Cp4.1LG05g00170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g00170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
LocationCp4.1LG05 : 899558 .. 900810 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCGGCTCTCCTCAGAACTGTCTCCATTCCCGTCATCTGGCCGTCCGGCACCGCTTCGTCATCCTTCTCCAATTACAGACCGTTGCATGGAGTTTTCACCGGCCACAAGAGTTCCGTTTCGTCTCCAAAGATCTCTCTGCATTTTGAGATGAATAATCCTAGAGGAAGGAATTCGAGTGGTATACGAAGGGCGTCATCGGAGAGCGACATCTCTCGATCGCTGCATGAGGTTTCGAATCCGTATGATCAATTTGGAGGAGTCGGATCTCGATCTCGGACTCGATCCTCTCATTCTGAAATACCAGAGGAGGAGTTTTTGAACCAGGATGAATTTGACAGTGATTCGATGGAGGACGACTCTGGATGTTTGGATAACGGAATCGGCTGCAGTGATGGCGCTGAATTTTTTACAGATATGTTTTATGACGGAAGTAATGACCGTAATAAGATCGGAGCGTACTACGAAGAGTTGCTGAAGTTGAACCCTAACGACGCTCTGTTACTGAGAAACTACGGAAAATTCTTACATGAGGTAATTGAACATTCGAATTGTCAATTTGAAAGTCTCTTTCAATCTGAAATCGAATGAAATCGGCTCTTGCATTTTACTTTGTTTGATTTGATTTGATTTGATCCATCGTGTAAAGGTGGAGAAAGATCATGTGAGATCAGAGGAATGCTACAGCAGAGCAATATTGGCGAATCCAAGCGACGGAGAGTTGTTGGCTTTGTATGGAAAACTGGTGTGGGAGTCTCACAAAGACAAGCAAAGAGCTGAATATTACTTCGACCGCGCCGTGCGTGCCTCCCCTAACGACTGGTAACTTCCGATCTCTGAATCTAGCAATGTAGCCCTAAATTGTCCGAATTCAATGGCTCTGGTTCTGAATGATTCAGTTTGTGTGTGTAGTTTGGTGATTGGTTATTACGCCTATTTCTTGTGGCAAATTGAAGATGATGAAGAACAAGAGGCGGCGGAGGTATGGCCGGCGGCTATGGTAGCGGCGTTTTAATTGATCAAATGGATTGGGAGACGACAGTTTTGGCAAAATAGGAGAGGAAGAGGCAAGAAAGAAGTGCATGCGATTCCTGAATGGGCATTTGAAGAGGGAACAAAGATTAGCATCCGGGTGCTCTCAATATCTTATTTTATATTTATATTTAAATCACTTTTACCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTTCCGTTCCGTAAAAAGTGTAAATTAGACTCTCGGGAAGTG

mRNA sequence

ATGAAATCGGCTCTCCTCAGAACTGTCTCCATTCCCGTCATCTGGCCGTCCGGCACCGCTTCGTCATCCTTCTCCAATTACAGACCGTTGCATGGAGTTTTCACCGGCCACAAGAGTTCCGTTTCGTCTCCAAAGATCTCTCTGCATTTTGAGATGAATAATCCTAGAGGAAGGAATTCGAGTGGTATACGAAGGGCGTCATCGGAGAGCGACATCTCTCGATCGCTGCATGAGGTTTCGAATCCGTATGATCAATTTGGAGGAGTCGGATCTCGATCTCGGACTCGATCCTCTCATTCTGAAATACCAGAGGAGGAGTTTTTGAACCAGGATGAATTTGACAGTGATTCGATGGAGGACGACTCTGGATGTTTGGATAACGGAATCGGCTGCAGTGATGGCGCTGAATTTTTTACAGATATGTTTTATGACGGAAGTAATGACCGTAATAAGATCGGAGCGTACTACGAAGAGTTGCTGAAGTTGAACCCTAACGACGCTCTGTTACTGAGAAACTACGGAAAATTCTTACATGAGGTGGAGAAAGATCATGTGAGATCAGAGGAATGCTACAGCAGAGCAATATTGGCGAATCCAAGCGACGGAGAGTTGTTGGCTTTGTATGGAAAACTGGTGTGGGAGTCTCACAAAGACAAGCAAAGAGCTGAATATTACTTCGACCGCGCCGTGCGTGCCTCCCCTAACGACTGTTTGGTGATTGGTTATTACGCCTATTTCTTGTGGCAAATTGAAGATGATGAAGAACAAGAGGCGGCGGAGGTATGGCCGGCGGCTATGGTAGCGGCGTTTTAATTGATCAAATGGATTGGGAGACGACAGTTTTGGCAAAATAGGAGAGGAAGAGGCAAGAAAGAAGTGCATGCGATTCCTGAATGGGCATTTGAAGAGGGAACAAAGATTAGCATCCGGGTGCTCTCAATATCTTATTTTATATTTATATTTAAATCACTTTTACCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTTCCGTTCCGTAAAAAGTGTAAATTAGACTCTCGGGAAGTG

