGCAGCTTCGAACCGCTTCCTCCTCCGGTCAATGATGTCGCCAATCTCCCCGTCTGA

mRNA sequence

ATGGAGAATCAAAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAATGGCCACCTGGGTCGGAACCAGCGTCGCCTCCGCTTTCTTCGCCTCTCTTGAGCGATGTTCCTGCATCAATCTCTCCACCTCCGACGACCACGAAGATTCCGAAGAGGCTCATGATCGCCCTCTCATGTACTGTACCTCCACTTCTTCCTCCGTCGTTATTCGCAGCTTCGAACCGCTTCCTCCTCCGGTCAATGATGTCGCCAATCTCCCCGTCTGA

Coding sequence (CDS)

ATGGAGAATCAAAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAATGGCCACCTGGGTCGGAACCAGCGTCGCCTCCGCTTTCTTCGCCTCTCTTGAGCGATGTTCCTGCATCAATCTCTCCACCTCCGACGACCACGAAGATTCCGAAGAGGCTCATGATCGCCCTCTCATGTACTGTACCTCCACTTCTTCCTCCGTCGTTATTCGCAGCTTCGAACCGCTTCCTCCTCCGGTCAATGATGTCGCCAATCTCCCCGTCTGA

Protein sequence

MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDSEEAHDRPLMYCTSTSSSVVIRSFEPLPPPVNDVANLPV

Homology

[Close]

BLAST of ClCG01G000300 vs. TrEMBL
Match: A0A0A0KLU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139175 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDSEEAHDRPLMYC 60
          MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHED EEAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60

Query: 61 TSTSSSVVIRSFEPLPPPVNDVANLPV 88
          TSTSSS VIRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSS-VIRSFEPLPPPVNDVANLPV 86

[Close]

BLAST of ClCG01G000300 vs. TrEMBL
Match: M5X8A0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013961mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.0e-21
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 2  ENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHE-DSEEAHDRPLMYC 61
          ++QS+CLSYEKLNG+A+W+GT VASAFFASLERCSCINLSTSDDHE + EEAHDRPLM  
Sbjct: 4  QSQSSCLSYEKLNGVASWLGTHVASAFFASLERCSCINLSTSDDHEMNPEEAHDRPLM-- 63

Query: 62 TSTSSSVVIRSFEPLPP------PVNDVANLPV 88
             S SV +    P  P        NDV NLPV
Sbjct: 64 LFASRSVNLSDHRPHYPSSSSSSAPNDVVNLPV 94

[Close]

BLAST of ClCG01G000300 vs. TrEMBL
Match: A0A061G349_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015451 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-20
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 1


Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDSEEAHDRPLMY- 60
          MENQ +CLSY     MA W+GTSVA AFFASLERCSCINLSTSDD +DS EAHDRPLM+ 
Sbjct: 1  MENQGSCLSY-----MAAWLGTSVAQAFFASLERCSCINLSTSDDADDS-EAHDRPLMFT 60

Query: 61 -CTSTSSSVVIRSFEPLPPPVNDVANLPV 88
           C+S  SSV  R+ + LPP  NDV NLPV
Sbjct: 61 NCSSICSSVTSRT-DNLPP--NDVVNLPV 80

[Close]

BLAST of ClCG01G000300 vs. TrEMBL
Match: W9SCE5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011856 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.8e-17
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHE-DSEEAHDRPLMY 60
          MENQ T  + EK+NGMA  +GT VASAFFASLERCSCINLST+DDH+ D++E+HDRPLM 
Sbjct: 1  MENQGTT-TCEKINGMANLLGTYVASAFFASLERCSCINLSTTDDHDADADESHDRPLML 60

Query: 61 CTSTSSSVVIRSFEPLPPPVNDVANLPV 88
           +S S ++   S   +    NDV NLPV
Sbjct: 61 SSSRSLNL---SDHRVSASRNDVVNLPV 84

[Close]

BLAST of ClCG01G000300 vs. TrEMBL
Match: A0A067JIY9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27126 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-16
Identity = 47/69 (68.12%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 1  MEN-QSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDSEEAHDRPLMY 60
          M+N    C SYEKL     WVG SV SAFFASLERC+CINLST+DD ED+EEAHDRPLM+
Sbjct: 1  MDNTMGNCWSYEKLK----WVGMSVVSAFFASLERCACINLSTADDAEDAEEAHDRPLMF 60

Query: 61 CTSTSSSVV 69
          C S S+S V
Sbjct: 61 CNSISNSSV 65

[Close]

BLAST of ClCG01G000300 vs. TAIR10
Match: AT4G10810.1 (AT4G10810.1 unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 3  NQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDSEEAHDRPL 58
          N ST  S EKL+  A+WV T+V SAFFASLERCSC+NLSTSDD ++ EE+H+RPL
Sbjct: 16 NLSTA-SLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEESHNRPL 69

[Close]

