LsiUNG000260 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	LsiUNG000260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Location	chr00 : 456578 .. 457885 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGCCAAAAGAAAGAAAGAAAAAAACTCTGCCATTTCATAACCTTCGCAACTTTGCAGCTATGAAATCCGCTCTCCTCCGAACCGGATCCGTTCCCGTCATCTCGCCGGCCGCCGCCGCTTCTTCTTCCTTCTCCAACAACAAACCGTTGTATGGAGTTTTCTCCTGCCACAAAAGTTCATCTTCATCTCCGAAAATATCTCTACATTTTGAAATCAATCATCGCAGAGGAAATAATTCCAGTAGTATCCGAAGAGCAGCATCGGAGAGCGACATCACACGATCGCTGCACGAGGTTTCCAATCCATACGATCAATCCAGTGGTGTCAGATCTCGATCTCGGTCCTTTCCTTCCGGAATTCCAGAGGAGGAGTTTCTAAACGAGGATGAATTCGACAGTAATTCCATGGAGGATGGCGCTAAGTTTGTTGCAGATACGTTTTCGAACGGAATCAATGACCGTAAGATCAGAGCGTACTACGAAGAGTTGCTGAAATTGAACCCTAGCGACGCTCTGTTACTAAGAAACTACGGAAAATTCTTACACGAGGTAATTGAAAACTAGAATTATCAAATTGAAAGTGTATTTGGATCTGAAATCATGAAACGTAACCGAATCTTAGAGTTGAATTTGTTGAAATTGTAAAGGTGTTGAAAGATACAATACGAGCGGAAGAATGCTACAGCAGAGCAATATTAGCGAGTCCAACAGACGGTGAATTACTGGCTCTATACGGAAAATTAGTATGGGATACTCAAAGAGATAAGCGAAGAGCTCAATATTACTTCGATCGGGCCGTCTATGCCTCTCCTAACGACTGGTAATTTCGGATCTGTTGATTTAGCAATTAAGCCCTAATTTTATGAACCGGAAGGTTTCTGAATGTTATGAATTTTGTTTTGTGAAGTTTGGTGATAGGACATTACGCTCATTTCTTGTGGCAAGTTGAAGACGATGAGGCGGAGGCGGCTCCACCGCCGGCCATGGTAGCTGCGTGTTAATGTCGATGAAGAGGGAGGGTTTTTGGGAAATTAGGAGAGGAAGAACTAACAAAGGAAGTGGGCATGTGATTTGTGCATGGGCCATTTCAAGAGGGAATAAGATTCAGTATGGGGGCTGCTGTCATTTTTCTATTTTATTATATTTAAACCTCTTTTACATTAATTTTTTTTTTCTCTTTTGTAAAAGTGTAAAATTATAATTTTTTGGGACAGTTTAATCCATGTTTACTTAACATTCCATGTCTAATGTAATGCAGTCCGAATAATAAGAATAACTCAGATTTATTTATTTATTATTATTATTA

mRNA sequence

AATAGCCAAAAGAAAGAAAGAAAAAAACTCTGCCATTTCATAACCTTCGCAACTTTGCAGCTATGAAATCCGCTCTCCTCCGAACCGGATCCGTTCCCGTCATCTCGCCGGCCGCCGCCGCTTCTTCTTCCTTCTCCAACAACAAACCGTTGTATGGAGTTTTCTCCTGCCACAAAAGTTCATCTTCATCTCCGAAAATATCTCTACATTTTGAAATCAATCATCGCAGAGGAAATAATTCCAGTAGTATCCGAAGAGCAGCATCGGAGAGCGACATCACACGATCGCTGCACGAGGTTTCCAATCCATACGATCAATCCAGTGGTGTCAGATCTCGATCTCGGTCCTTTCCTTCCGGAATTCCAGAGGAGGAGTTTCTAAACGAGGATGAATTCGACAGTAATTCCATGGAGGATGGCGCTAAGTTTGTTGCAGATACGTTTTCGAACGGAATCAATGACCGTAAGATCAGAGCGTACTACGAAGAGTTGCTGAAATTGAACCCTAGCGACGCTCTGTTACTAAGAAACTACGGAAAATTCTTACACGAGGTGTTGAAAGATACAATACGAGCGGAAGAATGCTACAGCAGAGCAATATTAGCGAGTCCAACAGACGGTGAATTACTGGCTCTATACGGAAAATTAGTATGGGATACTCAAAGAGATAAGCGAAGAGCTCAATATTACTTCGATCGGGCCGTCTATGCCTCTCCTAACGACTGTTTGGTGATAGGACATTACGCTCATTTCTTGTGGCAAGTTGAAGACGATGAGGCGGAGGCGGCTCCACCGCCGGCCATGGTAGCTGCGTGTTAATGTCGATGAAGAGGGAGGGTTTTTGGGAAATTAGGAGAGGAAGAACTAACAAAGGAAGTGGGCATGTGATTTGTGCATGGGCCATTTCAAGAGGGAATAAGATTCAGTATGGGGGCTGCTGTCATTTTTCTATTTTATTATATTTAAACCTCTTTTACATTAATTTTTTTTTTCTCTTTTGTAAAAGTGTAAAATTATAATTTTTTGGGACAGTTTAATCCATGTTTACTTAACATTCCATGTCTAATGTAATGCAGTCCGAATAATAAGAATAACTCAGATTTATTTATTTATTATTATTATTA

