Carg26608 (gene) Silver-seed gourd

Overview
NameCarg26608
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUDP-N-acetylmuramate--L-alanine ligase
LocationCucurbita_argyrosperma_scaffold_261 : 288321 .. 288912 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTAAGTTAATCAAGTATATAGCACTACACAAAACAGACAGAGTAGGCTGTAACGCTGATACAGACAAGACATAGACAAAGCAGCTACGGTATTCAGCTCCGTAATGGCCTTGGATTTTAAGAAGATTAATTTTAGGTATAGATGAAGTTTTGAAATGGTCGTAGTAAACTAAAAATAGGATAATAGAAATTTAAATTAAGAAATTTTGAAAAAAGGGATTTCCCCAAAATTCTCATCCTCTTTCATCCTTCTCCTCTGTCTTCCCTGATTTTTATCTCTGTTTTCACAGAAGATCTAAGGCAGGCAAGAACGAATCCGCCATAGCCATGGAGAATCAGAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAGTGGCGACCTGGGTAGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGAGTTGTTCCTGCATCAATCTCTCTACCTCCGACGACCACGAAGATCCCGACGAGGCTCACGATCGCCCTCTAATGTACTGCACCTCCACTTCTTCCTCCATCATCCGCAGCTTTGAACCGCTTCCCCCGCCGGTCAACGACGTCGCCAATCTTCCTGTCTGA

mRNA sequence

ATGGAAAGATCTAAGGCAGGCAAGAACGAATCCGCCATAGCCATGGAGAATCAGAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAGTGGCGACCTGGGTAGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGAGTTGTTCCTGCATCAATCTCTCTACCTCCGACGACCACGAAGATCCCGACGAGGCTCACGATCGCCCTCTAATGTACTGCACCTCCACTTCTTCCTCCATCATCCGCAGCTTTGAACCGCTTCCCCCGCCGGTCAACGACGTCGCCAATCTTCCTGTCTGA

Coding sequence (CDS)

ATGGAAAGATCTAAGGCAGGCAAGAACGAATCCGCCATAGCCATGGAGAATCAGAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAGTGGCGACCTGGGTAGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGAGTTGTTCCTGCATCAATCTCTCTACCTCCGACGACCACGAAGATCCCGACGAGGCTCACGATCGCCCTCTAATGTACTGCACCTCCACTTCTTCCTCCATCATCCGCAGCTTTGAACCGCTTCCCCCGCCGGTCAACGACGTCGCCAATCTTCCTGTCTGA

Protein sequence

MERSKAGKNESAIAMENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSIIRSFEPLPPPVNDVANLPV
Homology
[Close]
BLAST of Carg26608 vs. NCBI nr
Match: XP_023551548.1 (uncharacterized protein LOC111809337 [Cucurbita pepo subsp. pepo] >XP_023551549.1 uncharacterized protein LOC111809337 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.8 bits (447), Expect = 3.7e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 15  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 74
           MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC
Sbjct: 1   MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 75  TSTSSSIIRSFEPLPPPVNDVANLPV 101
           TSTSSSIIRSFEPLPPPVNDVANLPV
Sbjct: 61  TSTSSSIIRSFEPLPPPVNDVANLPV 86

[Close]
BLAST of Carg26608 vs. NCBI nr
Match: XP_022922222.1 (uncharacterized protein LOC111430272 [Cucurbita moschata] >XP_022922223.1 uncharacterized protein LOC111430272 [Cucurbita moschata])

HSP 1 Score: 176.4 bits (446), Expect = 4.8e-41
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 15  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 74
           MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC
Sbjct: 1   MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 75  TSTSSSIIRSFEPLPPPVNDVANLPV 101
           TSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 61  TSTSSSVIRSFEPLPPPVNDVANLPV 86

[Close]
BLAST of Carg26608 vs. NCBI nr
Match: XP_022972977.1 (uncharacterized protein LOC111471501 [Cucurbita maxima] >XP_022972979.1 uncharacterized protein LOC111471501 [Cucurbita maxima])

