Carg24530 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24530
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tetratricopeptide-like helical
Location	Cucurbita_argyrosperma_scaffold_121 : 391298 .. 392375 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACCCAAAAAGGGAAAACGAAAGAAAACTCTGCCATTTCAAAACCTTCGCAAATTGCAGCTATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAATAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATAACGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGTGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTAATCGAAGTCTAGAATTATCAAATTGAAAGTCTGCTTTGATCTGAAATCCTGAAATTCTGAAATCTAATGGAATATCACACTTTAATTTCTTTGATTTGATTTGATTGATGATGTAAAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGTAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGGTAATTTTCGATATCTGGATCGAGCAGTTTAGCCCTAATTTCATGAACTGGAAGACTCTGAATGTTTGAATTTGTTTGTGAAGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCGGCTCTGGTTGCGGCGTTTTAA

mRNA sequence

AAAAACCCAAAAAGGGAAAACGAAAGAAAACTCTGCCATTTCAAAACCTTCGCAAATTGCAGCTATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAATAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATAACGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGTGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGTAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCGGCTCTGGTTGCGGCGTTTTAA

Coding sequence (CDS)

ATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAATAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATAACGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGTGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGTAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCGGCTCTGGTTGCGGCGTTTTAA

Protein sequence

MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNWSGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEEATAVAPAPAPALVAAF

Homology

[Close]

BLAST of Carg24530 vs. NCBI nr
Match: XP_022963763.1 (uncharacterized protein LOC111463957 [Cucurbita moschata])

HSP 1 Score: 346.7 bits (888), Expect = 7.2e-92
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
           SGIRRAASESDI+RSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120

Query: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 179
           FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE
Sbjct: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 178

[Close]

BLAST of Carg24530 vs. NCBI nr
Match: XP_023554672.1 (uncharacterized protein LOC111811867 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.8 bits (878), Expect = 1.0e-90
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
           SGIRRAASESDI+RSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHR SFADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRGSFADTE 120

Query: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 179
           FLNSGIVSGDGGDFVADKF+DGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE
Sbjct: 121 FLNSGIVSGDGGDFVADKFTDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 178

[Close]

BLAST of Carg24530 vs. NCBI nr
Match: XP_022967316.1 (uncharacterized protein LOC111466874 [Cucurbita maxima])

HSP 1 Score: 332.0 bits (850), Expect = 1.8e-87
Identity = 172/179 (96.09%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
           SGIRRAASESDI+RSLHEVSSPYDQFGGFRSRYWSVPS IPE+EFLNQDEFHRDS ADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120

Query: 121 FLNSGIVSGDGGDFVA-DKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 179
           FLNSGIVSGDGGDFVA DKF+DGSSESSKIRAYYEEMLKSNPSD LILRNYGKFLHEVE
Sbjct: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVE 179

[Close]

BLAST of Carg24530 vs. NCBI nr
Match: XP_022930988.1 (uncharacterized protein LOC111437316 [Cucurbita moschata])

HSP 1 Score: 225.7 bits (574), Expect = 1.9e-55
Identity = 121/181 (66.85%), Postives = 146/181 (80.66%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL+RTVS+PV+  +  ASSSFSNY+PL+G  +G  SS+SSPKISLHFE+N+ RG+N 
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGF--RSRYWSVPSEIPEDEFLNQDEFHRDSFA- 120
           SGIRRA+SESDI+RSLHEVS+PYDQFGG   RSR  S  SEIPE+EFLNQDEF  DS   
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEV 179
           D+  L+SGI   DG +F  D F DGS++ +KI AYYEE+LK NP+DAL+LRNYGKFLHEV
Sbjct: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

[Close]

BLAST of Carg24530 vs. NCBI nr
Match: XP_023532088.1 (uncharacterized protein LOC111794359 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.6 bits (571), Expect = 4.2e-55
Identity = 120/181 (66.30%), Postives = 146/181 (80.66%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL+RTVS+PV+  +  ASSSFSNY+PL+G  +G  SS+SSPKISLHFE+N+ RG+N 
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGF--RSRYWSVPSEIPEDEFLNQDEFHRDSFA- 120
           SGIRRA+SESDI+RSLHEVS+PYDQFGG   RSR  S  SEIPE+EFLNQDEF  DS   
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEV 179
           D+  L++GI   DG +F  D F DGS++ +KI AYYEE+LK NP+DAL+LRNYGKFLHEV
Sbjct: 121 DSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

