Carg08849 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08849
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tetratricopeptide-like helical
Location	Cucurbita_argyrosperma_scaffold_020 : 392338 .. 393542 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACTGTTCCATTTCACATCCCTCGCAAACTTGCAGCTATGAAATCGGCTCTCCTCAGAACCGTCTCCATTCCCGTCATCTGGCCGTCCGGCACCGCTTCGTCATCCTTCTCCAATTACAGACCGTTGCATGGAGTTTTCACCGGCCACAAGAGTTCCGTTTCGTCTCCAAAGATCTCTCTGCATTTTGAGATGAATAATCCTAGAGGAAGGAATTCGAGTGGTATACGAAGGGCGTCATCGGAGAGCGACATCTCTCGATCGCTGCATGAGGTTTCGAATCCGTATGATCAATTTGGAGGAGTCGGATCTCGATCTCGGACTCGATCCTCTCATTCTGAAATACCAGAGGAGGAGTTTTTGAACCAGGATGAATTTGACAGTGATTCGATGGAGGACGACTCTGGATGTTTGGATTCCGGAATCGGCTGCAGCGATGGCGCTGAATTTTTTACAGATACGTTTTATGACGGAAGTAATGACCGTAATAAGATCGGAGCGTACTACGAAGAGTTGCTGAAGTTGAACCCTAACGACGCTCTGTTACTGAGAAACTATGGAAAATTCTTACATGAGGTAATTGAATATTCGAATTGTCAATTTGAAAGTCTCTTTCAATCTGAAATCGAATGAAATCGGCTCTTACATTTTACTTTGTTTGATTTGATCCATCGTGTAAAGGTGGAGAAAGATCATGTGAGATCAGAGGAATGCTACAGCAGAGCAATATTGGCGAATCCAAGCGACGGAGAGTTGTTGGCTTTGTATGGAAAACTGGTGTGGGAGTCTCACAAAGACAAGCAAAGAGCTGAATATTACTTCGACCGCGCCGTGCGTGCCTCCCCTAACGACTGGTAACTTCCGATCTCTGAATCTAGCAATGTAGCCCTAAATTGTCCGAATTCAATGGCTCTGGTTCTGAATGATTCAGTTTGTGTGTGTAGTTTGGTGATTGGTTATTACGCCTATTTCTTGTGGCAAATTGAAGATGATGAAGAAGAAGAGGCGGCGGAGGTATGGCCGGCGGCTATGGTAGCGGCGTTTTAATTGATCAAATGGATTGGGAGACGTCAGTTTTGGCAAAATAGGAGAGGAAGAGGCAAGAAAGAATGGCATGCGATTCCTGAATGGGCATTTGAAGAGGGAACAAAGATTAGCATCCAGGTGCTCTCAATATCTTATTTTATATTTATATTTATATTTA

mRNA sequence

AAAAACTGTTCCATTTCACATCCCTCGCAAACTTGCAGCTATGAAATCGGCTCTCCTCAGAACCGTCTCCATTCCCGTCATCTGGCCGTCCGGCACCGCTTCGTCATCCTTCTCCAATTACAGACCGTTGCATGGAGTTTTCACCGGCCACAAGAGTTCCGTTTCGTCTCCAAAGATCTCTCTGCATTTTGAGATGAATAATCCTAGAGGAAGGAATTCGAGTGGTATACGAAGGGCGTCATCGGAGAGCGACATCTCTCGATCGCTGCATGAGGTTTCGAATCCGTATGATCAATTTGGAGGAGTCGGATCTCGATCTCGGACTCGATCCTCTCATTCTGAAATACCAGAGGAGGAGTTTTTGAACCAGGATGAATTTGACAGTGATTCGATGGAGGACGACTCTGGATGTTTGGATTCCGGAATCGGCTGCAGCGATGGCGCTGAATTTTTTACAGATACGTTTTATGACGGAAGTAATGACCGTAATAAGATCGGAGCGTACTACGAAGAGTTGCTGAAGTTGAACCCTAACGACGCTCTGTTACTGAGAAACTATGGAAAATTCTTACATGAGGTGGAGAAAGATCATGTGAGATCAGAGGAATGCTACAGCAGAGCAATATTGGCGAATCCAAGCGACGGAGAGTTGTTGGCTTTGTATGGAAAACTGGTGTGGGAGTCTCACAAAGACAAGCAAAGAGCTGAATATTACTTCGACCGCGCCGTGCGTGCCTCCCCTAACGACTGTTTGGTGATTGGTTATTACGCCTATTTCTTGTGGCAAATTGAAGATGATGAAGAAGAAGAGGCGGCGGAGGTATGGCCGGCGGCTATGGTAGCGGCGTTTTAATTGATCAAATGGATTGGGAGACGTCAGTTTTGGCAAAATAGGAGAGGAAGAGGCAAGAAAGAATGGCATGCGATTCCTGAATGGGCATTTGAAGAGGGAACAAAGATTAGCATCCAGGTGCTCTCAATATCTTATTTTATATTTATATTTATATTTA