BLAST of ClCG01G000300 vs. TAIR10
Match: AT4G24026.1 (AT4G24026.1 unknown protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 3  NQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTS--DDHEDSEEAHDRPL 58
          N ST  S EK++  A+W+  +V SAFF SLERC+C+NLSTS  DD +D +E+H RPL
Sbjct: 10 NVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDDESHHRPL 66

[Close]

BLAST of ClCG01G000300 vs. NCBI nr
Match: gi|659074498|ref|XP_008437637.1| (PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 3.3e-42
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDSEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHED EEAHDRPLMYC
Sbjct: 34  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 93

Query: 61  TSTSSSVVIRSFEPLPPPVNDVANLPV 88
           TSTSSSVVIRSFEPLPPPVNDVANLPV
Sbjct: 94  TSTSSSVVIRSFEPLPPPVNDVANLPV 120

[Close]

BLAST of ClCG01G000300 vs. NCBI nr
Match: gi|778698756|ref|XP_011654597.1| (PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDSEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHED EEAHDRPLMYC
Sbjct: 40  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 99

Query: 61  TSTSSSVVIRSFEPLPPPVNDVANLPV 88
           TSTSSS VIRSFEPLPPPVNDVANLPV
Sbjct: 100 TSTSSS-VIRSFEPLPPPVNDVANLPV 125

[Close]

BLAST of ClCG01G000300 vs. NCBI nr
Match: gi|700194662|gb|KGN49839.1| (hypothetical protein Csa_5G139175 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDSEEAHDRPLMYC 60
          MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHED EEAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60

Query: 61 TSTSSSVVIRSFEPLPPPVNDVANLPV 88
          TSTSSS VIRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSS-VIRSFEPLPPPVNDVANLPV 86

[Close]

BLAST of ClCG01G000300 vs. NCBI nr
Match: gi|778698775|ref|XP_011654601.1| (PREDICTED: uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDSEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHED EEAHDRPLMYC
Sbjct: 39  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 98

Query: 61  TSTSSSVVIRSFEPLPPPVNDVANLPV 88
           TSTSSS VIRSFEPLPPPVNDVANLPV
Sbjct: 99  TSTSSS-VIRSFEPLPPPVNDVANLPV 124

[Close]

BLAST of ClCG01G000300 vs. NCBI nr
Match: gi|657970070|ref|XP_008376768.1| (PREDICTED: uncharacterized protein LOC103439904 [Malus domestica])

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-22
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 1


Query: 2   ENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHE-DSEEAHDRPLM-- 61
           ++QS+CLSYEK+NG+A+W+GT VASAFFASLERCSCINLSTSDDHE + EEAHDRPLM  
Sbjct: 4   QSQSSCLSYEKINGVASWLGTHVASAFFASLERCSCINLSTSDDHETNPEEAHDRPLMLF 63

Query: 62  -------------YCTSTSSSVVIRSFEPLPPPVNDVANLPV 88
                        Y +STSS+    S     PP NDV NLPV
Sbjct: 64  ASRSVNLSDHRPHYVSSTSSASASSS---SAPPPNDVVNLPV 102

The following BLAST results are available for this feature:

BLAST of ClCG01G000300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLU3_CUCSA	1.7e-40	97.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139175 PE=4 SV=1	[more]
M5X8A0_PRUPE	5.0e-21	64.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013961mg PE=4 SV=1	[more]
A0A061G349_THECC	2.5e-20	68.54	Uncharacterized protein OS=Theobroma cacao GN=TCM_015451 PE=4 SV=1	[more]
W9SCE5_9ROSA	9.8e-17	60.23	Uncharacterized protein OS=Morus notabilis GN=L484_011856 PE=4 SV=1	[more]
A0A067JIY9_JATCU	2.9e-16	68.12	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27126 PE=4 SV=1	[more]

BLAST of ClCG01G000300 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10810.1	1.1e-14	67.27	unknown protein	[more]
AT4G24026.1	1.7e-12	56.14	unknown protein	[more]

