CmoCh19G002410 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G002410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Location	Cmo_Chr19 : 1706439 .. 1707762 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGAAAAACCCAAAAAGGGAAAACGAAAGAAAACTCTGCCATTTCAAAACCTTCGCAAATTGCAGCTATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAACAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATATCGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGCGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTAATCGAAGTCTAGAATTATCAAATTGAAAGTCTGCTTTGATCTGAAATCCTGAAATCCTGAAATCTAATGGAATATCACACTTTAATTTCTTTGATTTGATTTGATTGATGATTTAAAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGGAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGGTAATTTTCGATATCTGGATCGAGCAGTTTAGCCCTAATTTCATGAACTGGAAGACTCTGAATGTTTGAATTTGTTTGTGAAGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCAGCTCTGGTTGCGGCGTTTTAATGGAAGAAATTGGTTTGAAGGAGGTTTCGCGGATATAGGAGAGGAAGAATTGAGGGAGAAGTGGCACGTGATTTGTGGACGTGCCATTTCAGGAGGAAATAAATTGCACGTGACTTGTTGGTGTAATGTAAAGTCCCATAATAATAAAAAAAAATAACTCTGATTTCTATTTTAAAATATTCTATTTATTAGGAAAATTTCGACGTCAAATCCTAAATTACCACCAAATATTTTAGTTGGGG

mRNA sequence

AACGAAAAACCCAAAAAGGGAAAACGAAAGAAAACTCTGCCATTTCAAAACCTTCGCAAATTGCAGCTATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAACAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATATCGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGCGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGGAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCAGCTCTGGTTGCGGCGTTTTAATGGAAGAAATTGGTTTGAAGGAGGTTTCGCGGATATAGGAGAGGAAGAATTGAGGGAGAAGTGGCACGTGATTTGTGGACGTGCCATTTCAGGAGGAAATAAATTGCACGTGACTTGTTGGTGTAATGTAAAGTCCCATAATAATAAAAAAAAATAACTCTGATTTCTATTTTAAAATATTCTATTTATTAGGAAAATTTCGACGTCAAATCCTAAATTACCACCAAATATTTTAGTTGGGG

Coding sequence (CDS)

ATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAACAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATATCGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGCGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGGAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCAGCTCTGGTTGCGGCGTTTTAA

Homology

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BLAST of CmoCh19G002410 vs. TrEMBL
Match: A0A0A0LH65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G901150 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 9.3e-74
Identity = 175/279 (62.72%), Postives = 195/279 (69.89%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYK-PLYGALSGQNSSISSPK-ISLHF-EINHRRG 60
           M+SAL+RT SVP+LS     SSSFSN K PLYG  S  NSS SSP+ ISLH+   NH   
Sbjct: 1   MKSALLRTGSVPLLSPTTTPSSSFSNNKQPLYGLFSSHNSSTSSPRSISLHYCTRNHS-- 60

Query: 61  KNWSGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWS---VPSEIPEDEFLNQDE---F 120
              + IRRAASESDI RSLH+VS+  DQF G  SR  S    PS+IPE+EFLN+D    F
Sbjct: 61  ---NHIRRAASESDIVRSLHQVSNTSDQFSGLASRSRSRSSFPSKIPEEEFLNEDHDQIF 120

Query: 121 HRDSFA-DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNY 180
             DS   D  FLNS I               G ++ SKI AYYE MLK NPSDAL+LRNY
Sbjct: 121 DGDSMEEDKVFLNSPI---------------GINDRSKIGAYYEHMLKLNPSDALLLRNY 180

Query: 181 GKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCAS 240
           GKFLHEV  DSKRAEECYSRAILASP DGELLALYGKLVWDTQRDK+RAQYYFDRAV AS
Sbjct: 181 GKFLHEVANDSKRAEECYSRAILASPTDGELLALYGKLVWDTQRDKQRAQYYFDRAVYAS 240