Coding sequence (CDS)

ATGAAATCGGCTCTCCTCAGAACCGTCTCCATTCCCGTCATCTGGCCGTCCGGCACCGCTTCGTCATCCTTCTCCAATTACAGACCGTTGCATGGAGTTTTCACCGGCCACAAGAGTTCCGTTTCGTCTCCAAAGATCTCTCTGCATTTTGAGATGAATAATCCTAGAGGAAGGAATTCGAGTGGTATACGAAGGGCGTCATCGGAGAGCGACATCTCTCGATCGCTGCATGAGGTTTCGAATCCGTATGATCAATTTGGAGGAGTCGGATCTCGATCTCGGACTCGATCCTCTCATTCTGAAATACCAGAGGAGGAGTTTTTGAACCAGGATGAATTTGACAGTGATTCGATGGAGGACGACTCTGGATGTTTGGATTCCGGAATCGGCTGCAGCGATGGCGCTGAATTTTTTACAGATACGTTTTATGACGGAAGTAATGACCGTAATAAGATCGGAGCGTACTACGAAGAGTTGCTGAAGTTGAACCCTAACGACGCTCTGTTACTGAGAAACTATGGAAAATTCTTACATGAGGTGGAGAAAGATCATGTGAGATCAGAGGAATGCTACAGCAGAGCAATATTGGCGAATCCAAGCGACGGAGAGTTGTTGGCTTTGTATGGAAAACTGGTGTGGGAGTCTCACAAAGACAAGCAAAGAGCTGAATATTACTTCGACCGCGCCGTGCGTGCCTCCCCTAACGACTGTTTGGTGATTGGTTATTACGCCTATTTCTTGTGGCAAATTGAAGATGATGAAGAAGAAGAGGCGGCGGAGGTATGGCCGGCGGCTATGGTAGCGGCGTTTTAA

Protein sequence

MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNSSGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMEDDSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVIGYYAYFLWQIEDDEEEEAAEVWPAAMVAAF

Homology

[Close]

BLAST of Carg08849 vs. NCBI nr
Match: XP_022930988.1 (uncharacterized protein LOC111437316 [Cucurbita moschata])

HSP 1 Score: 372.5 bits (955), Expect = 1.2e-99
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60
           MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120
           SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180
           DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV
Sbjct: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

Query: 181 EKDHVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           EKDHVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 EKDHVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXEAAEVWPAAMVAAF 271
           XXXXXXXXXXXXXXXXEAAEVWPAAMVAAF
Sbjct: 241 XXXXXXXXXXXXXXXXEAAEVWPAAMVAAF 270

[Close]

BLAST of Carg08849 vs. NCBI nr
Match: XP_023532088.1 (uncharacterized protein LOC111794359 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.5 bits (937), Expect = 1.5e-97
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60
           MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120
           SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180
           DSGCLD+GIGCSDGAEFFTD FYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV
Sbjct: 121 DSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

Query: 181 EKDHV 186
           EKDHV
Sbjct: 181 EKDHV 185

[Close]