Coding sequence (CDS)

ATGAAATCCGCTCTCCTCCGAACCGGATCCGTTCCCGTCATCTCGCCGGCCGCCGCCGCTTCTTCTTCCTTCTCCAACAACAAACCGTTGTATGGAGTTTTCTCCTGCCACAAAAGTTCATCTTCATCTCCGAAAATATCTCTACATTTTGAAATCAATCATCGCAGAGGAAATAATTCCAGTAGTATCCGAAGAGCAGCATCGGAGAGCGACATCACACGATCGCTGCACGAGGTTTCCAATCCATACGATCAATCCAGTGGTGTCAGATCTCGATCTCGGTCCTTTCCTTCCGGAATTCCAGAGGAGGAGTTTCTAAACGAGGATGAATTCGACAGTAATTCCATGGAGGATGGCGCTAAGTTTGTTGCAGATACGTTTTCGAACGGAATCAATGACCGTAAGATCAGAGCGTACTACGAAGAGTTGCTGAAATTGAACCCTAGCGACGCTCTGTTACTAAGAAACTACGGAAAATTCTTACACGAGGTGTTGAAAGATACAATACGAGCGGAAGAATGCTACAGCAGAGCAATATTAGCGAGTCCAACAGACGGTGAATTACTGGCTCTATACGGAAAATTAGTATGGGATACTCAAAGAGATAAGCGAAGAGCTCAATATTACTTCGATCGGGCCGTCTATGCCTCTCCTAACGACTGTTTGGTGATAGGACATTACGCTCATTTCTTGTGGCAAGTTGAAGACGATGAGGCGGAGGCGGCTCCACCGCCGGCCATGGTAGCTGCGTGTTAA

Protein sequence

MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNSSSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDEFDSNSMEDGAKFVADTFSNGINDRKIRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAEAAPPPAMVAAC

Homology

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BLAST of LsiUNG000260 vs. TrEMBL
Match: A0A0A0LH65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G901150 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.3e-87
Identity = 184/251 (73.31%), Postives = 204/251 (81.27%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNK-PLYGVFSCHKSSSSSPK-ISLHFEINHRRGN 60
           MKSALLRTGSVP++SP    SSSFSNNK PLYG+FS H SS+SSP+ ISLH+       N
Sbjct: 1   MKSALLRTGSVPLLSPTTTPSSSFSNNKQPLYGLFSSHNSSTSSPRSISLHYCTR----N 60

Query: 61  NSSSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRS---FPSGIPEEEFLNEDE---FD 120
           +S+ IRRAASESDI RSLH+VSN  DQ SG+ SRSRS   FPS IPEEEFLNED    FD
Sbjct: 61  HSNHIRRAASESDIVRSLHQVSNTSDQFSGLASRSRSRSSFPSKIPEEEFLNEDHDQIFD 120

Query: 121 SNSMEDGAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRA 180
            +SME+   F+      GINDR KI AYYE +LKLNPSDALLLRNYGKFLHEV  D+ RA
Sbjct: 121 GDSMEEDKVFLNSPI--GINDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHEVANDSKRA 180

Query: 181 EECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFL 240
           EECYSRAILASPTDGELLALYGKLVWDTQRDK+RAQYYFDRAVYASPNDCLV GHYAHF+
Sbjct: 181 EECYSRAILASPTDGELLALYGKLVWDTQRDKQRAQYYFDRAVYASPNDCLVTGHYAHFM 240