Coding sequence (CDS)

ATGAAATCGGCTCTCCTCAGAACTGTCTCCATTCCCGTCATCTGGCCGTCCGGCACCGCTTCGTCATCCTTCTCCAATTACAGACCGTTGCATGGAGTTTTCACCGGCCACAAGAGTTCCGTTTCGTCTCCAAAGATCTCTCTGCATTTTGAGATGAATAATCCTAGAGGAAGGAATTCGAGTGGTATACGAAGGGCGTCATCGGAGAGCGACATCTCTCGATCGCTGCATGAGGTTTCGAATCCGTATGATCAATTTGGAGGAGTCGGATCTCGATCTCGGACTCGATCCTCTCATTCTGAAATACCAGAGGAGGAGTTTTTGAACCAGGATGAATTTGACAGTGATTCGATGGAGGACGACTCTGGATGTTTGGATAACGGAATCGGCTGCAGTGATGGCGCTGAATTTTTTACAGATATGTTTTATGACGGAAGTAATGACCGTAATAAGATCGGAGCGTACTACGAAGAGTTGCTGAAGTTGAACCCTAACGACGCTCTGTTACTGAGAAACTACGGAAAATTCTTACATGAGGTGGAGAAAGATCATGTGAGATCAGAGGAATGCTACAGCAGAGCAATATTGGCGAATCCAAGCGACGGAGAGTTGTTGGCTTTGTATGGAAAACTGGTGTGGGAGTCTCACAAAGACAAGCAAAGAGCTGAATATTACTTCGACCGCGCCGTGCGTGCCTCCCCTAACGACTGTTTGGTGATTGGTTATTACGCCTATTTCTTGTGGCAAATTGAAGATGATGAAGAACAAGAGGCGGCGGAGGTATGGCCGGCGGCTATGGTAGCGGCGTTTTAA

Protein sequence

MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNSSGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMEDDSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVIGYYAYFLWQIEDDEEQEAAEVWPAAMVAAF
Homology
[Close]
BLAST of Cp4.1LG05g00170 vs. TrEMBL
Match: A0A0A0LH65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G901150 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 3.5e-81
Identity = 171/276 (61.96%), Postives = 210/276 (76.09%), Query Frame = 1 

Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYR-PLHGVFTGHKSSVSSPK-ISLHFEMNNPRGR 60
           MKSALLRT S+P++ P+ T SSSFSN + PL+G+F+ H SS SSP+ ISLH+   N    
Sbjct: 1   MKSALLRTGSVPLLSPTTTPSSSFSNNKQPLYGLFSSHNSSTSSPRSISLHYCTRN---- 60

Query: 61  NSSGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSH-SEIPEEEFLNQDE---FD 120
           +S+ IRRA+SESDI RSLH+VSN  DQF G+ SRSR+RSS  S+IPEEEFLN+D    FD
Sbjct: 61  HSNHIRRAASESDIVRSLHQVSNTSDQFSGLASRSRSRSSFPSKIPEEEFLNEDHDQIFD 120

Query: 121 SDSMEDDSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYG 180
            DSME+D   L++ IG                NDR+KIGAYYE +LKLNP+DALLLRNYG
Sbjct: 121 GDSMEEDKVFLNSPIGI---------------NDRSKIGAYYEHMLKLNPSDALLLRNYG 180

Query: 181 KFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASP 240
           KFLHEV  D  R+EECYSRAILA+P+DGELLALYGKLVW++ +DKQRA+YYFDRAV ASP
Sbjct: 181 KFLHEVANDSKRAEECYSRAILASPTDGELLALYGKLVWDTQRDKQRAQYYFDRAVYASP 240

Query: 241 NDCLVIGYYAYFLWQIEDDEEQEAAEVWPAAMVAAF 271
           NDCLV G+YA+F+W++E+DE   +AE   A MV A+
Sbjct: 241 NDCLVTGHYAHFMWEVEEDEAAASAEDSAAGMVRAY 257