BLAST of Carg08849 vs. NCBI nr
Match: XP_022995940.1 (uncharacterized protein LOC111491305 [Cucurbita maxima])

HSP 1 Score: 358.2 bits (918), Expect = 2.4e-95
Identity = 265/270 (98.15%), Postives = 266/270 (98.52%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60
           MKSAL RTVSIPVI PSGTASSSFSNYRPLHGVFTGHKSSVSSPKISL FEMNNPRGRNS
Sbjct: 1   MKSALFRTVSIPVISPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLLFEMNNPRGRNS 60

Query: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120
           SGIRR SSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSME+
Sbjct: 61  SGIRRVSSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMEE 120

Query: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180
           DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV
Sbjct: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

Query: 181 EKDHVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           EKDHVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 EKDHVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXEAAEVWPAAMVAAF 271
           XXXXXXXXXXXXXXXXEAAEVWPAAMVAAF
Sbjct: 241 XXXXXXXXXXXXXXXXEAAEVWPAAMVAAF 270

[Close]

BLAST of Carg08849 vs. NCBI nr
Match: XP_022963763.1 (uncharacterized protein LOC111463957 [Cucurbita moschata])

HSP 1 Score: 225.7 bits (574), Expect = 1.9e-55
Identity = 122/181 (67.40%), Postives = 146/181 (80.66%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60
           M+SAL+RTVS+PV+  +  ASSSFSNY+PL+G  +G  SS+SSPKISLHFE+N+ RG+N 
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120
           SGIRRA+SESDISRSLHEVS+PYDQFGG   RSR  S  SEIPE+EFLNQDEF  DS   
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGF--RSRYWSVPSEIPEDEFLNQDEFHRDSFA- 120

Query: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180
           D+  L+SGI   DG +F  D F DGS++ +KI AYYEE+LK NP+DAL+LRNYGKFLHEV
Sbjct: 121 DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEV 178

Query: 181 E 182
           E
Sbjct: 181 E 178

[Close]

BLAST of Carg08849 vs. NCBI nr
Match: XP_023554672.1 (uncharacterized protein LOC111811867 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.9 bits (572), Expect = 3.2e-55
Identity = 122/182 (67.03%), Postives = 146/182 (80.22%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60
           M+SAL+RTVS+PV+  +  ASSSFSNY+PL+G  +G  SS+SSPKISLHFE+N+ RG+N 
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120
           SGIRRA+SESDISRSLHEVS+PYDQFGG   RSR  S  SEIPE+EFLNQDEF   S   
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGF--RSRYWSVPSEIPEDEFLNQDEFHRGSFA- 120

Query: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180
           D+  L+SGI   DG +F  D F DGS++ +KI AYYEE+LK NP+DAL+LRNYGKFLHEV
Sbjct: 121 DTEFLNSGIVSGDGGDFVADKFTDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEV 179

Query: 181 EK 183
           EK
Sbjct: 181 EK 179

[Close]

BLAST of Carg08849 vs. TAIR10
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-10
Identity = 66/203 (32.51%), Postives = 95/203 (46.80%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWP---SGTASSSFSNYRPLHGV--FTGHKSSVSSPKISLHFEMNNP 60
           MKS L+RT S+PV+     SG +S   +     + V   + +    +  KIS+  + N  
Sbjct: 1   MKSLLMRTGSMPVLQNRLISGGSSRKMTPISRTNSVESLSSYGERFAGGKISIEVKAN-- 60

Query: 61  RGRNSSGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDS 120
                 G+RR  SESD+ RS   +         VGS    + S + IPE++   ++E   
Sbjct: 61  -----VGMRRVLSESDVIRSERMLKR-------VGS----KPSPARIPEDDEAGEEEI-- 120

Query: 121 DSMEDDSGCLDSGIGCSDGAEFFT---------------DTFYDGSNDRNKIGAYYEELL 180
               D  G + SG G     + FT                       D++KIG YY E+L
Sbjct: 121 -RFADGWGSMISG-GLPVEEKCFTGGGXXXXXXXXXXXXXXXXXXXEDKSKIGDYYREML 180