Query: 241 PNDCLVIGYYAHFLWLVEDDEEEATAVAPAPAPALVAAF 270
           PNDCLV G+YAHF+W VE+D  EA A A   A  +V A+
Sbjct: 241 PNDCLVTGHYAHFMWEVEED--EAAASAEDSAAGMVRAY 257

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BLAST of CmoCh19G002410 vs. TrEMBL
Match: B9SNT4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278170 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.9e-48
Identity = 131/279 (46.95%), Postives = 166/279 (59.50%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASS--SFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGK 60
           M+S L+RT S+   +     S   S S    +   LSG+ S+ +SPK SLH EIN R  K
Sbjct: 1   MKSLLLRTGSIQAHAPVTCGSPKLSLSRRNSISSVLSGEKSTANSPKFSLHLEINSR--K 60

Query: 61  NWSGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFAD 120
             + IRRA SE+DI RS  E      + G       S P+ I E+E+ N      ++   
Sbjct: 61  RDTLIRRALSETDIIRS--ETEEMLSRAGSM-----SFPARILEEEYSNLTYIWPENGIP 120

Query: 121 TEFLNSGIVSGDGGDFVADKFSDG---------SSESSKIRAYYEEMLKSNPSDALILRN 180
            E L  G  SG  G F   K S G         S + SKI  YY EMLKSNP+D+L+LRN
Sbjct: 121 LEEL--GFSSGGDG-FGKGKNSGGGNGGVDGNSSDDLSKIGDYYTEMLKSNPNDSLLLRN 180

Query: 181 YGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCA 240
           YGKFLHEVE D +RAEE Y RAILA P DGE+L+LYGKL+WD QRD  RA+ YFD+AV A
Sbjct: 181 YGKFLHEVEGDMERAEEYYGRAILAGPGDGEVLSLYGKLIWDRQRDGERAKAYFDQAVSA 240

Query: 241 SPNDCLVIGYYAHFLWLVEDDEEEATAVAPAPAPALVAA 269
           +P+DC+V+G YAHF+W  E++EEE        +PA+V A
Sbjct: 241 APHDCMVMGSYAHFMWEAEEEEEEEINSKAQISPAMVVA 267

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BLAST of CmoCh19G002410 vs. TrEMBL
Match: A0A067KMJ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13620 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.1e-47
Identity = 125/277 (45.13%), Postives = 165/277 (59.57%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+S L +T S+ +L        S S      G  SG+ +++SSPKIS+H EIN +R    
Sbjct: 1   MKSLLSKTGSISILPEP--PKISISRRDSFNGIFSGEKNTVSSPKISMHLEINRQRD--- 60

Query: 61  SGIRRAASESDISRSLHEVSS-------PYDQFGGFRSRYWSVPSEIPEDEF-LNQDEFH 120
           + IRRA SESD+ +S   V S       P ++     SR +S     P +   L +  F+
Sbjct: 61  TPIRRALSESDLMKSEAHVFSRSFPAIIPEEEHHDVDSRNFSHTGIWPNNGIPLEELGFN 120

Query: 121 RDSFADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGK 180
              F   +    G     GGD    +FS    + SK+  YY+EMLKSNPSD+L+LRNY K
Sbjct: 121 GGGFGKGKKFGGG---KGGGDRHNREFSGEGFDVSKMSDYYKEMLKSNPSDSLLLRNYAK 180

Query: 181 FLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPN 240
           FLHEVE D +RAEE Y RAIL SP DGE+LA+YGKL+WD Q+D  RA  YFD+AV ASP+
Sbjct: 181 FLHEVEGDMERAEEYYGRAILESPGDGEVLAMYGKLIWDAQKDGERANAYFDQAVSASPD 240

Query: 241 DCLVIGYYAHFLWLVEDDEEEATAVAPAPAPALVAAF 270
           DC+V+G YAHF+W  E+DEEE  +     + A+VA F
Sbjct: 241 DCMVLGSYAHFMWEAENDEEEEISGEAELSSAMVAVF 269

[Close]

