CmaCh02G011310 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G011310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_15
Location	Cma_Chr02 : 6696362 .. 6696625 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCAGAGCAGCGCCTGTCTGTCCTACGAGAAGCTTAACGGCGTCGCCACCTGGCTCGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGCGCTGTTCCTGCATCAATCTCTCAACCTCCGACGACCACGAAGATCTCGATGAGGCTCACGATCGCCCTCTCATGTACTGCACATCCACTTCTTCCTCCGTCATTCGCAGCTTCGAACCGCTTCCTCCGCCGGTCAATGACGTTGCCAATCTCCCCGTCTGA

mRNA sequence

ATGGAGAATCAGAGCAGCGCCTGTCTGTCCTACGAGAAGCTTAACGGCGTCGCCACCTGGCTCGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGCGCTGTTCCTGCATCAATCTCTCAACCTCCGACGACCACGAAGATCTCGATGAGGCTCACGATCGCCCTCTCATGTACTGCACATCCACTTCTTCCTCCGTCATTCGCAGCTTCGAACCGCTTCCTCCGCCGGTCAATGACGTTGCCAATCTCCCCGTCTGA

Coding sequence (CDS)

ATGGAGAATCAGAGCAGCGCCTGTCTGTCCTACGAGAAGCTTAACGGCGTCGCCACCTGGCTCGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGCGCTGTTCCTGCATCAATCTCTCAACCTCCGACGACCACGAAGATCTCGATGAGGCTCACGATCGCCCTCTCATGTACTGCACATCCACTTCTTCCTCCGTCATTCGCAGCTTCGAACCGCTTCCTCCGCCGGTCAATGACGTTGCCAATCTCCCCGTCTGA

Protein sequence

MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV

Homology

[Close]

BLAST of CmaCh02G011310 vs. TrEMBL
Match: A0A0A0KLU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139175 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.9e-38
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
          MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHED +EAHDRPLMY
Sbjct: 1  MENQST-CLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMY 60

Query: 61 CTSTSSSVIRSFEPLPPPVNDVANLPV 88
          CTSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 61 CTSTSSSVIRSFEPLPPPVNDVANLPV 86

[Close]

BLAST of CmaCh02G011310 vs. TrEMBL
Match: M5X8A0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013961mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-20
Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 1  MENQS-SACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHE-DLDEAHDRPL 60
          ME+QS S+CLSYEKLNGVA+WLGT VASAFFASLERCSCINLSTSDDHE + +EAHDRPL
Sbjct: 1  MESQSQSSCLSYEKLNGVASWLGTHVASAFFASLERCSCINLSTSDDHEMNPEEAHDRPL 60

Query: 61 MYCTSTSSSVIRSFEPLP-----PPVNDVANLPV 88
          M   S S ++       P        NDV NLPV
Sbjct: 61 MLFASRSVNLSDHRPHYPSSSSSSAPNDVVNLPV 94

[Close]

BLAST of CmaCh02G011310 vs. TrEMBL
Match: A0A061G349_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015451 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-18
Identity = 60/89 (67.42%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
          MENQ S CLSY     +A WLGTSVA AFFASLERCSCINLSTSDD +D  EAHDRPLM+
Sbjct: 1  MENQGS-CLSY-----MAAWLGTSVAQAFFASLERCSCINLSTSDDADD-SEAHDRPLMF 60

Query: 61 --CTSTSSSVIRSFEPLPPPVNDVANLPV 88
            C+S  SSV    + LPP  NDV NLPV
Sbjct: 61 TNCSSICSSVTSRTDNLPP--NDVVNLPV 80

[Close]

BLAST of CmaCh02G011310 vs. TrEMBL
Match: A0A067JIY9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27126 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-16
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
          M+N    C SYEKL     W+G SV SAFFASLERC+CINLST+DD ED +EAHDRPLM+
Sbjct: 1  MDNTMGNCWSYEKLK----WVGMSVVSAFFASLERCACINLSTADDAEDAEEAHDRPLMF 60

Query: 61 CTSTSSSVIRS 72
          C S S+S + S
Sbjct: 61 CNSISNSSVSS 67

[Close]

BLAST of CmaCh02G011310 vs. TrEMBL
Match: W9SCE5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011856 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-16
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHE-DLDEAHDRPLM 60
          MENQ +   + EK+NG+A  LGT VASAFFASLERCSCINLST+DDH+ D DE+HDRPLM
Sbjct: 1  MENQGTT--TCEKINGMANLLGTYVASAFFASLERCSCINLSTTDDHDADADESHDRPLM 60