Query: 181 KLNPNDALLLRNYGKFLHEVEKD 184
           + NPN++LLL NYGKFL+EVEKD
Sbjct: 181 RSNPNNSLLLMNYGKFLYEVEKD 181

[Close]

BLAST of Carg08849 vs. TrEMBL
Match: tr|A0A0A0LH65|A0A0A0LH65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901150 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.7e-42
Identity = 112/186 (60.22%), Postives = 135/186 (72.58%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYR-PLHGVFTGHKSSVSSPK-ISLHFEMNNPRGR 60
           MKSALLRT S+P++ P+ T SSSFSN + PL+G+F+ H SS SSP+ ISLH+   N    
Sbjct: 1   MKSALLRTGSVPLLSPTTTPSSSFSNNKQPLYGLFSSHNSSTSSPRSISLHYCTRN---- 60

Query: 61  NSSGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSH-SEIPEEEFLNQDE---FD 120
           +S+ IRRA+SESDI RSLH+VSN  DQF G+ SRSR+RSS  S+IPEEEFLN+D    FD
Sbjct: 61  HSNHIRRAASESDIVRSLHQVSNTSDQFSGLASRSRSRSSFPSKIPEEEFLNEDHDQIFD 120

Query: 121 SDSMEDDSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYG 180
            DSME+D   L+S IG                NDR+KIGAYYE +LKLNP+DALLLRNYG
Sbjct: 121 GDSMEEDKVFLNSPIGI---------------NDRSKIGAYYEHMLKLNPSDALLLRNYG 167

[Close]

BLAST of Carg08849 vs. TrEMBL
Match: tr|A0A1S3CQ68|A0A1S3CQ68_CUCME (uncharacterized protein LOC103503559 OS=Cucumis melo OX=3656 GN=LOC103503559 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.0e-41
Identity = 106/181 (58.56%), Postives = 130/181 (71.82%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60
           MKSALLRT S+P++ P+ TAS   +N +PL+GV + H SS SSP+ISLH   N     NS
Sbjct: 1   MKSALLRTGSVPLLSPTTTAS---NNKQPLYGVLSCHNSSASSPRISLHCTRN-----NS 60

Query: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQ-DEFDSDSME 120
           + IRRA+SESDI RSLHEVSN  DQF G+ SRS +RS  S+IPEEEF+++ D+FDSDSME
Sbjct: 61  NRIRRAASESDIVRSLHEVSNTSDQFSGLASRSLSRSFPSKIPEEEFIDEDDQFDSDSME 120

Query: 121 DDSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180
           +D   L+  +G                NDR+KIGAYYE +LKLNP+DALLLRNYGKFLHE
Sbjct: 121 EDKEYLNYRVGV---------------NDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHE 158

[Close]

BLAST of Carg08849 vs. TrEMBL
Match: tr|A0A2P4N573|A0A2P4N573_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_26239 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.4e-20
Identity = 79/200 (39.50%), Postives = 109/200 (54.50%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60
           MK+ L+RT S+P++ P     + + N   + GVFTG KSSV+SPK+SLH + N   GR  
Sbjct: 1   MKAVLIRTGSVPLLSPGSPRVTLYLN-DSVPGVFTGEKSSVTSPKVSLHLDTN---GRRD 60

Query: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120
            G+RRA SE+D+ RS   +S    +  G GS    RS  S IPEE +++  E  S  ++ 
Sbjct: 61  GGMRRAFSETDMIRSESGLS----RLSGAGS----RSFPSVIPEEVYVSDSELGSPGLKT 120

Query: 121 DSGCLDSGIGCS-DGAEF-------------FTDTFYDGSNDRNKIGAYYEELLKLNPND 180
           +   +   IG   +  EF                       ++ K+ AYY E++K NP D
Sbjct: 121 NGAGVWPEIGIPVEELEFSXXXXXXXXXXXXXXXXXXXXXXEKRKMAAYYLEMVKSNPGD 180

