CmaCh02G011310.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G011310.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_15
Location	Cma_Chr02 : 6696362 .. 6696625 (+)
Sequence length	264

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCAGAGCAGCGCCTGTCTGTCCTACGAGAAGCTTAACGGCGTCGCCACCTGGCTCGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGCGCTGTTCCTGCATCAATCTCTCAACCTCCGACGACCACGAAGATCTCGATGAGGCTCACGATCGCCCTCTCATGTACTGCACATCCACTTCTTCCTCCGTCATTCGCAGCTTCGAACCGCTTCCTCCGCCGGTCAATGACGTTGCCAATCTCCCCGTCTGA

mRNA sequence

ATGGAGAATCAGAGCAGCGCCTGTCTGTCCTACGAGAAGCTTAACGGCGTCGCCACCTGGCTCGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGCGCTGTTCCTGCATCAATCTCTCAACCTCCGACGACCACGAAGATCTCGATGAGGCTCACGATCGCCCTCTCATGTACTGCACATCCACTTCTTCCTCCGTCATTCGCAGCTTCGAACCGCTTCCTCCGCCGGTCAATGACGTTGCCAATCTCCCCGTCTGA

Coding sequence (CDS)

ATGGAGAATCAGAGCAGCGCCTGTCTGTCCTACGAGAAGCTTAACGGCGTCGCCACCTGGCTCGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGCGCTGTTCCTGCATCAATCTCTCAACCTCCGACGACCACGAAGATCTCGATGAGGCTCACGATCGCCCTCTCATGTACTGCACATCCACTTCTTCCTCCGTCATTCGCAGCTTCGAACCGCTTCCTCCGCCGGTCAATGACGTTGCCAATCTCCCCGTCTGA

Protein sequence

MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV

Homology

[Close]

BLAST of CmaCh02G011310.1 vs. TrEMBL
Match: A0A0A0KLU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139175 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.9e-38
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
          MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHED +EAHDRPLMY
Sbjct: 1  MENQST-CLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMY 60

Query: 61 CTSTSSSVIRSFEPLPPPVNDVANLPV 88
          CTSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 61 CTSTSSSVIRSFEPLPPPVNDVANLPV 86

[Close]

BLAST of CmaCh02G011310.1 vs. TrEMBL
Match: M5X8A0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013961mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-20
Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 1  MENQS-SACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHE-DLDEAHDRPL 60
          ME+QS S+CLSYEKLNGVA+WLGT VASAFFASLERCSCINLSTSDDHE + +EAHDRPL
Sbjct: 1  MESQSQSSCLSYEKLNGVASWLGTHVASAFFASLERCSCINLSTSDDHEMNPEEAHDRPL 60

Query: 61 MYCTSTSSSVIRSFEPLP-----PPVNDVANLPV 88
          M   S S ++       P        NDV NLPV
Sbjct: 61 MLFASRSVNLSDHRPHYPSSSSSSAPNDVVNLPV 94

[Close]

BLAST of CmaCh02G011310.1 vs. TrEMBL
Match: A0A061G349_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015451 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-18
Identity = 60/89 (67.42%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
          MENQ S CLSY     +A WLGTSVA AFFASLERCSCINLSTSDD +D  EAHDRPLM+
Sbjct: 1  MENQGS-CLSY-----MAAWLGTSVAQAFFASLERCSCINLSTSDDADD-SEAHDRPLMF 60

Query: 61 --CTSTSSSVIRSFEPLPPPVNDVANLPV 88
            C+S  SSV    + LPP  NDV NLPV
Sbjct: 61 TNCSSICSSVTSRTDNLPP--NDVVNLPV 80

[Close]

BLAST of CmaCh02G011310.1 vs. TrEMBL
Match: A0A067JIY9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27126 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-16
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
          M+N    C SYEKL     W+G SV SAFFASLERC+CINLST+DD ED +EAHDRPLM+
Sbjct: 1  MDNTMGNCWSYEKLK----WVGMSVVSAFFASLERCACINLSTADDAEDAEEAHDRPLMF 60

Query: 61 CTSTSSSVIRS 72
          C S S+S + S
Sbjct: 61 CNSISNSSVSS 67

[Close]

BLAST of CmaCh02G011310.1 vs. TrEMBL
Match: W9SCE5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011856 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-16
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHE-DLDEAHDRPLM 60
          MENQ +   + EK+NG+A  LGT VASAFFASLERCSCINLST+DDH+ D DE+HDRPLM
Sbjct: 1  MENQGTT--TCEKINGMANLLGTYVASAFFASLERCSCINLSTTDDHDADADESHDRPLM 60

Query: 61 YCTSTSSSVIRSFEPLPPPVNDVANLPV 88
             S+S S+  S   +    NDV NLPV
Sbjct: 61 --LSSSRSLNLSDHRVSASRNDVVNLPV 84

[Close]

BLAST of CmaCh02G011310.1 vs. TAIR10
Match: AT4G10810.1 (AT4G10810.1 unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-13
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 10 SYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPL 59
          S EKL+  A+W+ T+V SAFFASLERCSC+NLSTSDD ++ +E+H+RPL
Sbjct: 21 SLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEESHNRPL 69