Query: 241 WQVEDDEAEAA 243
           W+VE+DEA A+
Sbjct: 241 WEVEEDEAAAS 245

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BLAST of LsiUNG000260 vs. TrEMBL
Match: A0A061G302_THECC (Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_015687 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-51
Identity = 138/300 (46.00%), Postives = 176/300 (58.67%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASS--SFSNNKPLYGVFSCHKSSSS--SPKISLHFEINHRR 60
           MK+ALLR GSVPV SPA  +S   S S    + G++SC ++  S  SP ISLHF +N R+
Sbjct: 1   MKAALLRAGSVPVPSPALCSSPKVSLSRQSSIGGIYSCERAGCSPCSPIISLHFPMNKRK 60

Query: 61  GNNS-SSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDE----- 120
              + + +RRA S++DI RS           S +   SR F +GIPEEE+L++ E     
Sbjct: 61  PKETHTHMRRALSDTDIIRS----------ESRIPGGSRCFRAGIPEEEYLSDGEVGREF 120

Query: 121 -------------FDSNSMEDGAK-----FVADTFSNG------------INDRKIRAYY 180
                        F+S   E G       F  D F NG             ++ KI  YY
Sbjct: 121 RTLVTGKGSDRASFESIWPEFGISMEEIGFSGDGFGNGGKSGGDHGDDSFGDESKIGDYY 180

Query: 181 EELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQ 240
            E+LKLNPSD+LLLRNYG+FLHEV KD  RAEE Y RAILASP DGE+L+LYGK +W+  
Sbjct: 181 REMLKLNPSDSLLLRNYGRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGKFIWERH 240

Query: 241 RDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDE----------AEAAPPPAMVAA 251
           RD+ RA+ YFDRAV ASP+DC+V+G YAHF+W+ E+DE          A+    PAMVAA
Sbjct: 241 RDETRAKSYFDRAVAASPDDCMVLGSYAHFMWESEEDEEQEQEEKEMGAQVGVSPAMVAA 290

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BLAST of LsiUNG000260 vs. TrEMBL
Match: A0A0D2QZR9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G183900 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.9e-49
Identity = 133/274 (48.54%), Postives = 165/274 (60.22%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASS--SFSNNKPLYGVFSCHKS--SSSSPKISLHFEINHRR 60
           MK+A+LR GS+PV S A   S   S S       VF   +S  S SSP +SLHF ++ R+
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFPVERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GNNS-SSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDEFDSN- 120
              S + IRRA SE+DI +S           + V   SR F +GIPEEE++++ E D   
Sbjct: 61  PKESRAQIRRALSETDIIKS----------ETRVPGGSRCFTAGIPEEEYVSDYEIDGGF 120

Query: 121 ------SMED----------GAKFVADTFSNGIND-RKIRAYYEELLKLNPSDALLLRNY 180
                 SME+          G K   D   +   D RK+  YY E+LKLNP D LLLRNY
Sbjct: 121 RTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKRKMGDYYREMLKLNPGDPLLLRNY 180

Query: 181 GKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYAS 240
           G+FLHEV KD  RAEE Y RAILASP DGE+L+LYG L+W+  RD+ RA+ YFDRAV AS
Sbjct: 181 GRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGDLIWERHRDESRAKSYFDRAVTAS 240

Query: 241 PNDCLVIGHYAHFLWQV-EDDEAEAAPPPAMVAA 251
           P+DC+V+G YA+FLW   EDDE E     AMVAA
Sbjct: 241 PDDCMVLGSYANFLWDAEEDDEEEVEMSKAMVAA 264

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BLAST of LsiUNG000260 vs. TrEMBL
Match: A0A0B0NU07_GOSAR (Adenosine monophosphate-protein transferase FICD OS=Gossypium arboreum GN=F383_21388 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.3e-49
Identity = 133/274 (48.54%), Postives = 166/274 (60.58%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASS--SFSNNKPLYGVFSCHKS--SSSSPKISLHFEINHRR 60
           MK+A+LR GS+PV S A   S   S S       VFS  +S  S SSP +SLHF ++ R+
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFSGERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GNNS-SSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDEFDSN- 120
              S + IRRA SE+DI +S           + V   SR F +GIPEEE++++ E D   
Sbjct: 61  PMESRAQIRRALSETDIIKS----------ETRVPGGSRCFTAGIPEEEYVSDYEIDGGC 120

Query: 121 ------SMED----------GAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNY 180
                 SME+          G K   D   +   D+ K+  YY E+LKLNP D LLLRNY
Sbjct: 121 RTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKGKMGDYYREILKLNPGDPLLLRNY 180