[Close]
BLAST of Cp4.1LG05g00170 vs. TrEMBL
Match: A0A0B0NU07_GOSAR (Adenosine monophosphate-protein transferase FICD OS=Gossypium arboreum GN=F383_21388 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.9e-50
Identity = 130/279 (46.59%), Postives = 169/279 (60.57%), Query Frame = 1 

Query: 1   MKSALLRTVSIPVIWPS--GTASSSFSNYRPLHGVFTGHKS--SVSSPKISLHFEMNNPR 60
           MK+A+LR  S+PV   +  G+   S S       VF+G +S  S+SSP +SLHF M+  +
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFSGERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GRNSSG-IRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDS 120
              S   IRRA SE+DI +S   V          GSR  T      IPEEE+++  E D 
Sbjct: 61  PMESRAQIRRALSETDIIKSETRVPG--------GSRCFTAG----IPEEEYVSDYEIDG 120

Query: 121 DSMEDDSGCLD----NGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLR 180
               +    ++    +G G   G +   D   D   D+ K+G YY E+LKLNP D LLLR
Sbjct: 121 GCRTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKGKMGDYYREILKLNPGDPLLLR 180

Query: 181 NYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVR 240
           NYG+FLHEVEKD  R+EE Y RAILA+P DGE+L+LYG L+WE H+D+ RA+ YFDRAV 
Sbjct: 181 NYGRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGNLIWERHRDESRAKSYFDRAVT 240

Query: 241 ASPNDCLVIGYYAYFLWQIEDDEEQEAAEVWPAAMVAAF 271
           ASP+DC+V+G YA FLW  E+D+E+E       AMVAAF
Sbjct: 241 ASPDDCMVLGSYANFLWDAEEDDEEEVD--MSKAMVAAF 265

[Close]
BLAST of Cp4.1LG05g00170 vs. TrEMBL
Match: A0A0D2QZR9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G183900 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.1e-49
Identity = 129/279 (46.24%), Postives = 168/279 (60.22%), Query Frame = 1 

Query: 1   MKSALLRTVSIPVIWPS--GTASSSFSNYRPLHGVFTGHKS--SVSSPKISLHFEMNNPR 60
           MK+A+LR  S+PV   +  G+   S S       VF   +S  S+SSP +SLHF M+  +
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFPVERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GRNSSG-IRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDS 120
            + S   IRRA SE+DI +S   V          GSR  T      IPEEE+++  E D 
Sbjct: 61  PKESRAQIRRALSETDIIKSETRVPG--------GSRCFTAG----IPEEEYVSDYEIDG 120

Query: 121 DSMEDDSGCLD----NGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLR 180
               +    ++    +G G   G +   D   D   D+ K+G YY E+LKLNP D LLLR
Sbjct: 121 GFRTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKRKMGDYYREMLKLNPGDPLLLR 180

Query: 181 NYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVR 240
           NYG+FLHEVEKD  R+EE Y RAILA+P DGE+L+LYG L+WE H+D+ RA+ YFDRAV 
Sbjct: 181 NYGRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGDLIWERHRDESRAKSYFDRAVT 240

Query: 241 ASPNDCLVIGYYAYFLWQIEDDEEQEAAEVWPAAMVAAF 271
           ASP+DC+V+G YA FLW  E+D+E+E       AMVAAF
Sbjct: 241 ASPDDCMVLGSYANFLWDAEEDDEEEVE--MSKAMVAAF 265

[Close]
BLAST of Cp4.1LG05g00170 vs. TrEMBL
Match: A0A061G302_THECC (Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_015687 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.3e-48
Identity = 132/303 (43.56%), Postives = 180/303 (59.41%), Query Frame = 1 

Query: 1   MKSALLRTVSIPVIWPSGTASS--SFSNYRPLHGVFTGHKSSVS--SPKISLHFEMNNPR 60
           MK+ALLR  S+PV  P+  +S   S S    + G+++  ++  S  SP ISLHF MN  +
Sbjct: 1   MKAALLRAGSVPVPSPALCSSPKVSLSRQSSIGGIYSCERAGCSPCSPIISLHFPMNKRK 60

Query: 61  GRNS-SGIRRASSESDISRSLHEVSN---------PYDQF---GGVGSRSRT-------- 120
            + + + +RRA S++DI RS   +           P +++   G VG   RT        
Sbjct: 61  PKETHTHMRRALSDTDIIRSESRIPGGSRCFRAGIPEEEYLSDGEVGREFRTLVTGKGSD 120