[Close]

BLAST of CmaCh02G011310.1 vs. TAIR10
Match: AT4G24026.1 (AT4G24026.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.5e-11
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 6  SACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTS--DDHEDLDEAHDRPL 59
          S   S EK++  A+W+  +V SAFF SLERC+C+NLSTS  DD +D DE+H RPL
Sbjct: 12 STTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDDESHHRPL 66

[Close]

BLAST of CmaCh02G011310.1 vs. NCBI nr
Match: gi|778698756|ref|XP_011654597.1| (PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.5e-38
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
           MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHED +EAHDRPLMY
Sbjct: 40  MENQST-CLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMY 99

Query: 61  CTSTSSSVIRSFEPLPPPVNDVANLPV 88
           CTSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 100 CTSTSSSVIRSFEPLPPPVNDVANLPV 125

[Close]

BLAST of CmaCh02G011310.1 vs. NCBI nr
Match: gi|700194662|gb|KGN49839.1| (hypothetical protein Csa_5G139175 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.5e-38
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
          MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHED +EAHDRPLMY
Sbjct: 1  MENQST-CLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMY 60

Query: 61 CTSTSSSVIRSFEPLPPPVNDVANLPV 88
          CTSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 61 CTSTSSSVIRSFEPLPPPVNDVANLPV 86

[Close]

BLAST of CmaCh02G011310.1 vs. NCBI nr
Match: gi|778698775|ref|XP_011654601.1| (PREDICTED: uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.5e-38
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
           MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHED +EAHDRPLMY
Sbjct: 39  MENQST-CLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMY 98

Query: 61  CTSTSSSVIRSFEPLPPPVNDVANLPV 88
           CTSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 99  CTSTSSSVIRSFEPLPPPVNDVANLPV 124

[Close]

BLAST of CmaCh02G011310.1 vs. NCBI nr
Match: gi|659074498|ref|XP_008437637.1| (PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1   MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDLDEAHDRPLMY 60
           MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHED +EAHDRPLMY
Sbjct: 34  MENQST-CLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMY 93

Query: 61  CTSTSSS-VIRSFEPLPPPVNDVANLPV 88
           CTSTSSS VIRSFEPLPPPVNDVANLPV
Sbjct: 94  CTSTSSSVVIRSFEPLPPPVNDVANLPV 120

[Close]

BLAST of CmaCh02G011310.1 vs. NCBI nr
Match: gi|657970070|ref|XP_008376768.1| (PREDICTED: uncharacterized protein LOC103439904 [Malus domestica])

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-21
Identity = 65/104 (62.50%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 1   MENQS-SACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHE-DLDEAHDRPL 60
           M +QS S+CLSYEK+NGVA+WLGT VASAFFASLERCSCINLSTSDDHE + +EAHDRPL
Sbjct: 1   MGSQSQSSCLSYEKINGVASWLGTHVASAFFASLERCSCINLSTSDDHETNPEEAHDRPL 60

Query: 61  M---------------YCTSTSSSVIRSFEPLPPPVNDVANLPV 88
           M               Y +STSS+   S     PP NDV NLPV
Sbjct: 61  MLFASRSVNLSDHRPHYVSSTSSASASSSS--APPPNDVVNLPV 102

The following BLAST results are available for this feature:

BLAST of CmaCh02G011310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G011310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLU3_CUCSA	5.9e-38	93.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139175 PE=4 SV=1	[more]
M5X8A0_PRUPE	2.5e-20	65.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013961mg PE=4 SV=1	[more]
A0A061G349_THECC	2.3e-18	67.42	Uncharacterized protein OS=Theobroma cacao GN=TCM_015451 PE=4 SV=1	[more]
A0A067JIY9_JATCU	3.7e-16	63.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27126 PE=4 SV=1	[more]
W9SCE5_9ROSA	8.3e-16	61.36	Uncharacterized protein OS=Morus notabilis GN=L484_011856 PE=4 SV=1	[more]

BLAST of CmaCh02G011310.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10810.1	3.4e-13	65.31	unknown protein	[more]
AT4G24026.1	5.5e-11	56.36	unknown protein	[more]

BLAST of CmaCh02G011310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698756\|ref\|XP_011654597.1\|	8.5e-38	93.10	PREDICTED: uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus]	[more]
gi\|700194662\|gb\|KGN49839.1\|	8.5e-38	93.10	hypothetical protein Csa_5G139175 [Cucumis sativus]	[more]
gi\|778698775\|ref\|XP_011654601.1\|	8.5e-38	93.10	PREDICTED: uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus]	[more]
gi\|659074498\|ref\|XP_008437637.1\|	2.1e-36	92.05	PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo]	[more]
gi\|657970070\|ref\|XP_008376768.1\|	4.2e-21	62.50	PREDICTED: uncharacterized protein LOC103439904 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G011310	CmaCh02G011310	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G011310.1	CmaCh02G011310.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G011310.1.exon.1	CmaCh02G011310.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G011310.1.CDS.1	CmaCh02G011310.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34061	FAMILY NOT NAMED	coord: 3..60 score: 5.6