Query: 181 GKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYAS 240
           G+FLHEV KD  RAEE Y RAILASP DGE+L+LYG L+W+  RD+ RA+ YFDRAV AS
Sbjct: 181 GRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGNLIWERHRDESRAKSYFDRAVTAS 240

Query: 241 PNDCLVIGHYAHFLWQV-EDDEAEAAPPPAMVAA 251
           P+DC+V+G YA+FLW   EDDE E     AMVAA
Sbjct: 241 PDDCMVLGSYANFLWDAEEDDEEEVDMSKAMVAA 264

[Close]

BLAST of LsiUNG000260 vs. TrEMBL
Match: B9SNT4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278170 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.1e-47
Identity = 131/276 (47.46%), Postives = 161/276 (58.33%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASS--SFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGN 60
           MKS LLRTGS+   +P    S   S S    +  V S  KS+++SPK SLH EIN R+  
Sbjct: 1   MKSLLLRTGSIQAHAPVTCGSPKLSLSRRNSISSVLSGEKSTANSPKFSLHLEINSRK-- 60

Query: 61  NSSSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDE-FDSNSM- 120
             + IRRA SE+DI RS  E           R+ S SFP+ I EEE+ N    +  N + 
Sbjct: 61  RDTLIRRALSETDIIRSETEEMLS-------RAGSMSFPARILEEEYSNLTYIWPENGIP 120

Query: 121 --EDGAKFVADTFSNGIND---------------RKIRAYYEELLKLNPSDALLLRNYGK 180
             E G     D F  G N                 KI  YY E+LK NP+D+LLLRNYGK
Sbjct: 121 LEELGFSSGGDGFGKGKNSGGGNGGVDGNSSDDLSKIGDYYTEMLKSNPNDSLLLRNYGK 180

Query: 181 FLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPN 240
           FLHEV  D  RAEE Y RAILA P DGE+L+LYGKL+WD QRD  RA+ YFD+AV A+P+
Sbjct: 181 FLHEVEGDMERAEEYYGRAILAGPGDGEVLSLYGKLIWDRQRDGERAKAYFDQAVSAAPH 240

Query: 241 DCLVIGHYAHFLWQVEDDEAE-----AAPPPAMVAA 251
           DC+V+G YAHF+W+ E++E E     A   PAMV A
Sbjct: 241 DCMVMGSYAHFMWEAEEEEEEEINSKAQISPAMVVA 267

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BLAST of LsiUNG000260 vs. TAIR10
Match: AT4G17940.1 (AT4G17940.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 157.9 bits (398), Expect = 8.1e-39
Identity = 108/289 (37.37%), Postives = 152/289 (52.60%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSS-----SSPKISLHFEINHR 60
           MKS L+RTGS+PV+     +  S     P+    S    SS     +  KIS+  + N  
Sbjct: 1   MKSLLMRTGSMPVLQNRLISGGSSRKMTPISRTNSVESLSSYGERFAGGKISIEVKAN-- 60

Query: 61  RGNNSSSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDE----- 120
                  +RR  SESD+ RS   +          R  S+  P+ IPE++   E+E     
Sbjct: 61  -----VGMRRVLSESDVIRSERMLK---------RVGSKPSPARIPEDDEAGEEEIRFAD 120

Query: 121 ----------------FDSNSMEDGAKF---VADTFSNGINDR-KIRAYYEELLKLNPSD 180
                           F    +  G+ +     +    G  D+ KI  YY E+L+ NP++
Sbjct: 121 GWGSMISGGLPVEEKCFTGGGVGGGSGYSGGYGNGGGGGYEDKSKIGDYYREMLRSNPNN 180

Query: 181 ALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYF 240
           +LLL NYGKFL+EV KD   AEE Y RAIL +P DGE L++YG+L+W+T+RD++RAQ YF
Sbjct: 181 SLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQGYF 240

Query: 241 DRAVYASPNDCLVIGHYAHFLWQVEDDEAE---------AAPPPAMVAA 251
           D+AV ASPNDC+V+G YA F+W+ EDD+ +          A  P MV+A
Sbjct: 241 DQAVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEEEEWMAASPLMVSA 273

[Close]

BLAST of LsiUNG000260 vs. TAIR10
Match: AT5G20190.1 (AT5G20190.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-24
Identity = 86/263 (32.70%), Postives = 128/263 (48.67%), Query Frame = 1