Query: 121 RSSHSEIPEEEFLNQDEFDSDSMEDDSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAY 180
           R+S   I  E  ++ +E              +G G  +G +   D   D   D +KIG Y
Sbjct: 121 RASFESIWPEFGISMEEIGF-----------SGDGFGNGGKSGGDHGDDSFGDESKIGDY 180

Query: 181 YEELLKLNPNDALLLRNYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWES 240
           Y E+LKLNP+D+LLLRNYG+FLHEVEKD  R+EE Y RAILA+P DGE+L+LYGK +WE 
Sbjct: 181 YREMLKLNPSDSLLLRNYGRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGKFIWER 240

Query: 241 HKDKQRAEYYFDRAVRASPNDCLVIGYYAYFLWQIEDDEEQEAAE--------VWPAAMV 271
           H+D+ RA+ YFDRAV ASP+DC+V+G YA+F+W+ E+DEEQE  E        V P AMV
Sbjct: 241 HRDETRAKSYFDRAVAASPDDCMVLGSYAHFMWESEEDEEQEQEEKEMGAQVGVSP-AMV 291

[Close]
BLAST of Cp4.1LG05g00170 vs. TrEMBL
Match: B9SNT4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278170 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.0e-47
Identity = 127/284 (44.72%), Postives = 172/284 (60.56%), Query Frame = 1 

Query: 1   MKSALLRTVSIPVIWP--SGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGR 60
           MKS LLRT SI    P   G+   S S    +  V +G KS+ +SPK SLH E+N+ +  
Sbjct: 1   MKSLLLRTGSIQAHAPVTCGSPKLSLSRRNSISSVLSGEKSTANSPKFSLHLEINSRK-- 60

Query: 61  NSSGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQ-------- 120
             + IRRA SE+DI RS  E          + SR+ + S  + I EEE+ N         
Sbjct: 61  RDTLIRRALSETDIIRSETEE---------MLSRAGSMSFPARILEEEYSNLTYIWPENG 120

Query: 121 ---DEFDSDSMEDDSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDA 180
              +E    S  D  G   N  G + G +       + S+D +KIG YY E+LK NPND+
Sbjct: 121 IPLEELGFSSGGDGFGKGKNSGGGNGGVDG------NSSDDLSKIGDYYTEMLKSNPNDS 180

Query: 181 LLLRNYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFD 240
           LLLRNYGKFLHEVE D  R+EE Y RAILA P DGE+L+LYGKL+W+  +D +RA+ YFD
Sbjct: 181 LLLRNYGKFLHEVEGDMERAEEYYGRAILAGPGDGEVLSLYGKLIWDRQRDGERAKAYFD 240

Query: 241 RAVRASPNDCLVIGYYAYFLWQIEDDEEQE---AAEVWPAAMVA 269
           +AV A+P+DC+V+G YA+F+W+ E++EE+E    A++ PA +VA
Sbjct: 241 QAVSAAPHDCMVMGSYAHFMWEAEEEEEEEINSKAQISPAMVVA 267

[Close]
BLAST of Cp4.1LG05g00170 vs. TAIR10
Match: AT4G17940.1 (AT4G17940.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 169.1 bits (427), Expect = 3.8e-42
Identity = 110/285 (38.60%), Postives = 159/285 (55.79%), Query Frame = 1 

Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGV-----FTGHKSSVSSPKISLHFEMNNP 60
           MKS L+RT S+PV+     +  S     P+         + +    +  KIS+  + N  
Sbjct: 1   MKSLLMRTGSMPVLQNRLISGGSSRKMTPISRTNSVESLSSYGERFAGGKISIEVKAN-- 60

Query: 61  RGRNSSGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFD- 120
                 G+RR  SESD+ RS   +         VGS+     S + IPE++   ++E   
Sbjct: 61  -----VGMRRVLSESDVIRSERMLKR-------VGSKP----SPARIPEDDEAGEEEIRF 120

Query: 121 --------SDSMEDDSGCLDNGIGCSDGAEF---FTDMFYDGSNDRNKIGAYYEELLKLN 180
                   S  +  +  C   G G   G+ +   + +    G  D++KIG YY E+L+ N
Sbjct: 121 ADGWGSMISGGLPVEEKCFTGG-GVGGGSGYSGGYGNGGGGGYEDKSKIGDYYREMLRSN 180

Query: 181 PNDALLLRNYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAE 240
           PN++LLL NYGKFL+EVEKD   +EE Y RAIL NP DGE L++YG+L+WE+ +D++RA+
Sbjct: 181 PNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQ 240

Query: 241 YYFDRAVRASPNDCLVIGYYAYFLWQIE---DDEEQEAAEVWPAA 266
            YFD+AV ASPNDC+V+G YA F+W+ E   DD+E+E  E W AA
Sbjct: 241 GYFDQAVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEEEEWMAA 266