[Close]

BLAST of Carg24530 vs. TAIR10
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10
Identity = 63/201 (31.34%), Postives = 91/201 (45.27%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPL-----YGALSGQNSSISSPKISLHFEINHR 60
           M+S L+RT S+PVL + + +  S     P+       +LS      +  KIS+  + N  
Sbjct: 1   MKSLLMRTGSMPVLQNRLISGGSSRKMTPISRTNSVESLSSYGERFAGGKISIEVKAN-- 60

Query: 61  RGKNWSGIRRAASESDITRS---LHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFH 120
                 G+RR  SESD+ RS   L  V S               P+ IPED+   ++E  
Sbjct: 61  -----VGMRRVLSESDVIRSERMLKRVGSK------------PSPARIPEDDEAGEEEIR 120

Query: 121 RDSFAD--TEFLNSGI------VSGDG-------GDFVADKFSDGSSESSKIRAYYEEML 179
              FAD     ++ G+       +G G                    + SKI  YY EML
Sbjct: 121 ---FADGWGSMISGGLPVEEKCFTGGGXXXXXXXXXXXXXXXXXXXEDKSKIGDYYREML 179

[Close]

BLAST of Carg24530 vs. TrEMBL
Match: tr|A0A1S3CQ68|A0A1S3CQ68_CUCME (uncharacterized protein LOC103503559 OS=Cucumis melo OX=3656 GN=LOC103503559 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.0e-33
Identity = 99/181 (54.70%), Postives = 118/181 (65.19%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL+RT SVP+LS    AS   +N +PLYG LS  NSS SSP+ISLH   N     N 
Sbjct: 1   MKSALLRTGSVPLLSPTTTAS---NNKQPLYGVLSCHNSSASSPRISLHCTRN-----NS 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYW--SVPSEIPEDEFLNQ-DEFHRDSF- 120
           + IRRAASESDI RSLHEVS+  DQF G  SR    S PS+IPE+EF+++ D+F  DS  
Sbjct: 61  NRIRRAASESDIVRSLHEVSNTSDQFSGLASRSLSRSFPSKIPEEEFIDEDDQFDSDSME 120

Query: 121 ADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHE 178
            D E+LN               +  G ++ SKI AYYE MLK NPSDAL+LRNYGKFLHE
Sbjct: 121 EDKEYLN---------------YRVGVNDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHE 158

[Close]

BLAST of Carg24530 vs. TrEMBL
Match: tr|A0A0A0LH65|A0A0A0LH65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901150 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.0e-33
Identity = 105/187 (56.15%), Postives = 119/187 (63.64%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYK-PLYGALSGQNSSISSPK-ISLHF-EINHRRG 60
           M+SAL+RT SVP+LS     SSSFSN K PLYG  S  NSS SSP+ ISLH+   NH   
Sbjct: 1   MKSALLRTGSVPLLSPTTTPSSSFSNNKQPLYGLFSSHNSSTSSPRSISLHYCTRNHS-- 60

Query: 61  KNWSGIRRAASESDITRSLHEVSSPYDQFGGFRSR---YWSVPSEIPEDEFLNQDE---F 120
              + IRRAASESDI RSLH+VS+  DQF G  SR     S PS+IPE+EFLN+D    F
Sbjct: 61  ---NHIRRAASESDIVRSLHQVSNTSDQFSGLASRSRSRSSFPSKIPEEEFLNEDHDQIF 120

Query: 121 HRDSF-ADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNY 178
             DS   D  FLNS I               G ++ SKI AYYE MLK NPSDAL+LRNY
Sbjct: 121 DGDSMEEDKVFLNSPI---------------GINDRSKIGAYYEHMLKLNPSDALLLRNY 167

[Close]