BLAST of CmoCh19G002410 vs. TrEMBL
Match: A0A0B0NU07_GOSAR (Adenosine monophosphate-protein transferase FICD OS=Gossypium arboreum GN=F383_21388 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.3e-47
Identity = 129/281 (45.91%), Postives = 176/281 (62.63%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASSSFS-NYKPLYGAL-SGQNS--SISSPKISLHFEINHRR 60
           M++A++R  S+PV SSA+  S   S + +  +GA+ SG+ S  S+SSP +SLHF ++ R+
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFSGERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  G-KNWSGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDS 120
             ++ + IRRA SE+DI +S   V       GG R       + IPE+E+++  E   D 
Sbjct: 61  PMESRAQIRRALSETDIIKSETRVP------GGSRC----FTAGIPEEEYVSDYEI--DG 120

Query: 121 FADTEFLNS-------GIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILR 180
              TEF  S       G   G GG    D   D   +  K+  YY E+LK NP D L+LR
Sbjct: 121 GCRTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKGKMGDYYREILKLNPGDPLLLR 180

Query: 181 NYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVC 240
           NYG+FLHEVEKD +RAEE Y RAILASP DGE+L+LYG L+W+  RD+ RA+ YFDRAV 
Sbjct: 181 NYGRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGNLIWERHRDESRAKSYFDRAVT 240

Query: 241 ASPNDCLVIGYYAHFLWLVEDDEEEATAVAPAPAPALVAAF 270
           ASP+DC+V+G YA+FLW  E+D+EE   +    + A+VAAF
Sbjct: 241 ASPDDCMVLGSYANFLWDAEEDDEEEVDM----SKAMVAAF 265

[Close]

BLAST of CmoCh19G002410 vs. TrEMBL
Match: A0A0D2QZR9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G183900 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 9.7e-47
Identity = 127/279 (45.52%), Postives = 172/279 (61.65%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASSSFS-NYKPLYGAL---SGQNSSISSPKISLHFEINHRR 60
           M++A++R  S+PV SSA+  S   S + +  +GA+        S+SSP +SLHF ++ R+
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFPVERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GK-NWSGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFH--- 120
            K + + IRRA SE+DI +S   V       GG R       + IPE+E+++  E     
Sbjct: 61  PKESRAQIRRALSETDIIKSETRVP------GGSRC----FTAGIPEEEYVSDYEIDGGF 120

Query: 121 RDSFADT--EFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNY 180
           R  F  +  E   SG   G GG    D   D   +  K+  YY EMLK NP D L+LRNY
Sbjct: 121 RTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKRKMGDYYREMLKLNPGDPLLLRNY 180

Query: 181 GKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCAS 240
           G+FLHEVEKD +RAEE Y RAILASP DGE+L+LYG L+W+  RD+ RA+ YFDRAV AS
Sbjct: 181 GRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGDLIWERHRDESRAKSYFDRAVTAS 240

Query: 241 PNDCLVIGYYAHFLWLVEDDEEEATAVAPAPAPALVAAF 270
           P+DC+V+G YA+FLW  E+D+EE   +    + A+VAAF
Sbjct: 241 PDDCMVLGSYANFLWDAEEDDEEEVEM----SKAMVAAF 265

[Close]

BLAST of CmoCh19G002410 vs. TAIR10
Match: AT4G17940.1 (AT4G17940.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 171.8 bits (434), Expect = 5.8e-43
Identity = 116/292 (39.73%), Postives = 162/292 (55.48%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPL-----YGALSGQNSSISSPKISLHFEINHR 60
           M+S L+RT S+PVL + + +  S     P+       +LS      +  KIS+  + N  
Sbjct: 1   MKSLLMRTGSMPVLQNRLISGGSSRKMTPISRTNSVESLSSYGERFAGGKISIEVKAN-- 60

Query: 61  RGKNWSGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDS 120
                 G+RR  SESD+ RS   +     + G   S     P+ IPED+   ++E     
Sbjct: 61  -----VGMRRVLSESDVIRSERMLK----RVGSKPS-----PARIPEDDEAGEEEIR--- 120