[Close]
BLAST of Cp4.1LG05g00170 vs. TAIR10
Match: AT5G20190.1 (AT5G20190.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 125.9 bits (315), Expect = 3.7e-29
Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = 1 

Query: 144 DGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEVEKDHVRSEECYSRAILANPSDGE 203
           DG +D   +  +Y ++++ NP + + L NY KFL EV KD++++EE   RAIL +P+DG 
Sbjct: 150 DGGDDNTDV--HYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGN 209

Query: 204 LLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVIGYYAYFLWQIEDDEEQEAAE 261
           +LA+Y +LVW+ HKD  RAE YF++AV A+P DC V   YA FLW  E++EE+E  E
Sbjct: 210 VLAMYAELVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEEEEEKEE 264

[Close]
BLAST of Cp4.1LG05g00170 vs. TAIR10
Match: AT1G80130.1 (AT1G80130.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-26
Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 1 

Query: 144 DGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEVEKDHVRSEECYSRAILANPSDGE 203
           DG    +    YY E++  NP ++LL  NY KFL EV+ D  ++EE   RAIL N +DG 
Sbjct: 157 DGGRSEDATDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGN 216

Query: 204 LLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVIGYYAYFLWQIEDDEEQEA 259
           +L+LY  L+  +H+D+QRA  Y+ +AV+ SP DC V   YA FLW +++DEE EA
Sbjct: 217 VLSLYADLILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEA 271

[Close]
BLAST of Cp4.1LG05g00170 vs. TAIR10
Match: AT4G32340.1 (AT4G32340.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-25
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = 1 

Query: 145 GSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEVEKDHVRSEECYSRAILANPS-DGE 204
           G      +  YYEE+++  P D LLL NY +FL EV+ D  ++EE   RA+L+    DGE
Sbjct: 103 GGGGGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGE 162

Query: 205 LLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVIGYYAYFLWQIEDDEEQEAAE 261
           LL++YG L+W++H D  RA+ Y+D+AV++SP+DC V+  YA FLW  E++ E+E ++
Sbjct: 163 LLSMYGDLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEEVEEEESK 219

[Close]
BLAST of Cp4.1LG05g00170 vs. TAIR10
Match: AT1G04530.1 (AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-21
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 1 

Query: 134 GAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEVEKDHVRSEECYSR 193
           G+E   D+   G +D+N  G YY+ +L+  P   LLL+NY KFL E + D   +EE Y +
Sbjct: 106 GSEIKFDL--PGYDDKN-CGDYYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHK 165

Query: 194 AILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVIGYYAYFLWQIEDD 253
             +  PSDG  LA YG+LV + H+D+ +A  YF+RAV+ASP+D +V+  YA FLW+I  D
Sbjct: 166 CTVVEPSDGVALANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINAD 225

Query: 254 EEQE 258
           ++ E
Sbjct: 226 DDDE 225

[Close]
BLAST of Cp4.1LG05g00170 vs. NCBI nr
Match: gi|449437232|ref|XP_004136396.1| (PREDICTED: uncharacterized protein LOC101218835 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 5.1e-81
Identity = 171/276 (61.96%), Postives = 210/276 (76.09%), Query Frame = 1 

Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYR-PLHGVFTGHKSSVSSPK-ISLHFEMNNPRGR 60
           MKSALLRT S+P++ P+ T SSSFSN + PL+G+F+ H SS SSP+ ISLH+   N    
Sbjct: 1   MKSALLRTGSVPLLSPTTTPSSSFSNNKQPLYGLFSSHNSSTSSPRSISLHYCTRN---- 60

Query: 61  NSSGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSH-SEIPEEEFLNQDE---FD 120
           +S+ IRRA+SESDI RSLH+VSN  DQF G+ SRSR+RSS  S+IPEEEFLN+D    FD
Sbjct: 61  HSNHIRRAASESDIVRSLHQVSNTSDQFSGLASRSRSRSSFPSKIPEEEFLNEDHDQIFD 120

Query: 121 SDSMEDDSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYG 180
            DSME+D   L++ IG                NDR+KIGAYYE +LKLNP+DALLLRNYG
Sbjct: 121 GDSMEEDKVFLNSPIGI---------------NDRSKIGAYYEHMLKLNPSDALLLRNYG 180