Query: 5   LLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHK---------SSSSSPKISLHFEINHR 64
           LLR+ S P+++     SS    + P+  V S H+         S+SSS        + H 
Sbjct: 2   LLRSASTPLLNSLVHVSSP--RDSPIETVESVHQIQRHRSITLSASSSSCCYSPMSV-HS 61

Query: 65  RGNNSSSIRRAASESDITRSLHEVSNPY-------------DQSSG---VRSRSRSFPSG 124
             ++S  ++R AS+SD+ R L     P              D+  G   +R+ S    S 
Sbjct: 62  SDDSSRRMKRTASDSDL-RHLTSTKPPVSKFLSGGALMEDVDEGIGFGLIRTSSYDGISW 121

Query: 125 IPEEEFLNEDEFDSNSMEDGAKFVADTFSNGIN--DRKIRAYYEELLKLNPSDALLLRNY 184
             +E+              G K  +   S+G +  D     +Y ++++ NP + + L NY
Sbjct: 122 ALDEDTEVAGGGGGGMFHGGGKGRSGGRSDGGDGGDDNTDVHYRKMIEANPGNGIFLSNY 181

Query: 185 GKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYAS 241
            KFL EV KD ++AEE   RAIL SP DG +LA+Y +LVW   +D  RA+ YF++AV A+
Sbjct: 182 AKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWKIHKDSSRAENYFNQAVAAA 241

[Close]

BLAST of LsiUNG000260 vs. TAIR10
Match: AT4G32340.1 (AT4G32340.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-24
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 1


Query: 136 IRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILA-SPTDGELLALYGK 195
           +  YYEE+++  P D LLL NY +FL EV  D  +AEE   RA+L+ S  DGELL++YG 
Sbjct: 110 VDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGD 169

Query: 196 LVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAE 241
           L+W    D  RAQ Y+D+AV +SP+DC V+  YA FLW  E++  E
Sbjct: 170 LIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEEVEE 215

[Close]

BLAST of LsiUNG000260 vs. TAIR10
Match: AT1G80130.1 (AT1G80130.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-22
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 1


Query: 139 YYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWD 198
           YY E++  NP ++LL  NY KFL EV  D  +AEE   RAIL +  DG +L+LY  L+  
Sbjct: 168 YYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLILH 227

Query: 199 TQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAEAA 243
             +D++RA  Y+ +AV  SP DC V   YA FLW V++DE + A
Sbjct: 228 NHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEA 271

[Close]

BLAST of LsiUNG000260 vs. TAIR10
Match: AT1G04530.1 (AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 95.1 bits (235), Expect = 6.4e-20
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 1


Query: 130 GINDRKIRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELL 189
           G +D+    YY+ +L+  P   LLL+NY KFL E   D   AEE Y +  +  P+DG  L
Sbjct: 115 GYDDKNCGDYYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVAL 174

Query: 190 ALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDE 239
           A YG+LV    +D+ +A  YF+RAV ASP+D +V+  YA FLW++  D+
Sbjct: 175 ANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADD 222

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BLAST of LsiUNG000260 vs. NCBI nr
Match: gi|659132057|ref|XP_008465993.1| (PREDICTED: uncharacterized protein LOC103503559 [Cucumis melo])

HSP 1 Score: 339.3 bits (869), Expect = 5.6e-90
Identity = 186/257 (72.37%), Postives = 209/257 (81.32%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           MKSALLRTGSVP++SP   AS+   N +PLYGV SCH SS+SSP+ISLH        NNS
Sbjct: 1   MKSALLRTGSVPLLSPTTTASN---NKQPLYGVLSCHNSSASSPRISLHCT-----RNNS 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGVRSRS--RSFPSGIPEEEFLNEDE-FDSNSME 120
           + IRRAASESDI RSLHEVSN  DQ SG+ SRS  RSFPS IPEEEF++ED+ FDS+SME
Sbjct: 61  NRIRRAASESDIVRSLHEVSNTSDQFSGLASRSLSRSFPSKIPEEEFIDEDDQFDSDSME 120

Query: 121 DGAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYS 180
           +  +++   +  G+NDR KI AYYE +LKLNPSDALLLRNYGKFLHEV+ DT RAEECYS
Sbjct: 121 EDKEYL--NYRVGVNDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHEVVNDTKRAEECYS 180

Query: 181 RAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVED 240
           RAILASPTDGELLALYGKLVWDT+RDK+RAQYYFDRAVYASPNDCLV GHYAHF+WQVED
Sbjct: 181 RAILASPTDGELLALYGKLVWDTERDKQRAQYYFDRAVYASPNDCLVTGHYAHFMWQVED 240