Query: 121 FADTE--------------FLNSGIVSGDG-GDFVADKFSDGSSESSKIRAYYEEMLKSN 180
           FAD                F   G+  G G      +    G  + SKI  YY EML+SN
Sbjct: 121 FADGWGSMISGGLPVEEKCFTGGGVGGGSGYSGGYGNGGGGGYEDKSKIGDYYREMLRSN 180

Query: 181 PSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQ 240
           P+++L+L NYGKFL+EVEKD++ AEE Y RAIL +P DGE L++YG+L+W+T+RD++RAQ
Sbjct: 181 PNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQ 240

Query: 241 YYFDRAVCASPNDCLVIGYYAHFLWLVE----DDEEEATAVAPAPAPALVAA 269
            YFD+AV ASPNDC+V+G YA F+W  E    DDEEE      A +P +V+A
Sbjct: 241 GYFDQAVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEEEEWMAASPLMVSA 273

[Close]

BLAST of CmoCh19G002410 vs. TAIR10
Match: AT5G20190.1 (AT5G20190.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 119.0 bits (297), Expect = 4.5e-27
Identity = 89/273 (32.60%), Postives = 132/273 (48.35%), Query Frame = 1


Query: 5   LIRTVSVPVLSSAVAASS-------------SFSNYKPLYGALSGQNSSISSPKISLHFE 64
           L+R+ S P+L+S V  SS                 ++ +   LS  +SS     +S+H  
Sbjct: 2   LLRSASTPLLNSLVHVSSPRDSPIETVESVHQIQRHRSI--TLSASSSSCCYSPMSVHSS 61

Query: 65  INHRRGKNWSGIRRAASESDISRSLHEVSSPYDQF--GGFRSRYWSVPSEIPED---EFL 124
            +  R      ++R AS+SD+ R L     P  +F  GG      ++  ++ E      +
Sbjct: 62  DDSSRR-----MKRTASDSDL-RHLTSTKPPVSKFLSGG------ALMEDVDEGIGFGLI 121

Query: 125 NQDEFHRDSFA---DTEFLNSG---IVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSN 184
               +   S+A   DTE    G   +  G G      +   G         +Y +M+++N
Sbjct: 122 RTSSYDGISWALDEDTEVAGGGGGGMFHGGGKGRSGGRSDGGDGGDDNTDVHYRKMIEAN 181

Query: 185 PSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQ 244
           P + + L NY KFL EV KD  +AEE   RAIL SP DG +LA+Y +LVW   +D  RA+
Sbjct: 182 PGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWKIHKDSSRAE 241

Query: 245 YYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEE 254
            YF++AV A+P DC V   YA FLW  E++EEE
Sbjct: 242 NYFNQAVAAAPEDCYVQASYARFLWDAEEEEEE 260

[Close]

BLAST of CmoCh19G002410 vs. TAIR10
Match: AT4G32340.1 (AT4G32340.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-26
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 1


Query: 123 NSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKDSK 182
           ++G   G GGD        G      +  YYEEM++  P D L+L NY +FL EV+ D +
Sbjct: 87  SNGGFGGRGGDGAG---GGGGGGGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGR 146

Query: 183 RAEECYSRAILA-SPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYYA 242
           +AEE   RA+L+ S RDGELL++YG L+W    D  RAQ Y+D+AV +SP+DC V+  YA
Sbjct: 147 KAEEYCERAMLSESGRDGELLSMYGDLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYA 206

Query: 243 HFLWLVEDDEEE 254
            FLW  E++ EE
Sbjct: 207 RFLWDAEEEVEE 215

[Close]

BLAST of CmoCh19G002410 vs. TAIR10
Match: AT1G80130.1 (AT1G80130.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24
Identity = 55/124 (44.35%), Postives = 74/124 (59.68%), Query Frame = 1


Query: 130 DGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKDSKRAEECYS 189
           +GG  V     DG         YY EM+ SNP ++L+  NY KFL EV+ D K+AEE   
Sbjct: 146 NGGGGVGGSGVDGGRSEDATDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCE 205