Query: 61 YCTSTSSSVIRSFEPLPPPVNDVANLPV 88
             S+S S+  S   +    NDV NLPV
Sbjct: 61 --LSSSRSLNLSDHRVSASRNDVVNLPV 84

[Close]

BLAST of CmaCh02G011310 vs. TAIR10
Match: AT4G10810.1 (AT4G10810.1 unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-13
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 10 SYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPL 59
          S EKL+  A+W+ T+V SAFFASLERCSC+NLSTSDD ++ +E+H+RPL
Sbjct: 21 SLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEESHNRPL 69

[Close]

BLAST of CmaCh02G011310 vs. TAIR10
Match: AT4G24026.1 (AT4G24026.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.5e-11
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 6  SACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTS--DDHEDLDEAHDRPL 59
          S   S EK++  A+W+  +V SAFF SLERC+C+NLSTS  DD +D DE+H RPL
Sbjct: 12 STTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDDESHHRPL 66

[Close]

BLAST of CmaCh02G011310 vs. NCBI nr
Match: gi|778698756|ref|XP_011654597.1| (PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.5e-38
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
           MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHED +EAHDRPLMY
Sbjct: 40  MENQST-CLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMY 99

Query: 61  CTSTSSSVIRSFEPLPPPVNDVANLPV 88
           CTSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 100 CTSTSSSVIRSFEPLPPPVNDVANLPV 125

[Close]

BLAST of CmaCh02G011310 vs. NCBI nr
Match: gi|700194662|gb|KGN49839.1| (hypothetical protein Csa_5G139175 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.5e-38
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
          MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHED +EAHDRPLMY
Sbjct: 1  MENQST-CLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMY 60

Query: 61 CTSTSSSVIRSFEPLPPPVNDVANLPV 88
          CTSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 61 CTSTSSSVIRSFEPLPPPVNDVANLPV 86

[Close]

BLAST of CmaCh02G011310 vs. NCBI nr
Match: gi|778698775|ref|XP_011654601.1| (PREDICTED: uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.5e-38
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
           MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHED +EAHDRPLMY
Sbjct: 39  MENQST-CLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMY 98

Query: 61  CTSTSSSVIRSFEPLPPPVNDVANLPV 88
           CTSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 99  CTSTSSSVIRSFEPLPPPVNDVANLPV 124

[Close]

BLAST of CmaCh02G011310 vs. NCBI nr
Match: gi|659074498|ref|XP_008437637.1| (PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1   MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
           MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHED +EAHDRPLMY
Sbjct: 34  MENQST-CLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMY 93

Query: 61  CTSTSSS-VIRSFEPLPPPVNDVANLPV 88
           CTSTSSS VIRSFEPLPPPVNDVANLPV
Sbjct: 94  CTSTSSSVVIRSFEPLPPPVNDVANLPV 120

[Close]

BLAST of CmaCh02G011310 vs. NCBI nr
Match: gi|657970070|ref|XP_008376768.1| (PREDICTED: uncharacterized protein LOC103439904 [Malus domestica])

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-21
Identity = 65/104 (62.50%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 1   MENQS-SACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHE-DLDEAHDRPL 60
           M +QS S+CLSYEK+NGVA+WLGT VASAFFASLERCSCINLSTSDDHE + +EAHDRPL
Sbjct: 1   MGSQSQSSCLSYEKINGVASWLGTHVASAFFASLERCSCINLSTSDDHETNPEEAHDRPL 60

Query: 61  M---------------YCTSTSSSVIRSFEPLPPPVNDVANLPV 88
           M               Y +STSS+   S     PP NDV NLPV
Sbjct: 61  MLFASRSVNLSDHRPHYVSSTSSASASSSS--APPPNDVVNLPV 102

The following BLAST results are available for this feature:

BLAST of CmaCh02G011310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G011310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLU3_CUCSA	5.9e-38	93.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139175 PE=4 SV=1	[more]
M5X8A0_PRUPE	2.5e-20	65.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013961mg PE=4 SV=1	[more]
A0A061G349_THECC	2.3e-18	67.42	Uncharacterized protein OS=Theobroma cacao GN=TCM_015451 PE=4 SV=1	[more]
A0A067JIY9_JATCU	3.7e-16	63.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27126 PE=4 SV=1	[more]
W9SCE5_9ROSA	8.3e-16	61.36	Uncharacterized protein OS=Morus notabilis GN=L484_011856 PE=4 SV=1	[more]