Query: 181 KFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASP 240
           KFLHEV  D  R+EECYSRAILA+P+DGELLALYGKLVW++ +DKQRA+YYFDRAV ASP
Sbjct: 181 KFLHEVANDSKRAEECYSRAILASPTDGELLALYGKLVWDTQRDKQRAQYYFDRAVYASP 240

Query: 241 NDCLVIGYYAYFLWQIEDDEEQEAAEVWPAAMVAAF 271
           NDCLV G+YA+F+W++E+DE   +AE   A MV A+
Sbjct: 241 NDCLVTGHYAHFMWEVEEDEAAASAEDSAAGMVRAY 257

[Close]
BLAST of Cp4.1LG05g00170 vs. NCBI nr
Match: gi|659132057|ref|XP_008465993.1| (PREDICTED: uncharacterized protein LOC103503559 [Cucumis melo])

HSP 1 Score: 306.2 bits (783), Expect = 5.6e-80
Identity = 169/270 (62.59%), Postives = 204/270 (75.56%), Query Frame = 1 

Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60
           MKSALLRT S+P++ P+ TAS+   N +PL+GV + H SS SSP+ISLH   NN     S
Sbjct: 1   MKSALLRTGSVPLLSPTTTASN---NKQPLYGVLSCHNSSASSPRISLHCTRNN-----S 60

Query: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDE-FDSDSME 120
           + IRRA+SESDI RSLHEVSN  DQF G+ SRS +RS  S+IPEEEF+++D+ FDSDSME
Sbjct: 61  NRIRRAASESDIVRSLHEVSNTSDQFSGLASRSLSRSFPSKIPEEEFIDEDDQFDSDSME 120

Query: 121 DDSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180
           +D   L+  +G                NDR+KIGAYYE +LKLNP+DALLLRNYGKFLHE
Sbjct: 121 EDKEYLNYRVGV---------------NDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHE 180

Query: 181 VEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLV 240
           V  D  R+EECYSRAILA+P+DGELLALYGKLVW++ +DKQRA+YYFDRAV ASPNDCLV
Sbjct: 181 VVNDTKRAEECYSRAILASPTDGELLALYGKLVWDTERDKQRAQYYFDRAVYASPNDCLV 240

Query: 241 IGYYAYFLWQIEDDEEQEAAEVWPAAMVAA 270
            G+YA+F+WQ+EDD E   AE  PA MV A
Sbjct: 241 TGHYAHFMWQVEDD-EAALAEDSPAGMVTA 246

[Close]
BLAST of Cp4.1LG05g00170 vs. NCBI nr
Match: gi|225427169|ref|XP_002277674.1| (PREDICTED: uncharacterized protein LOC100245547 [Vitis vinifera])

HSP 1 Score: 211.5 bits (537), Expect = 1.9e-51
Identity = 133/295 (45.08%), Postives = 177/295 (60.00%), Query Frame = 1 

Query: 1   MKSALLRTVSIPV---IWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRG 60
           MK+ LLRT S+PV   ++P G+   SF  +  +  VF+  K+S++SP+ SLHF+ N+   
Sbjct: 1   MKAVLLRTGSVPVQSSLFP-GSPRVSFGFHDSVTRVFSRDKTSLNSPRFSLHFQNNSQGE 60

Query: 61  RNSSGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFD--- 120
             +  IRRA SESDI RS   +S    +  GVGS S      + IPEEE    D  D   
Sbjct: 61  VPARRIRRAMSESDIIRSESGIS----KLNGVGSHSFP----ARIPEEEEEEDDNDDEGG 120

Query: 121 -------SDSMEDDSGC------------LDNGIGCSDGAEFFTDMFYDGSNDRNKIGAY 180
                  S  +E+ +G                G    DG+  FT     G+ DR K+  Y
Sbjct: 121 PLIVKQKSVDLENHAGSWPEIGIPVEELGFSGGGADGDGSGSFTG---GGNCDRRKLATY 180

Query: 181 YEELLKLNPNDALLLRNYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWES 240
           YEE+LKLNP D+LLLRNYGKFLHEVEKD +R+EE Y RAILA+P DGE+L+LY KL+WE+
Sbjct: 181 YEEMLKLNPGDSLLLRNYGKFLHEVEKDAIRAEEYYGRAILASPGDGEVLSLYAKLIWET 240

Query: 241 HKDKQRAEYYFDRAVRASPNDCLVIGYYAYFLWQIEDDEEQEAAEVWPAAMVAAF 271
            +D+ RA+ YFD+AV ASPNDC+V+G YA F+W+ E++EE+         MV AF
Sbjct: 241 ERDQDRAQCYFDQAVSASPNDCMVMGSYAQFMWEAEEEEEENEVIKIEGTMVEAF 283