Query: 190 RAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVED 249
           RAIL +  DG +L+LY  L+    +D++RA  Y+ +AV  SP DC V   YA FLW V++
Sbjct: 206 RAILGNTNDGNVLSLYADLILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDE 265

Query: 250 DEEE 254
           DEE+
Sbjct: 266 DEED 269

[Close]

BLAST of CmoCh19G002410 vs. TAIR10
Match: AT1G04530.1 (AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-19
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 152 YYEEMLKSNPSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWD 211
           YY+ ML+  P   L+L+NY KFL E + D   AEE Y +  +  P DG  LA YG+LV  
Sbjct: 124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 183

Query: 212 TQRDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEE 254
             +D+ +A  YF+RAV ASP+D +V+  YA FLW +  D+++
Sbjct: 184 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADDDD 224

[Close]

BLAST of CmoCh19G002410 vs. NCBI nr
Match: gi|659132057|ref|XP_008465993.1| (PREDICTED: uncharacterized protein LOC103503559 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 1.0e-73
Identity = 164/264 (62.12%), Postives = 189/264 (71.59%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL+RT SVP+LS    AS+   N +PLYG LS  NSS SSP+ISLH   N     N 
Sbjct: 1   MKSALLRTGSVPLLSPTTTASN---NKQPLYGVLSCHNSSASSPRISLHCTRN-----NS 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWS--VPSEIPEDEFLNQDE-FHRDSFA 120
           + IRRAASESDI RSLHEVS+  DQF G  SR  S   PS+IPE+EF+++D+ F  DS  
Sbjct: 61  NRIRRAASESDIVRSLHEVSNTSDQFSGLASRSLSRSFPSKIPEEEFIDEDDQFDSDSME 120

Query: 121 -DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHE 180
            D E+LN  +               G ++ SKI AYYE MLK NPSDAL+LRNYGKFLHE
Sbjct: 121 EDKEYLNYRV---------------GVNDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHE 180

Query: 181 VEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLV 240
           V  D+KRAEECYSRAILASP DGELLALYGKLVWDT+RDK+RAQYYFDRAV ASPNDCLV
Sbjct: 181 VVNDTKRAEECYSRAILASPTDGELLALYGKLVWDTERDKQRAQYYFDRAVYASPNDCLV 240

Query: 241 IGYYAHFLWLVEDDEEEATAVAPA 261
            G+YAHF+W VEDDE      +PA
Sbjct: 241 TGHYAHFMWQVEDDEAALAEDSPA 241

[Close]

BLAST of CmoCh19G002410 vs. NCBI nr
Match: gi|449437232|ref|XP_004136396.1| (PREDICTED: uncharacterized protein LOC101218835 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 1.3e-73
Identity = 175/279 (62.72%), Postives = 195/279 (69.89%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYK-PLYGALSGQNSSISSPK-ISLHF-EINHRRG 60
           M+SAL+RT SVP+LS     SSSFSN K PLYG  S  NSS SSP+ ISLH+   NH   
Sbjct: 1   MKSALLRTGSVPLLSPTTTPSSSFSNNKQPLYGLFSSHNSSTSSPRSISLHYCTRNHS-- 60

Query: 61  KNWSGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWS---VPSEIPEDEFLNQDE---F 120
              + IRRAASESDI RSLH+VS+  DQF G  SR  S    PS+IPE+EFLN+D    F
Sbjct: 61  ---NHIRRAASESDIVRSLHQVSNTSDQFSGLASRSRSRSSFPSKIPEEEFLNEDHDQIF 120

Query: 121 HRDSFA-DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNY 180
             DS   D  FLNS I               G ++ SKI AYYE MLK NPSDAL+LRNY
Sbjct: 121 DGDSMEEDKVFLNSPI---------------GINDRSKIGAYYEHMLKLNPSDALLLRNY 180