BLAST of ClCG01G000300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074498\|ref\|XP_008437637.1\|	3.3e-42	98.85	PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo]	[more]
gi\|778698756\|ref\|XP_011654597.1\|	2.4e-40	97.70	PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus]	[more]
gi\|700194662\|gb\|KGN49839.1\|	2.4e-40	97.70	hypothetical protein Csa_5G139175 [Cucumis sativus]	[more]
gi\|778698775\|ref\|XP_011654601.1\|	2.4e-40	97.70	PREDICTED: uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus]	[more]
gi\|657970070\|ref\|XP_008376768.1\|	3.8e-22	60.78	PREDICTED: uncharacterized protein LOC103439904 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G000300.1	ClCG01G000300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34061	FAMILY NOT NAMED	coord: 1..58 score: 6.8
None	No IPR available	PANTHER	PTHR34061:SF2	SUBFAMILY NOT NAMED	coord: 1..58 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G000300	MELO3C005905	Melon (DHL92) v3.5.1	mewcgB015
ClCG01G000300	Cla004883	Watermelon (97103) v1	wcgwmB142
ClCG01G000300	Bhi12G000574	Wax gourd	wcgwgoB199
ClCG01G000300	CSPI05G02950	Wild cucumber (PI 183967)	cpiwcgB392
ClCG01G000300	Cucsa.202320	Cucumber (Gy14) v1	cgywcgB374
ClCG01G000300	CmaCh02G011310	Cucurbita maxima (Rimu)	cmawcgB523
ClCG01G000300	CmoCh02G011600	Cucurbita moschata (Rifu)	cmowcgB520
ClCG01G000300	Lsi09G000120	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G000300	Cp4.1LG05g05970	Cucurbita pepo (Zucchini)	cpewcgB635
ClCG01G000300	MELO3C005905.2	Melon (DHL92) v3.6.1	medwcgB016
ClCG01G000300	Carg26608	Silver-seed gourd	carwcgB0265
ClCG01G000300	Carg14006	Silver-seed gourd	carwcgB0492
ClCG01G000300	CsaV3_5G000270	Cucumber (Chinese Long) v3	cucwcgB397

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G000300	Cucurbita moschata (Rifu)	cmowcgB243
ClCG01G000300	Cucurbita moschata (Rifu)	cmowcgB282
ClCG01G000300	Cucurbita moschata (Rifu)	cmowcgB344
ClCG01G000300	Wild cucumber (PI 183967)	cpiwcgB206
ClCG01G000300	Wild cucumber (PI 183967)	cpiwcgB207
ClCG01G000300	Wild cucumber (PI 183967)	cpiwcgB379
ClCG01G000300	Cucumber (Chinese Long) v2	cuwcgB204
ClCG01G000300	Cucumber (Chinese Long) v2	cuwcgB205
ClCG01G000300	Cucumber (Chinese Long) v2	cuwcgB364
ClCG01G000300	Cucumber (Chinese Long) v2	cuwcgB375
ClCG01G000300	Melon (DHL92) v3.5.1	mewcgB018
ClCG01G000300	Melon (DHL92) v3.5.1	mewcgB420
ClCG01G000300	Melon (DHL92) v3.5.1	mewcgB423
ClCG01G000300	Watermelon (97103) v1	wcgwmB130
ClCG01G000300	Watermelon (97103) v1	wcgwmB136
ClCG01G000300	Cucurbita pepo (Zucchini)	cpewcgB022
ClCG01G000300	Cucurbita pepo (Zucchini)	cpewcgB167
ClCG01G000300	Cucurbita pepo (Zucchini)	cpewcgB199
ClCG01G000300	Bottle gourd (USVL1VR-Ls)	lsiwcgB324
ClCG01G000300	Bottle gourd (USVL1VR-Ls)	lsiwcgB325
ClCG01G000300	Cucumber (Gy14) v2	cgybwcgB189
ClCG01G000300	Cucumber (Gy14) v2	cgybwcgB332
ClCG01G000300	Cucumber (Gy14) v2	cgybwcgB344
ClCG01G000300	Melon (DHL92) v3.6.1	medwcgB014
ClCG01G000300	Melon (DHL92) v3.6.1	medwcgB407
ClCG01G000300	Melon (DHL92) v3.6.1	medwcgB411
ClCG01G000300	Silver-seed gourd	carwcgB0522
ClCG01G000300	Silver-seed gourd	carwcgB0963
ClCG01G000300	Cucumber (Chinese Long) v3	cucwcgB207
ClCG01G000300	Cucumber (Chinese Long) v3	cucwcgB208
ClCG01G000300	Cucumber (Chinese Long) v3	cucwcgB385
ClCG01G000300	Cucumber (Chinese Long) v3	cucwcgB393
ClCG01G000300	Watermelon (97103) v2	wcgwmbB105
ClCG01G000300	Watermelon (97103) v2	wcgwmbB089
ClCG01G000300	Watermelon (97103) v2	wcgwmbB108
ClCG01G000300	Wax gourd	wcgwgoB210
ClCG01G000300	Watermelon (Charleston Gray)	wcgwcgB084
ClCG01G000300	Watermelon (Charleston Gray)	wcgwcgB094
ClCG01G000300	Watermelon (Charleston Gray)	wcgwcgB099
ClCG01G000300	Cucumber (Gy14) v1	cgywcgB002
ClCG01G000300	Cucumber (Gy14) v1	cgywcgB375
ClCG01G000300	Cucumber (Gy14) v1	cgywcgB446
ClCG01G000300	Cucurbita maxima (Rimu)	cmawcgB255
ClCG01G000300	Cucurbita maxima (Rimu)	cmawcgB289
ClCG01G000300	Cucurbita maxima (Rimu)	cmawcgB347