HSP 1 Score: 175.6 bits (444), Expect = 8.2e-41
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 15  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 74
           MENQSTCL+YEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC
Sbjct: 1   MENQSTCLTYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 75  TSTSSSIIRSFEPLPPPVNDVANLPV 101
           TSTSSSIIRSFEPLPPPVNDVANLPV
Sbjct: 61  TSTSSSIIRSFEPLPPPVNDVANLPV 86

[Close]
BLAST of Carg26608 vs. NCBI nr
Match: XP_011654597.1 (PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654598.1 PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654599.1 PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654600.1 PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 5.3e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 13  IAMENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLM 72
           I MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLM
Sbjct: 38  IPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLM 97

Query: 73  YCTSTSSSIIRSFEPLPPPVNDVANLPV 101
           YCTSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 98  YCTSTSSSVIRSFEPLPPPVNDVANLPV 125

[Close]
BLAST of Carg26608 vs. NCBI nr
Match: XP_011654601.1 (PREDICTED: uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 5.3e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 13  IAMENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLM 72
           I MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLM
Sbjct: 37  IPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLM 96

Query: 73  YCTSTSSSIIRSFEPLPPPVNDVANLPV 101
           YCTSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 97  YCTSTSSSVIRSFEPLPPPVNDVANLPV 124

[Close]
BLAST of Carg26608 vs. TAIR10
Match: AT4G10810.1 (unknown protein)

HSP 1 Score: 68.2 bits (165), Expect = 3.4e-12
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 25 EKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPL 72
          EKL+  A+WV T+V SAFFASLE CSC+NLSTSDD ++ +E+H+RPL
Sbjct: 23 EKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEESHNRPL 69

[Close]
BLAST of Carg26608 vs. TAIR10
Match: AT4G24026.1 (unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 9  NESAIAMENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLST 57
          ++S     N ST  S EK++  A+W+  +V SAFF SLE C+C+NLST
Sbjct: 2  DKSISITSNVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLST 49

[Close]
BLAST of Carg26608 vs. TrEMBL
Match: tr|A0A0A0KLU3|A0A0A0KLU3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139175 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 7.9e-40
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 15  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 74
           MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYC
Sbjct: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60

Query: 75  TSTSSSIIRSFEPLPPPVNDVANLPV 101
           TSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 61  TSTSSSVIRSFEPLPPPVNDVANLPV 86

[Close]
BLAST of Carg26608 vs. TrEMBL
Match: tr|A0A1S3AU63|A0A1S3AU63_CUCME (uncharacterized protein LOC103482984 OS=Cucumis melo OX=3656 GN=LOC103482984 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.7e-39
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 13  IAMENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLM 72
           I MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLM
Sbjct: 32  IPMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLM 91

Query: 73  YCTSTSSS-IIRSFEPLPPPVNDVANLPV 101
           YCTSTSSS +IRSFEPLPPPVNDVANLPV
Sbjct: 92  YCTSTSSSVVIRSFEPLPPPVNDVANLPV 120

[Close]
BLAST of Carg26608 vs. TrEMBL
Match: tr|M5X8A0|M5X8A0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G314400 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.9e-20
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 16  ENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHE-DPDEAHDRPLMYC 75
           ++QS+CLSYEKLNGVA+W+GT VASAFFASLE CSCINLSTSDDHE +P+EAHDRPLM  
Sbjct: 4   QSQSSCLSYEKLNGVASWLGTHVASAFFASLERCSCINLSTSDDHEMNPEEAHDRPLMLF 63

Query: 76  TSTSSSIIRSFEPLP-----PPVNDVANLPV 101
            S S ++       P        NDV NLPV
Sbjct: 64  ASRSVNLSDHRPHYPSSSSSSAPNDVVNLPV 94

[Close]
BLAST of Carg26608 vs. TrEMBL
Match: tr|A0A061G349|A0A061G349_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_015451 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 56/88 (63.64%), Postives = 64/88 (72.73%), Query Frame = 0 