Query: 181 GKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCAS 240
           GKFLHEV  DSKRAEECYSRAILASP DGELLALYGKLVWDTQRDK+RAQYYFDRAV AS
Sbjct: 181 GKFLHEVANDSKRAEECYSRAILASPTDGELLALYGKLVWDTQRDKQRAQYYFDRAVYAS 240

Query: 241 PNDCLVIGYYAHFLWLVEDDEEEATAVAPAPAPALVAAF 270
           PNDCLV G+YAHF+W VE+D  EA A A   A  +V A+
Sbjct: 241 PNDCLVTGHYAHFMWEVEED--EAAASAEDSAAGMVRAY 257

[Close]

BLAST of CmoCh19G002410 vs. NCBI nr
Match: gi|1009157808|ref|XP_015896952.1| (PREDICTED: uncharacterized protein LOC107430603 [Ziziphus jujuba])

HSP 1 Score: 206.5 bits (524), Expect = 6.0e-50
Identity = 136/301 (45.18%), Postives = 179/301 (59.47%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASSS--FSNYKPLYGALSGQNSSISSPKISLHFEINHRRGK 60
           M+S LIR  SVPV S  V  S     S    L G  S +NSS+  PK SLHF++N R  K
Sbjct: 1   MKSLLIRAGSVPVQSPHVCGSPRVCLSRSNSLSGVFSSENSSVFRPKASLHFDVNCRGDK 60

Query: 61  NWSGIRRAASESDISRSLHEVS----------SPYDQF----------GGFRS---RYWS 120
              GIRR  SE+D+ RS++E S           P +++          GG  S   R  S
Sbjct: 61  ---GIRRVCSENDVIRSVNEFSGGSFSCFPARIPEEEYVSEGGDDDDNGGISSLLRRSAS 120

Query: 121 VPSEIPEDEFLNQDEFHRDSFADTEFLNSG-IVSGDGG--DFVADKFSDGSSESSKIRAY 180
                PE     ++      F+   F   G    GDGG  D+     S G+S+ SKI  Y
Sbjct: 121 FSGVRPECGIPLEEH----GFSGGGFGKGGKSAGGDGGGDDYGFSSLSGGNSDRSKIGDY 180

Query: 181 YEEMLKSNPSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDT 240
           Y++MLK NPSD+L+LRNYGKFL EVEKD++ AEE YSRAILA+P DGELL+LYGKL+WDT
Sbjct: 181 YQKMLKKNPSDSLLLRNYGKFLQEVEKDTEGAEEYYSRAILANPGDGELLSLYGKLIWDT 240

Query: 241 QRDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEEATAV----APAPAPALVAA 270
           +RD+ RA+ YFD+AV ASP+DC+V+G YAHF+W  ++D+++   +      +P+ ALV A
Sbjct: 241 ERDEDRAKSYFDQAVHASPDDCMVLGSYAHFMWEADEDDDDTEEINKKTEMSPSRALVPA 294

[Close]

BLAST of CmoCh19G002410 vs. NCBI nr
Match: gi|1021515359|ref|XP_016201131.1| (PREDICTED: uncharacterized protein LOC107642331 [Arachis ipaensis])

HSP 1 Score: 200.3 bits (508), Expect = 4.3e-48
Identity = 122/257 (47.47%), Postives = 154/257 (59.92%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M ++LIRT SVPVL+     S   S   P   + SG NS + SP +S+H + + RR    
Sbjct: 1   MRASLIRTGSVPVLNPVRNCSPRLS--LPRQASFSGDNSRVQSPSLSIHLDSDGRRDLPP 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
           SGIRR  SES I RS  E            +R +  P  + EDE               E
Sbjct: 61  SGIRRVMSESSI-RSASEGFGAIQDLKRRGTRPF--PVIVREDE--------------DE 120

Query: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKD 180
            +  G   G G   +A        +  KI AYYEEMLKSNP+DAL+LRNYGKFLHEVEKD
Sbjct: 121 EVGGGSGYGGGDRRIATATGGNGGDRMKIGAYYEEMLKSNPTDALLLRNYGKFLHEVEKD 180