Query: 241 DEAEAA--PPPAMVAAC 252
           DEA  A   P  MV AC
Sbjct: 241 DEAALAEDSPAGMVTAC 247

[Close]

BLAST of LsiUNG000260 vs. NCBI nr
Match: gi|449437232|ref|XP_004136396.1| (PREDICTED: uncharacterized protein LOC101218835 [Cucumis sativus])

HSP 1 Score: 330.1 bits (845), Expect = 3.4e-87
Identity = 184/251 (73.31%), Postives = 204/251 (81.27%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNK-PLYGVFSCHKSSSSSPK-ISLHFEINHRRGN 60
           MKSALLRTGSVP++SP    SSSFSNNK PLYG+FS H SS+SSP+ ISLH+       N
Sbjct: 1   MKSALLRTGSVPLLSPTTTPSSSFSNNKQPLYGLFSSHNSSTSSPRSISLHYCTR----N 60

Query: 61  NSSSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRS---FPSGIPEEEFLNEDE---FD 120
           +S+ IRRAASESDI RSLH+VSN  DQ SG+ SRSRS   FPS IPEEEFLNED    FD
Sbjct: 61  HSNHIRRAASESDIVRSLHQVSNTSDQFSGLASRSRSRSSFPSKIPEEEFLNEDHDQIFD 120

Query: 121 SNSMEDGAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRA 180
            +SME+   F+      GINDR KI AYYE +LKLNPSDALLLRNYGKFLHEV  D+ RA
Sbjct: 121 GDSMEEDKVFLNSPI--GINDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHEVANDSKRA 180

Query: 181 EECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFL 240
           EECYSRAILASPTDGELLALYGKLVWDTQRDK+RAQYYFDRAVYASPNDCLV GHYAHF+
Sbjct: 181 EECYSRAILASPTDGELLALYGKLVWDTQRDKQRAQYYFDRAVYASPNDCLVTGHYAHFM 240

Query: 241 WQVEDDEAEAA 243
           W+VE+DEA A+
Sbjct: 241 WEVEEDEAAAS 245

[Close]

BLAST of LsiUNG000260 vs. NCBI nr
Match: gi|590675480|ref|XP_007039460.1| (Tetratricopeptide repeat-like superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 138/300 (46.00%), Postives = 176/300 (58.67%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASS--SFSNNKPLYGVFSCHKSSSS--SPKISLHFEINHRR 60
           MK+ALLR GSVPV SPA  +S   S S    + G++SC ++  S  SP ISLHF +N R+
Sbjct: 1   MKAALLRAGSVPVPSPALCSSPKVSLSRQSSIGGIYSCERAGCSPCSPIISLHFPMNKRK 60

Query: 61  GNNS-SSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDE----- 120
              + + +RRA S++DI RS           S +   SR F +GIPEEE+L++ E     
Sbjct: 61  PKETHTHMRRALSDTDIIRS----------ESRIPGGSRCFRAGIPEEEYLSDGEVGREF 120

Query: 121 -------------FDSNSMEDGAK-----FVADTFSNG------------INDRKIRAYY 180
                        F+S   E G       F  D F NG             ++ KI  YY
Sbjct: 121 RTLVTGKGSDRASFESIWPEFGISMEEIGFSGDGFGNGGKSGGDHGDDSFGDESKIGDYY 180

Query: 181 EELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQ 240
            E+LKLNPSD+LLLRNYG+FLHEV KD  RAEE Y RAILASP DGE+L+LYGK +W+  
Sbjct: 181 REMLKLNPSDSLLLRNYGRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGKFIWERH 240

Query: 241 RDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDE----------AEAAPPPAMVAA 251
           RD+ RA+ YFDRAV ASP+DC+V+G YAHF+W+ E+DE          A+    PAMVAA
Sbjct: 241 RDETRAKSYFDRAVAASPDDCMVLGSYAHFMWESEEDEEQEQEEKEMGAQVGVSPAMVAA 290

[Close]

BLAST of LsiUNG000260 vs. NCBI nr
Match: gi|823151699|ref|XP_012475677.1| (PREDICTED: uncharacterized protein LOC105791919 [Gossypium raimondii])