Query: 181 ALLLRNYGKFLHEVEKDHVR 187
           +LLLRNY KFLHEVEKD VR
Sbjct: 181 SLLLRNYAKFLHEVEKDTVR 188

[Close]

BLAST of Carg08849 vs. TrEMBL
Match: tr|A0A0B0NU07|A0A0B0NU07_GOSAR (Adenosine monophosphate-protein transferase FICD OS=Gossypium arboreum OX=29729 GN=F383_21388 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 79/192 (41.15%), Postives = 105/192 (54.69%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWPS--GTASSSFSNYRPLHGVFTGHKS--SVSSPKISLHFEMNNPR 60
           MK+A+LR  S+PV   +  G+   S S       VF+G +S  S+SSP +SLHF M+  +
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFSGERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GRNS-SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDS 120
              S + IRRA SE+DI +S   V          GSR  T    + IPEEE+++  E D 
Sbjct: 61  PMESRAQIRRALSETDIIKSETRVPG--------GSRCFT----AGIPEEEYVSDYEIDG 120

Query: 121 DSMEDDSGCLD----SGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLR 180
               +    ++    SG G   G +   D   D   D+ K+G YY E+LKLNP D LLLR
Sbjct: 121 GCRTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKGKMGDYYREILKLNPGDPLLLR 180

Query: 181 NYGKFLHEVEKD 184
           NYG+FLHEVEKD
Sbjct: 181 NYGRFLHEVEKD 180

[Close]

BLAST of Carg08849 vs. TrEMBL
Match: tr|A0A1U8KS86|A0A1U8KS86_GOSHI (uncharacterized protein LOC107918509 OS=Gossypium hirsutum OX=3635 GN=LOC107918509 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18
Identity = 79/192 (41.15%), Postives = 105/192 (54.69%), Query Frame = 0


Query: 1   MKSALLRTVSIPVIWPS--GTASSSFSNYRPLHGVFTGHKS--SVSSPKISLHFEMNNPR 60
           MK+A+LR  S+PV   +  G+   S S       VF+G +S  S+SSP +SLHF M+  +
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFSGERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GRNS-SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDS 120
              S + IRRA SE+DI +S   V          GSR  T    + IPEEE+++  E D 
Sbjct: 61  PMESRAQIRRALSETDIIKSETRVPG--------GSRCFT----AGIPEEEYVSDYEIDG 120

Query: 121 DSMEDDSGCLD----SGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLR 180
               +    ++    SG G   G +   D   D   D+ K+G YY E+LKLNP D LLLR
Sbjct: 121 GFRTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKGKMGDYYREMLKLNPGDPLLLR 180

Query: 181 NYGKFLHEVEKD 184
           NYG+FLHEVEKD
Sbjct: 181 NYGRFLHEVEKD 180

The following BLAST results are available for this feature:

BLAST of Carg08849 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930988.1	1.2e-99	100.00	uncharacterized protein LOC111437316 [Cucurbita moschata]	[more]
XP_023532088.1	1.5e-97	98.92	uncharacterized protein LOC111794359 [Cucurbita pepo subsp. pepo]	[more]
XP_022995940.1	2.4e-95	98.15	uncharacterized protein LOC111491305 [Cucurbita maxima]	[more]
XP_022963763.1	1.9e-55	67.40	uncharacterized protein LOC111463957 [Cucurbita moschata]	[more]
XP_023554672.1	3.2e-55	67.03	uncharacterized protein LOC111811867 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg08849 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17940.1	1.0e-10	32.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg08849 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08849 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LH65\|A0A0A0LH65_CUCSA	2.7e-42	60.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901150 PE=4 SV=1	[more]
tr\|A0A1S3CQ68\|A0A1S3CQ68_CUCME	3.0e-41	58.56	uncharacterized protein LOC103503559 OS=Cucumis melo OX=3656 GN=LOC103503559 PE=...	[more]
tr\|A0A2P4N573\|A0A2P4N573_QUESU	6.4e-20	39.50	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_26239 PE=4 SV=1	[more]
tr\|A0A0B0NU07\|A0A0B0NU07_GOSAR	1.6e-18	41.15	Adenosine monophosphate-protein transferase FICD OS=Gossypium arboreum OX=29729 ...	[more]
tr\|A0A1U8KS86\|A0A1U8KS86_GOSHI	2.1e-18	41.15	uncharacterized protein LOC107918509 OS=Gossypium hirsutum OX=3635 GN=LOC1079185...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08849-RA	Carg08849-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 135..249 e-value: 1.2E-13 score: 52.7
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 149..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..121
None	No IPR available	PANTHER	PTHR26312:SF53	SUBFAMILY NOT NAMED	coord: 36..260
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 36..260
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 155..236 score: 12.595