Query: 181 SKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYY 240
           + +AEE Y RAILA+P DGELL+LYG L+W+TQRD+ RA+ YFD+AV A+P+DC V+G Y
Sbjct: 181 TAKAEEYYGRAILANPGDGELLSLYGTLIWETQRDEERAKSYFDQAVYAAPDDCTVLGSY 238

Query: 241 AHFLWLVEDDEEEATAV 258
           AHF+W  E++EEE   V
Sbjct: 241 AHFMWEAEEEEEEEEEV 238

[Close]

BLAST of CmoCh19G002410 vs. NCBI nr
Match: gi|255573455|ref|XP_002527653.1| (PREDICTED: uncharacterized protein LOC8289072 [Ricinus communis])

HSP 1 Score: 199.9 bits (507), Expect = 5.6e-48
Identity = 131/279 (46.95%), Postives = 166/279 (59.50%), Query Frame = 1


Query: 1   MESALIRTVSVPVLSSAVAASS--SFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGK 60
           M+S L+RT S+   +     S   S S    +   LSG+ S+ +SPK SLH EIN R  K
Sbjct: 1   MKSLLLRTGSIQAHAPVTCGSPKLSLSRRNSISSVLSGEKSTANSPKFSLHLEINSR--K 60

Query: 61  NWSGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFAD 120
             + IRRA SE+DI RS  E      + G       S P+ I E+E+ N      ++   
Sbjct: 61  RDTLIRRALSETDIIRS--ETEEMLSRAGSM-----SFPARILEEEYSNLTYIWPENGIP 120

Query: 121 TEFLNSGIVSGDGGDFVADKFSDG---------SSESSKIRAYYEEMLKSNPSDALILRN 180
            E L  G  SG  G F   K S G         S + SKI  YY EMLKSNP+D+L+LRN
Sbjct: 121 LEEL--GFSSGGDG-FGKGKNSGGGNGGVDGNSSDDLSKIGDYYTEMLKSNPNDSLLLRN 180

Query: 181 YGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCA 240
           YGKFLHEVE D +RAEE Y RAILA P DGE+L+LYGKL+WD QRD  RA+ YFD+AV A
Sbjct: 181 YGKFLHEVEGDMERAEEYYGRAILAGPGDGEVLSLYGKLIWDRQRDGERAKAYFDQAVSA 240

Query: 241 SPNDCLVIGYYAHFLWLVEDDEEEATAVAPAPAPALVAA 269
           +P+DC+V+G YAHF+W  E++EEE        +PA+V A
Sbjct: 241 APHDCMVMGSYAHFMWEAEEEEEEEINSKAQISPAMVVA 267

The following BLAST results are available for this feature:

BLAST of CmoCh19G002410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G002410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH65_CUCSA	9.3e-74	62.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G901150 PE=4 SV=1	[more]
B9SNT4_RICCO	3.9e-48	46.95	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278170 PE=4 SV=1	[more]
A0A067KMJ7_JATCU	1.1e-47	45.13	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13620 PE=4 SV=1	[more]
A0A0B0NU07_GOSAR	4.3e-47	45.91	Adenosine monophosphate-protein transferase FICD OS=Gossypium arboreum GN=F383_2...	[more]
A0A0D2QZR9_GOSRA	9.7e-47	45.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G183900 PE=4 SV=1	[more]