HSP 1 Score: 204.1 bits (518), Expect = 2.8e-49
Identity = 133/274 (48.54%), Postives = 165/274 (60.22%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASS--SFSNNKPLYGVFSCHKS--SSSSPKISLHFEINHRR 60
           MK+A+LR GS+PV S A   S   S S       VF   +S  S SSP +SLHF ++ R+
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFPVERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GNNS-SSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDEFDSN- 120
              S + IRRA SE+DI +S           + V   SR F +GIPEEE++++ E D   
Sbjct: 61  PKESRAQIRRALSETDIIKS----------ETRVPGGSRCFTAGIPEEEYVSDYEIDGGF 120

Query: 121 ------SMED----------GAKFVADTFSNGIND-RKIRAYYEELLKLNPSDALLLRNY 180
                 SME+          G K   D   +   D RK+  YY E+LKLNP D LLLRNY
Sbjct: 121 RTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKRKMGDYYREMLKLNPGDPLLLRNY 180

Query: 181 GKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYAS 240
           G+FLHEV KD  RAEE Y RAILASP DGE+L+LYG L+W+  RD+ RA+ YFDRAV AS
Sbjct: 181 GRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGDLIWERHRDESRAKSYFDRAVTAS 240

Query: 241 PNDCLVIGHYAHFLWQV-EDDEAEAAPPPAMVAA 251
           P+DC+V+G YA+FLW   EDDE E     AMVAA
Sbjct: 241 PDDCMVLGSYANFLWDAEEDDEEEVEMSKAMVAA 264

[Close]

BLAST of LsiUNG000260 vs. NCBI nr
Match: gi|728838575|gb|KHG18018.1| (Adenosine monophosphate-protein transferase FICD [Gossypium arboreum])

HSP 1 Score: 203.4 bits (516), Expect = 4.8e-49
Identity = 133/274 (48.54%), Postives = 166/274 (60.58%), Query Frame = 1


Query: 1   MKSALLRTGSVPVISPAAAASS--SFSNNKPLYGVFSCHKS--SSSSPKISLHFEINHRR 60
           MK+A+LR GS+PV S A   S   S S       VFS  +S  S SSP +SLHF ++ R+
Sbjct: 1   MKAAILRAGSLPVTSSALPGSPKVSLSRQSSFGAVFSGERSGFSLSSPIVSLHFPMDKRK 60

Query: 61  GNNS-SSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDEFDSN- 120
              S + IRRA SE+DI +S           + V   SR F +GIPEEE++++ E D   
Sbjct: 61  PMESRAQIRRALSETDIIKS----------ETRVPGGSRCFTAGIPEEEYVSDYEIDGGC 120

Query: 121 ------SMED----------GAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNY 180
                 SME+          G K   D   +   D+ K+  YY E+LKLNP D LLLRNY
Sbjct: 121 RTEFGISMEEIGFSGDGFGTGGKIGGDNGDDSYGDKGKMGDYYREILKLNPGDPLLLRNY 180

Query: 181 GKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYAS 240
           G+FLHEV KD  RAEE Y RAILASP DGE+L+LYG L+W+  RD+ RA+ YFDRAV AS
Sbjct: 181 GRFLHEVEKDMERAEEYYGRAILASPGDGEVLSLYGNLIWERHRDESRAKSYFDRAVTAS 240

Query: 241 PNDCLVIGHYAHFLWQV-EDDEAEAAPPPAMVAA 251
           P+DC+V+G YA+FLW   EDDE E     AMVAA
Sbjct: 241 PDDCMVLGSYANFLWDAEEDDEEEVDMSKAMVAA 264

The following BLAST results are available for this feature:

BLAST of LsiUNG000260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of LsiUNG000260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH65_CUCSA	2.3e-87	73.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G901150 PE=4 SV=1	[more]
A0A061G302_THECC	1.2e-51	46.00	Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao G...	[more]
A0A0D2QZR9_GOSRA	1.9e-49	48.54	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G183900 PE=4 SV=1	[more]
A0A0B0NU07_GOSAR	3.3e-49	48.54	Adenosine monophosphate-protein transferase FICD OS=Gossypium arboreum GN=F383_2...	[more]
B9SNT4_RICCO	3.1e-47	47.46	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278170 PE=4 SV=1	[more]