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08849	Cla016219	Watermelon (97103) v1	carwmB0776
Carg08849	Csa3G901150	Cucumber (Chinese Long) v2	carcuB0797
Carg08849	MELO3C003424	Melon (DHL92) v3.5.1	carmeB0771
Carg08849	ClCG09G011810	Watermelon (Charleston Gray)	carwcgB0753
Carg08849	CSPI03G46560	Wild cucumber (PI 183967)	carcpiB0817
Carg08849	Cucsa.312970	Cucumber (Gy14) v1	carcgyB0890
Carg08849	CmaCh02G016230	Cucurbita maxima (Rimu)	carcmaB1084
Carg08849	CmaCh19G002270	Cucurbita maxima (Rimu)	carcmaB1082
Carg08849	CmoCh02G016680	Cucurbita moschata (Rifu)	carcmoB1057
Carg08849	CmoCh19G002410	Cucurbita moschata (Rifu)	carcmoB1055
Carg08849	LsiUNG000260	Bottle gourd (USVL1VR-Ls)	carlsiB712
Carg08849	Cp4.1LG15g02090	Cucurbita pepo (Zucchini)	carcpeB1094
Carg08849	Cp4.1LG05g00170	Cucurbita pepo (Zucchini)	carcpeB1099
Carg08849	CsGy3G044000	Cucumber (Gy14) v2	carcgybB0774
Carg08849	MELO3C003424.2	Melon (DHL92) v3.6.1	carmedB0784
Carg08849	CsaV3_3G049010	Cucumber (Chinese Long) v3	carcucB0820
Carg08849	Cla97C09G174580	Watermelon (97103) v2	carwmbB0823
Carg08849	Bhi05G000312	Wax gourd	carwgoB0918

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08849	Carg24530	Silver-seed gourd	carcarB612

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08849	Silver-seed gourd	carcarB611
Carg08849	Cucumber (Gy14) v2	carcgybB0775
Carg08849	Cucumber (Gy14) v1	carcgyB0891
Carg08849	Cucurbita maxima (Rimu)	carcmaB1077
Carg08849	Cucurbita maxima (Rimu)	carcmaB1088
Carg08849	Cucurbita moschata (Rifu)	carcmoB1050
Carg08849	Cucurbita moschata (Rifu)	carcmoB1060
Carg08849	Cucurbita pepo (Zucchini)	carcpeB1089
Carg08849	Cucurbita pepo (Zucchini)	carcpeB1100
Carg08849	Wild cucumber (PI 183967)	carcpiB0818
Carg08849	Cucumber (Chinese Long) v2	carcuB0798
Carg08849	Cucumber (Chinese Long) v3	carcucB0821
Carg08849	Bottle gourd (USVL1VR-Ls)	carlsiB721
Carg08849	Melon (DHL92) v3.5.1	carmeB0779
Carg08849	Melon (DHL92) v3.6.1	carmedB0793
Carg08849	Watermelon (Charleston Gray)	carwcgB0754
Carg08849	Watermelon (97103) v1	carwmB0775
Carg08849	Watermelon (97103) v1	carwmB0777
Carg08849	Watermelon (97103) v2	carwmbB0816
Carg08849	Watermelon (97103) v2	carwmbB0822