BLAST of Carg24530 vs. TrEMBL
Match: tr|A0A1R3I402|A0A1R3I402_COCAP (Tetratricopeptide-like helical OS=Corchorus capsularis OX=210143 GN=CCACVL1_15080 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 80/207 (38.65%), Postives = 102/207 (49.28%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAAS---SSFSNYKPLYGALSGQ---NSSISSPKISLHFEINH 60
           M++ L+R  SVPV S AV +S   SS S      G  SG+    SS  SP ISLHF  + 
Sbjct: 1   MKAVLLRAGSVPVSSQAVCSSPKVSSISRQSSFGGVCSGERAGGSSPCSPIISLHFRTDK 60

Query: 61  RRGK-NWSGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHR 120
           R+ K + S IRR AS++DI RS   +       GG R      P+ IPE+E+L+  E   
Sbjct: 61  RKPKESHSHIRRTASDTDIMRSDSRIP------GGSR----CFPAGIPEEEYLSDAEVDS 120

Query: 121 D----------------------SFADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRA 179
           +                        +  E   SG   G+GG    D   D   + +KI  
Sbjct: 121 EFRTLVKGKGSDRVSFPPIWPEFGISMEEIGFSGDGFGNGGKSGGDHGDDSFGDKNKIGD 180

[Close]

BLAST of Carg24530 vs. TrEMBL
Match: tr|A0A1R3JEP8|A0A1R3JEP8_9ROSI (Tetratricopeptide-like helical OS=Corchorus olitorius OX=93759 GN=COLO4_16996 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-16
Identity = 80/207 (38.65%), Postives = 102/207 (49.28%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAAS---SSFSNYKPLYGALSGQ---NSSISSPKISLHFEINH 60
           M++ L+R  SVPV S AV +S   SS S      G  SG+    SS  SP ISLHF  + 
Sbjct: 1   MKAVLLRAGSVPVPSQAVCSSPKVSSISRQSSFGGVCSGERAGGSSPCSPIISLHFRTDK 60

Query: 61  RRGK-NWSGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHR 120
           R+ K + S IRR AS++DI RS   +       GG R      P+ IPE+E+L+  E   
Sbjct: 61  RKPKESHSHIRRTASDTDIMRSDSRIP------GGSRCS----PAGIPEEEYLSDAEVDS 120

Query: 121 D----------------------SFADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRA 179
           +                        +  E   SG   G+GG    D   D   + +KI  
Sbjct: 121 EFRTLVKGKGSDRVSFPPIWPEFGISMEEIGFSGDGFGNGGKSGGDHGDDSFGDKNKIGD 180

[Close]

BLAST of Carg24530 vs. TrEMBL
Match: tr|A0A1S2YZT7|A0A1S2YZT7_CICAR (uncharacterized protein LOC101496058 OS=Cicer arietinum OX=3827 GN=LOC101496058 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.6e-16
Identity = 73/178 (41.01%), Postives = 89/178 (50.00%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M ++LIRT SVPV +  +  S   S  +    A   +N  + SP++SLHF  N  +  N 
Sbjct: 1   MRASLIRTGSVPVQNWVLPGSPRISLTRQASFA-GDKNHHVQSPRLSLHFHSNCGKDTNP 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
            GI RA SES        + SP + FG  R+              LN+   H     DT 
Sbjct: 61  EGINRALSES------AAIKSPSENFGFCRN--------------LNRIGTHYSPLQDTG 120

Query: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 179
           F   G    D GD        G  E  KI AYYEEMLKSNP+DAL+LRNYGKFLHEVE
Sbjct: 121 FFGGGC---DHGDTTVTTGGSG-GERIKIGAYYEEMLKSNPTDALLLRNYGKFLHEVE 153

The following BLAST results are available for this feature:

BLAST of Carg24530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963763.1	7.2e-92	99.44	uncharacterized protein LOC111463957 [Cucurbita moschata]	[more]
XP_023554672.1	1.0e-90	98.31	uncharacterized protein LOC111811867 [Cucurbita pepo subsp. pepo]	[more]
XP_022967316.1	1.8e-87	96.09	uncharacterized protein LOC111466874 [Cucurbita maxima]	[more]
XP_022930988.1	1.9e-55	66.85	uncharacterized protein LOC111437316 [Cucurbita moschata]	[more]
XP_023532088.1	4.2e-55	66.30	uncharacterized protein LOC111794359 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg24530 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17940.1	2.2e-10	31.34	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg24530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CQ68\|A0A1S3CQ68_CUCME	5.0e-33	54.70	uncharacterized protein LOC103503559 OS=Cucumis melo OX=3656 GN=LOC103503559 PE=...	[more]
tr\|A0A0A0LH65\|A0A0A0LH65_CUCSA	5.0e-33	56.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901150 PE=4 SV=1	[more]
tr\|A0A1R3I402\|A0A1R3I402_COCAP	2.5e-16	38.65	Tetratricopeptide-like helical OS=Corchorus capsularis OX=210143 GN=CCACVL1_1508...	[more]
tr\|A0A1R3JEP8\|A0A1R3JEP8_9ROSI	4.3e-16	38.65	Tetratricopeptide-like helical OS=Corchorus olitorius OX=93759 GN=COLO4_16996 PE...	[more]
tr\|A0A1S2YZT7\|A0A1S2YZT7_CICAR	9.6e-16	41.01	uncharacterized protein LOC101496058 OS=Cicer arietinum OX=3827 GN=LOC101496058 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24530-RA	Carg24530-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 142..245 e-value: 7.3E-12 score: 46.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 151..252
None	No IPR available	PANTHER	PTHR26312:SF53	SUBFAMILY NOT NAMED	coord: 6..256
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 6..256
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 152..233 score: 11.181

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24530	Cla016219	Watermelon (97103) v1	carwmB0974
Carg24530	Csa3G901150	Cucumber (Chinese Long) v2	carcuB0983
Carg24530	MELO3C003424	Melon (DHL92) v3.5.1	carmeB0949
Carg24530	ClCG09G011810	Watermelon (Charleston Gray)	carwcgB0948
Carg24530	CSPI03G46560	Wild cucumber (PI 183967)	carcpiB1006
Carg24530	Cucsa.312970	Cucumber (Gy14) v1	carcgyB1087
Carg24530	CmaCh02G016230	Cucurbita maxima (Rimu)	carcmaB1340
Carg24530	CmaCh19G002270	Cucurbita maxima (Rimu)	carcmaB1339
Carg24530	CmoCh02G016680	Cucurbita moschata (Rifu)	carcmoB1302
Carg24530	CmoCh19G002410	Cucurbita moschata (Rifu)	carcmoB1301
Carg24530	LsiUNG000260	Bottle gourd (USVL1VR-Ls)	carlsiB887
Carg24530	Cp4.1LG15g02090	Cucurbita pepo (Zucchini)	carcpeB1344
Carg24530	Cp4.1LG05g00170	Cucurbita pepo (Zucchini)	carcpeB1346
Carg24530	CsGy3G044000	Cucumber (Gy14) v2	carcgybB0956
Carg24530	MELO3C003424.2	Melon (DHL92) v3.6.1	carmedB0955
Carg24530	CsaV3_3G049010	Cucumber (Chinese Long) v3	carcucB1011
Carg24530	Cla97C09G174580	Watermelon (97103) v2	carwmbB1025
Carg24530	Bhi05G000312	Wax gourd	carwgoB1139

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24530	Carg08849	Silver-seed gourd	carcarB612

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24530	Silver-seed gourd	carcarB487
Carg24530	Cucumber (Gy14) v2	carcgybB0957
Carg24530	Cucumber (Gy14) v1	carcgyB1088
Carg24530	Cucurbita maxima (Rimu)	carcmaB1338
Carg24530	Cucurbita moschata (Rifu)	carcmoB1300
Carg24530	Cucurbita pepo (Zucchini)	carcpeB1343
Carg24530	Wild cucumber (PI 183967)	carcpiB1007
Carg24530	Cucumber (Chinese Long) v2	carcuB0984
Carg24530	Cucumber (Chinese Long) v3	carcucB1012
Carg24530	Bottle gourd (USVL1VR-Ls)	carlsiB889
Carg24530	Melon (DHL92) v3.5.1	carmeB0950
Carg24530	Melon (DHL92) v3.6.1	carmedB0956
Carg24530	Watermelon (Charleston Gray)	carwcgB0949
Carg24530	Watermelon (97103) v1	carwmB0976
Carg24530	Watermelon (97103) v2	carwmbB1023