BLAST of CmaCh02G011310 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10810.1	3.4e-13	65.31	unknown protein	[more]
AT4G24026.1	5.5e-11	56.36	unknown protein	[more]

BLAST of CmaCh02G011310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698756\|ref\|XP_011654597.1\|	8.5e-38	93.10	PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus]	[more]
gi\|700194662\|gb\|KGN49839.1\|	8.5e-38	93.10	hypothetical protein Csa_5G139175 [Cucumis sativus]	[more]
gi\|778698775\|ref\|XP_011654601.1\|	8.5e-38	93.10	PREDICTED: uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus]	[more]
gi\|659074498\|ref\|XP_008437637.1\|	2.1e-36	92.05	PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo]	[more]
gi\|657970070\|ref\|XP_008376768.1\|	4.2e-21	62.50	PREDICTED: uncharacterized protein LOC103439904 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G011310.1	CmaCh02G011310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34061	FAMILY NOT NAMED	coord: 3..60 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G011310	Cla004883	Watermelon (97103) v1	cmawmB574
CmaCh02G011310	ClCG01G000300	Watermelon (Charleston Gray)	cmawcgB523
CmaCh02G011310	CSPI05G02950	Wild cucumber (PI 183967)	cmacpiB616
CmaCh02G011310	CmoCh02G011600	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G011310	Lsi09G000120	Bottle gourd (USVL1VR-Ls)	cmalsiB536
CmaCh02G011310	Cp4.1LG05g05970	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G011310	MELO3C005905.2	Melon (DHL92) v3.6.1	cmamedB605
CmaCh02G011310	CsaV3_5G000270	Cucumber (Chinese Long) v3	cmacucB0733
CmaCh02G011310	Bhi12G000574	Wax gourd	cmawgoB0710
CmaCh02G011310	Carg14006	Silver-seed gourd	carcmaB0716

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G011310	Cucurbita pepo (Zucchini)	cmacpeB598
CmaCh02G011310	Cucurbita pepo (Zucchini)	cmacpeB602
CmaCh02G011310	Cucurbita pepo (Zucchini)	cmacpeB608
CmaCh02G011310	Cucurbita pepo (Zucchini)	cmacpeB639
CmaCh02G011310	Bottle gourd (USVL1VR-Ls)	cmalsiB584
CmaCh02G011310	Cucumber (Gy14) v2	cgybcmaB401
CmaCh02G011310	Cucumber (Gy14) v2	cgybcmaB639
CmaCh02G011310	Cucumber (Gy14) v2	cgybcmaB644
CmaCh02G011310	Melon (DHL92) v3.6.1	cmamedB664
CmaCh02G011310	Silver-seed gourd	carcmaB0756
CmaCh02G011310	Silver-seed gourd	carcmaB1369
CmaCh02G011310	Cucumber (Chinese Long) v3	cmacucB0721
CmaCh02G011310	Cucumber (Chinese Long) v3	cmacucB0723
CmaCh02G011310	Cucumber (Chinese Long) v3	cmacucB0735
CmaCh02G011310	Watermelon (97103) v2	cmawmbB604
CmaCh02G011310	Watermelon (97103) v2	cmawmbB649
CmaCh02G011310	Wax gourd	cmawgoB0727
CmaCh02G011310	Cucurbita maxima (Rimu)	cmacmaB263
CmaCh02G011310	Cucurbita maxima (Rimu)	cmacmaB313
CmaCh02G011310	Cucurbita maxima (Rimu)	cmacmaB346
CmaCh02G011310	Cucurbita maxima (Rimu)	cmacmaB396
CmaCh02G011310	Cucumber (Gy14) v1	cgycmaB0602
CmaCh02G011310	Cucurbita moschata (Rifu)	cmacmoB584
CmaCh02G011310	Cucurbita moschata (Rifu)	cmacmoB587
CmaCh02G011310	Cucurbita moschata (Rifu)	cmacmoB591
CmaCh02G011310	Wild cucumber (PI 183967)	cmacpiB618
CmaCh02G011310	Cucumber (Chinese Long) v2	cmacuB612
CmaCh02G011310	Melon (DHL92) v3.5.1	cmameB527
CmaCh02G011310	Melon (DHL92) v3.5.1	cmameB579
CmaCh02G011310	Watermelon (Charleston Gray)	cmawcgB559
CmaCh02G011310	Watermelon (Charleston Gray)	cmawcgB563
CmaCh02G011310	Watermelon (97103) v1	cmawmB564