[Close]
BLAST of Cp4.1LG05g00170 vs. NCBI nr
Match: gi|728838575|gb|KHG18018.1| (Adenosine monophosphate-protein transferase FICD [Gossypium arboreum])

HSP 1 Score: 207.6 bits (527), Expect = 2.7e-50
Identity = 130/279 (46.59%), Postives = 169/279 (60.57%), Query Frame = 1 

Query: 1   MKSALLRTVSIPVIWPS--GTASSSFSNYRPLHGVFTGHKS--SVSSPKISLHFEMNNPR 60
           MK+A+LR  S+PV   +  G+   S S       VF+G +S  S+SSP +SLHF M+  +
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFSGERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GRNSSG-IRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDS 120
              S   IRRA SE+DI +S   V          GSR  T      IPEEE+++  E D 
Sbjct: 61  PMESRAQIRRALSETDIIKSETRVPG--------GSRCFTAG----IPEEEYVSDYEIDG 120

Query: 121 DSMEDDSGCLD----NGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLR 180
               +    ++    +G G   G +   D   D   D+ K+G YY E+LKLNP D LLLR
Sbjct: 121 GCRTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKGKMGDYYREILKLNPGDPLLLR 180

Query: 181 NYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVR 240
           NYG+FLHEVEKD  R+EE Y RAILA+P DGE+L+LYG L+WE H+D+ RA+ YFDRAV 
Sbjct: 181 NYGRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGNLIWERHRDESRAKSYFDRAVT 240

Query: 241 ASPNDCLVIGYYAYFLWQIEDDEEQEAAEVWPAAMVAAF 271
           ASP+DC+V+G YA FLW  E+D+E+E       AMVAAF
Sbjct: 241 ASPDDCMVLGSYANFLWDAEEDDEEEVD--MSKAMVAAF 265

[Close]
BLAST of Cp4.1LG05g00170 vs. NCBI nr
Match: gi|823151699|ref|XP_012475677.1| (PREDICTED: uncharacterized protein LOC105791919 [Gossypium raimondii])

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49
Identity = 129/279 (46.24%), Postives = 168/279 (60.22%), Query Frame = 1 

Query: 1   MKSALLRTVSIPVIWPS--GTASSSFSNYRPLHGVFTGHKS--SVSSPKISLHFEMNNPR 60
           MK+A+LR  S+PV   +  G+   S S       VF   +S  S+SSP +SLHF M+  +
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFPVERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GRNSSG-IRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDS 120
            + S   IRRA SE+DI +S   V          GSR  T      IPEEE+++  E D 
Sbjct: 61  PKESRAQIRRALSETDIIKSETRVPG--------GSRCFTAG----IPEEEYVSDYEIDG 120

Query: 121 DSMEDDSGCLD----NGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLR 180
               +    ++    +G G   G +   D   D   D+ K+G YY E+LKLNP D LLLR
Sbjct: 121 GFRTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKRKMGDYYREMLKLNPGDPLLLR 180

Query: 181 NYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVR 240
           NYG+FLHEVEKD  R+EE Y RAILA+P DGE+L+LYG L+WE H+D+ RA+ YFDRAV 
Sbjct: 181 NYGRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGDLIWERHRDESRAKSYFDRAVT 240

Query: 241 ASPNDCLVIGYYAYFLWQIEDDEEQEAAEVWPAAMVAAF 271
           ASP+DC+V+G YA FLW  E+D+E+E       AMVAAF
Sbjct: 241 ASPDDCMVLGSYANFLWDAEEDDEEEVE--MSKAMVAAF 265