BLAST of CmoCh19G002410 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17940.1	5.8e-43	39.73	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G20190.1	4.5e-27	32.60	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G32340.1	3.8e-26	45.45	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G80130.1	1.2e-24	44.35	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G04530.1	5.8e-19	44.12	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CmoCh19G002410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132057\|ref\|XP_008465993.1\|	1.0e-73	62.12	PREDICTED: uncharacterized protein LOC103503559 [Cucumis melo]	[more]
gi\|449437232\|ref\|XP_004136396.1\|	1.3e-73	62.72	PREDICTED: uncharacterized protein LOC101218835 [Cucumis sativus]	[more]
gi\|1009157808\|ref\|XP_015896952.1\|	6.0e-50	45.18	PREDICTED: uncharacterized protein LOC107430603 [Ziziphus jujuba]	[more]
gi\|1021515359\|ref\|XP_016201131.1\|	4.3e-48	47.47	PREDICTED: uncharacterized protein LOC107642331 [Arachis ipaensis]	[more]
gi\|255573455\|ref\|XP_002527653.1\|	5.6e-48	46.95	PREDICTED: uncharacterized protein LOC8289072 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G002410.1	CmoCh19G002410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 148..250 score: 2.4
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 151..252 score: 3.79
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 152..233 score: 11
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 90..253 score: 1.8
None	No IPR available	PANTHER	PTHR26312:SF53	CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN	coord: 90..253 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G002410	Cucsa.312970	Cucumber (Gy14) v1	cgycmoB0866
CmoCh19G002410	CmaCh19G002270	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G002410	CmaCh02G016230	Cucurbita maxima (Rimu)	cmacmoB598
CmoCh19G002410	Csa3G901150	Cucumber (Chinese Long) v2	cmocuB501
CmoCh19G002410	MELO3C003424	Melon (DHL92) v3.5.1	cmomeB462
CmoCh19G002410	CSPI03G46560	Wild cucumber (PI 183967)	cmocpiB507
CmoCh19G002410	LsiUNG000260	Bottle gourd (USVL1VR-Ls)	cmolsiB447
CmoCh19G002410	Cp4.1LG15g02090	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G002410	Cp4.1LG05g00170	Cucurbita pepo (Zucchini)	cmocpeB498
CmoCh19G002410	MELO3C003424.2	Melon (DHL92) v3.6.1	cmomedB533
CmoCh19G002410	CsaV3_3G049010	Cucumber (Chinese Long) v3	cmocucB0599
CmoCh19G002410	Bhi05G000312	Wax gourd	cmowgoB0644
CmoCh19G002410	CsGy3G044000	Cucumber (Gy14) v2	cgybcmoB349
CmoCh19G002410	Carg08849	Silver-seed gourd	carcmoB1055
CmoCh19G002410	Carg24530	Silver-seed gourd	carcmoB1301

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G002410	CmoCh02G016680	Cucurbita moschata (Rifu)	cmocmoB387

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G002410	Cucurbita moschata (Rifu)	cmocmoB277
CmoCh19G002410	Cucurbita moschata (Rifu)	cmocmoB396
CmoCh19G002410	Cucumber (Gy14) v1	cgycmoB0888
CmoCh19G002410	Cucurbita maxima (Rimu)	cmacmoB331
CmoCh19G002410	Cucurbita maxima (Rimu)	cmacmoB816
CmoCh19G002410	Wild cucumber (PI 183967)	cmocpiB509
CmoCh19G002410	Cucumber (Chinese Long) v2	cmocuB503
CmoCh19G002410	Melon (DHL92) v3.5.1	cmomeB472
CmoCh19G002410	Watermelon (Charleston Gray)	cmowcgB440
CmoCh19G002410	Watermelon (Charleston Gray)	cmowcgB453
CmoCh19G002410	Watermelon (97103) v1	cmowmB464
CmoCh19G002410	Watermelon (97103) v1	cmowmB479
CmoCh19G002410	Cucurbita pepo (Zucchini)	cmocpeB480
CmoCh19G002410	Cucurbita pepo (Zucchini)	cmocpeB509
CmoCh19G002410	Bottle gourd (USVL1VR-Ls)	cmolsiB481
CmoCh19G002410	Cucumber (Gy14) v2	cgybcmoB351
CmoCh19G002410	Melon (DHL92) v3.6.1	cmomedB544
CmoCh19G002410	Silver-seed gourd	carcmoB0678
CmoCh19G002410	Silver-seed gourd	carcmoB1292
CmoCh19G002410	Cucumber (Chinese Long) v3	cmocucB0601
CmoCh19G002410	Watermelon (97103) v2	cmowmbB504
CmoCh19G002410	Watermelon (97103) v2	cmowmbB529