Query: 15  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMY- 74
           MENQ +CLSY     +A W+GTSVA AFFASLE CSCINLSTSDD +D  EAHDRPLM+ 
Sbjct: 1   MENQGSCLSY-----MAAWLGTSVAQAFFASLERCSCINLSTSDDADD-SEAHDRPLMFT 60

Query: 75  -CTSTSSSIIRSFEPLPPPVNDVANLPV 101
            C+S  SS+    + LPP  NDV NLPV
Sbjct: 61  NCSSICSSVTSRTDNLPP--NDVVNLPV 80

[Close]
BLAST of Carg26608 vs. TrEMBL
Match: tr|A0A1R3JFE2|A0A1R3JFE2_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_16806 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-17
Identity = 58/89 (65.17%), Postives = 65/89 (73.03%), Query Frame = 0 

Query: 15  MENQ-STCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMY 74
           MENQ  +CLSY     +A+W+GTSVA AFFASLE CSCINLSTSDD ED  EAHDRPLM+
Sbjct: 1   MENQGGSCLSY-----MASWLGTSVAQAFFASLERCSCINLSTSDDAED-SEAHDRPLMF 60

Query: 75  --CTSTSSSIIRSFEPLPPPVNDVANLPV 101
             C+S SSS+      LPP  NDV NLPV
Sbjct: 61  TNCSSMSSSVTSRTNTLPP--NDVVNLPV 81

The following BLAST results are available for this feature:
BLAST of Carg26608 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023551548.13.7e-41100.00uncharacterized protein LOC111809337 [Cucurbita pepo subsp. pepo] >XP_023551549.... [more]
XP_022922222.14.8e-4198.84uncharacterized protein LOC111430272 [Cucurbita moschata] >XP_022922223.1 unchar... [more]
XP_022972977.18.2e-4198.84uncharacterized protein LOC111471501 [Cucurbita maxima] >XP_022972979.1 uncharac... [more]
XP_011654597.15.3e-4094.32PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP... [more]
XP_011654601.15.3e-4094.32PREDICTED: uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus][more]
BLAST of Carg26608 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10810.13.4e-1265.96unknown protein[more]
AT4G24026.11.6e-0647.92unknown protein[more]
BLAST of Carg26608 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg26608 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLU3|A0A0A0KLU3_CUCSA7.9e-4095.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139175 PE=4 SV=1[more]
tr|A0A1S3AU63|A0A1S3AU63_CUCME8.7e-3993.26uncharacterized protein LOC103482984 OS=Cucumis melo OX=3656 GN=LOC103482984 PE=... [more]
tr|M5X8A0|M5X8A0_PRUPE6.9e-2063.74Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G314400 PE=4 SV=1[more]
tr|A0A061G349|A0A061G349_THECC1.4e-1763.64Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_015451 PE=4 SV=1[more]
tr|A0A1R3JFE2|A0A1R3JFE2_9ROSI4.2e-1765.17Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_16806 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26608-RACarg26608-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34061FAMILY NOT NAMEDcoord: 8..100
NoneNo IPR availablePANTHERPTHR34061:SF2SUBFAMILY NOT NAMEDcoord: 8..100

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg26608Cla004883Watermelon (97103) v1carwmB0264
Carg26608ClCG01G000300Watermelon (Charleston Gray)carwcgB0265
Carg26608CmoCh02G011600Cucurbita moschata (Rifu)carcmoB0377
Carg26608Lsi09G000120Bottle gourd (USVL1VR-Ls)carlsiB246
Carg26608Bhi12G000574Wax gourdcarwgoB0357
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg26608Carg14006Silver-seed gourdcarcarB313
The following block(s) are covering this gene:
GeneOrganismBlock
Carg26608Watermelon (97103) v2carwmbB0281
Carg26608Cucumber (Gy14) v2carcgybB0288
Carg26608Cucurbita maxima (Rimu)carcmaB0379
Carg26608Cucurbita moschata (Rifu)carcmoB0376
Carg26608Cucurbita pepo (Zucchini)carcpeB0384
Carg26608Wild cucumber (PI 183967)carcpiB0305
Carg26608Cucumber (Chinese Long) v2carcuB0301
Carg26608Cucumber (Chinese Long) v3carcucB0304