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g00170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g00170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH65_CUCSA3.5e-8161.96Uncharacterized protein OS=Cucumis sativus GN=Csa_3G901150 PE=4 SV=1[more]
A0A0B0NU07_GOSAR1.9e-5046.59Adenosine monophosphate-protein transferase FICD OS=Gossypium arboreum GN=F383_2... [more]
A0A0D2QZR9_GOSRA2.1e-4946.24Uncharacterized protein OS=Gossypium raimondii GN=B456_004G183900 PE=4 SV=1[more]
A0A061G302_THECC2.3e-4843.56Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao G... [more]
B9SNT4_RICCO2.0e-4744.72Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278170 PE=4 SV=1[more]
BLAST of Cp4.1LG05g00170 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17940.13.8e-4238.60 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G20190.13.7e-2947.86 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G80130.11.7e-2646.09 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G32340.11.4e-2544.44 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G04530.11.3e-2144.35 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG05g00170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449437232|ref|XP_004136396.1|5.1e-8161.96PREDICTED: uncharacterized protein LOC101218835 [Cucumis sativus][more]
gi|659132057|ref|XP_008465993.1|5.6e-8062.59PREDICTED: uncharacterized protein LOC103503559 [Cucumis melo][more]
gi|225427169|ref|XP_002277674.1|1.9e-5145.08PREDICTED: uncharacterized protein LOC100245547 [Vitis vinifera][more]
gi|728838575|gb|KHG18018.1|2.7e-5046.59Adenosine monophosphate-protein transferase FICD [Gossypium arboreum][more]
gi|823151699|ref|XP_012475677.1|3.0e-4946.24PREDICTED: uncharacterized protein LOC105791919 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g00170.1Cp4.1LG05g00170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 154..255
score: 6.7
IPR011990Tetratricopeptide-like helical domainunknownSSF48452TPR-likecoord: 147..255
score: 1.93
IPR013026Tetratricopeptide repeat-containing domainPROFILEPS50293TPR_REGIONcoord: 155..236
score: 12
NoneNo IPR availablePANTHERPTHR26312FAMILY NOT NAMEDcoord: 91..260
score: 8.4
NoneNo IPR availablePANTHERPTHR26312:SF53CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEINcoord: 91..260
score: 8.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g00170Cucsa.312970Cucumber (Gy14) v1cgycpeB0826
Cp4.1LG05g00170CmaCh19G002270Cucurbita maxima (Rimu)cmacpeB543
Cp4.1LG05g00170CmaCh02G016230Cucurbita maxima (Rimu)cmacpeB647
Cp4.1LG05g00170CmoCh19G002410Cucurbita moschata (Rifu)cmocpeB498
Cp4.1LG05g00170CmoCh02G016680Cucurbita moschata (Rifu)cmocpeB596
Cp4.1LG05g00170Csa3G901150Cucumber (Chinese Long) v2cpecuB717
Cp4.1LG05g00170MELO3C003424Melon (DHL92) v3.5.1cpemeB689
Cp4.1LG05g00170CSPI03G46560Wild cucumber (PI 183967)cpecpiB719
Cp4.1LG05g00170LsiUNG000260Bottle gourd (USVL1VR-Ls)cpelsiB576
Cp4.1LG05g00170MELO3C003424.2Melon (DHL92) v3.6.1cpemedB821
Cp4.1LG05g00170CsaV3_3G049010Cucumber (Chinese Long) v3cpecucB0894
Cp4.1LG05g00170Bhi05G000312Wax gourdcpewgoB0930
Cp4.1LG05g00170CsGy3G044000Cucumber (Gy14) v2cgybcpeB425
Cp4.1LG05g00170Carg24530Silver-seed gourdcarcpeB1346
Cp4.1LG05g00170Carg08849Silver-seed gourdcarcpeB1099
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g00170Cp4.1LG15g02090Cucurbita pepo (Zucchini)cpecpeB273
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g00170Cucumber (Gy14) v2cgybcpeB426
Cp4.1LG05g00170Melon (DHL92) v3.6.1cpemedB830
Cp4.1LG05g00170Silver-seed gourdcarcpeB1336
Cp4.1LG05g00170Cucumber (Chinese Long) v3cpecucB0895
Cp4.1LG05g00170Cucurbita pepo (Zucchini)cpecpeB248
Cp4.1LG05g00170Cucurbita pepo (Zucchini)cpecpeB509
Cp4.1LG05g00170Cucumber (Gy14) v1cgycpeB0853
Cp4.1LG05g00170Cucurbita maxima (Rimu)cmacpeB360
Cp4.1LG05g00170Cucurbita maxima (Rimu)cmacpeB842
Cp4.1LG05g00170Cucurbita moschata (Rifu)cmocpeB324
Cp4.1LG05g00170Cucurbita moschata (Rifu)cmocpeB790
Cp4.1LG05g00170Wild cucumber (PI 183967)cpecpiB720
Cp4.1LG05g00170Cucumber (Chinese Long) v2cpecuB718
Cp4.1LG05g00170Bottle gourd (USVL1VR-Ls)cpelsiB630
Cp4.1LG05g00170Watermelon (Charleston Gray)cpewcgB625
Cp4.1LG05g00170Watermelon (Charleston Gray)cpewcgB631
Cp4.1LG05g00170Watermelon (97103) v1cpewmB684
Cp4.1LG05g00170Watermelon (97103) v1cpewmB692
Cp4.1LG05g00170Melon (DHL92) v3.5.1cpemeB700