BLAST of LsiUNG000260 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17940.1	8.1e-39	37.37	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G20190.1	1.9e-24	32.70	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G32340.1	5.6e-24	49.06	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G80130.1	3.1e-22	46.15	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G04530.1	6.4e-20	43.12	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of LsiUNG000260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132057\|ref\|XP_008465993.1\|	5.6e-90	72.37	PREDICTED: uncharacterized protein LOC103503559 [Cucumis melo]	[more]
gi\|449437232\|ref\|XP_004136396.1\|	3.4e-87	73.31	PREDICTED: uncharacterized protein LOC101218835 [Cucumis sativus]	[more]
gi\|590675480\|ref\|XP_007039460.1\|	1.7e-51	46.00	Tetratricopeptide repeat-like superfamily protein, putative [Theobroma cacao]	[more]
gi\|823151699\|ref\|XP_012475677.1\|	2.8e-49	48.54	PREDICTED: uncharacterized protein LOC105791919 [Gossypium raimondii]	[more]
gi\|728838575\|gb\|KHG18018.1\|	4.8e-49	48.54	Adenosine monophosphate-protein transferase FICD [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
LsiUNG000260.1	LsiUNG000260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 136..235 score: 4.3
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 138..237 score: 8.34
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 139..220 score: 10
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 100..240 score: 9.4
None	No IPR available	PANTHER	PTHR26312:SF53	CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN	coord: 100..240 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
LsiUNG000260	Csa3G901150	Cucumber (Chinese Long) v2	culsiB147
LsiUNG000260	CSPI03G46560	Wild cucumber (PI 183967)	cpilsiB146
LsiUNG000260	Cucsa.312970	Cucumber (Gy14) v1	cgylsiB500
LsiUNG000260	CmaCh19G002270	Cucurbita maxima (Rimu)	cmalsiB462
LsiUNG000260	CmaCh02G016230	Cucurbita maxima (Rimu)	cmalsiB529
LsiUNG000260	CmoCh02G016680	Cucurbita moschata (Rifu)	cmolsiB514
LsiUNG000260	CmoCh19G002410	Cucurbita moschata (Rifu)	cmolsiB447
LsiUNG000260	MELO3C003424	Melon (DHL92) v3.5.1	lsimeB002
LsiUNG000260	MELO3C003424.2	Melon (DHL92) v3.6.1	lsimedB002
LsiUNG000260	Cla97C09G174580	Watermelon (97103) v2	lsiwmbB006
LsiUNG000260	Bhi05G000312	Wax gourd	lsiwgoB002
LsiUNG000260	Cp4.1LG05g00170	Cucurbita pepo (Zucchini)	cpelsiB576
LsiUNG000260	Cp4.1LG15g02090	Cucurbita pepo (Zucchini)	cpelsiB190
LsiUNG000260	CsGy3G044000	Cucumber (Gy14) v2	cgyblsiB133
LsiUNG000260	Carg08849	Silver-seed gourd	carlsiB712
LsiUNG000260	Carg24530	Silver-seed gourd	carlsiB887
LsiUNG000260	CsaV3_3G049010	Cucumber (Chinese Long) v3	cuclsiB160

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
LsiUNG000260	Watermelon (97103) v2	lsiwmbB002
LsiUNG000260	Watermelon (97103) v2	lsiwmbB005
LsiUNG000260	Bottle gourd (USVL1VR-Ls)	lsilsiB000
LsiUNG000260	Cucumber (Gy14) v1	cgylsiB525
LsiUNG000260	Cucurbita maxima (Rimu)	cmalsiB297
LsiUNG000260	Cucurbita maxima (Rimu)	cmalsiB740
LsiUNG000260	Cucurbita moschata (Rifu)	cmolsiB285
LsiUNG000260	Cucurbita moschata (Rifu)	cmolsiB732
LsiUNG000260	Cucurbita pepo (Zucchini)	cpelsiB162
LsiUNG000260	Cucurbita pepo (Zucchini)	cpelsiB695
LsiUNG000260	Wild cucumber (PI 183967)	cpilsiB147
LsiUNG000260	Cucumber (Chinese Long) v2	culsiB148
LsiUNG000260	Melon (DHL92) v3.5.1	lsimeB004
LsiUNG000260	Watermelon (Charleston Gray)	lsiwcgB000
LsiUNG000260	Watermelon (Charleston Gray)	lsiwcgB001
LsiUNG000260	Watermelon (97103) v1	lsiwmB001
LsiUNG000260	Watermelon (97103) v1	lsiwmB002
LsiUNG000260	Cucumber (Gy14) v2	cgyblsiB134
LsiUNG000260	Melon (DHL92) v3.6.1	lsimedB004
LsiUNG000260	Silver-seed gourd	carlsiB450
LsiUNG000260	Silver-seed gourd	carlsiB880
LsiUNG000260	Cucumber (Chinese Long) v3	cuclsiB161