Carg24530-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24530-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tetratricopeptide-like helical
Location	Cucurbita_argyrosperma_scaffold_121 : 391298 .. 392375 (+)
Sequence length	874

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACCCAAAAAGGGAAAACGAAAGAAAACTCTGCCATTTCAAAACCTTCGCAAATTGCAGCTATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAATAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATAACGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGTGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTAATCGAAGTCTAGAATTATCAAATTGAAAGTCTGCTTTGATCTGAAATCCTGAAATTCTGAAATCTAATGGAATATCACACTTTAATTTCTTTGATTTGATTTGATTGATGATGTAAAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGTAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGGTAATTTTCGATATCTGGATCGAGCAGTTTAGCCCTAATTTCATGAACTGGAAGACTCTGAATGTTTGAATTTGTTTGTGAAGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCGGCTCTGGTTGCGGCGTTTTAA

mRNA sequence

AAAAACCCAAAAAGGGAAAACGAAAGAAAACTCTGCCATTTCAAAACCTTCGCAAATTGCAGCTATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAATAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATAACGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGTGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGTAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCGGCTCTGGTTGCGGCGTTTTAA

Coding sequence (CDS)

ATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAATAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATAACGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGTGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGTAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCGGCTCTGGTTGCGGCGTTTTAA

Protein sequence

MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNWSGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEEATAVAPAPAPALVAAF

Homology

[Close]

BLAST of Carg24530-RA vs. NCBI nr
Match: XP_022963763.1 (uncharacterized protein LOC111463957 [Cucurbita moschata])

HSP 1 Score: 346.7 bits (888), Expect = 7.2e-92
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
           SGIRRAASESDI+RSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120

Query: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 179
           FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE
Sbjct: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 178

[Close]

BLAST of Carg24530-RA vs. NCBI nr
Match: XP_023554672.1 (uncharacterized protein LOC111811867 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.8 bits (878), Expect = 1.0e-90
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
           SGIRRAASESDI+RSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHR SFADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRGSFADTE 120

Query: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 179
           FLNSGIVSGDGGDFVADKF+DGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE
Sbjct: 121 FLNSGIVSGDGGDFVADKFTDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 178

[Close]

BLAST of Carg24530-RA vs. NCBI nr
Match: XP_022967316.1 (uncharacterized protein LOC111466874 [Cucurbita maxima])

HSP 1 Score: 332.0 bits (850), Expect = 1.8e-87
Identity = 172/179 (96.09%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
           SGIRRAASESDI+RSLHEVSSPYDQFGGFRSRYWSVPS IPE+EFLNQDEFHRDS ADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120

Query: 121 FLNSGIVSGDGGDFVA-DKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 179
           FLNSGIVSGDGGDFVA DKF+DGSSESSKIRAYYEEMLKSNPSD LILRNYGKFLHEVE
Sbjct: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVE 179

[Close]

BLAST of Carg24530-RA vs. NCBI nr
Match: XP_022930988.1 (uncharacterized protein LOC111437316 [Cucurbita moschata])

HSP 1 Score: 225.7 bits (574), Expect = 1.9e-55
Identity = 121/181 (66.85%), Postives = 146/181 (80.66%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL+RTVS+PV+  +  ASSSFSNY+PL+G  +G  SS+SSPKISLHFE+N+ RG+N 
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGF--RSRYWSVPSEIPEDEFLNQDEFHRDSFA- 120
           SGIRRA+SESDI+RSLHEVS+PYDQFGG   RSR  S  SEIPE+EFLNQDEF  DS   
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEV 179
           D+  L+SGI   DG +F  D F DGS++ +KI AYYEE+LK NP+DAL+LRNYGKFLHEV
Sbjct: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

[Close]

BLAST of Carg24530-RA vs. NCBI nr
Match: XP_023532088.1 (uncharacterized protein LOC111794359 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.6 bits (571), Expect = 4.2e-55
Identity = 120/181 (66.30%), Postives = 146/181 (80.66%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL+RTVS+PV+  +  ASSSFSNY+PL+G  +G  SS+SSPKISLHFE+N+ RG+N 
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGF--RSRYWSVPSEIPEDEFLNQDEFHRDSFA- 120
           SGIRRA+SESDI+RSLHEVS+PYDQFGG   RSR  S  SEIPE+EFLNQDEF  DS   
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEV 179
           D+  L++GI   DG +F  D F DGS++ +KI AYYEE+LK NP+DAL+LRNYGKFLHEV
Sbjct: 121 DSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

[Close]

BLAST of Carg24530-RA vs. TAIR10
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10
Identity = 63/201 (31.34%), Postives = 91/201 (45.27%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPL-----YGALSGQNSSISSPKISLHFEINHR 60
           M+S L+RT S+PVL + + +  S     P+       +LS      +  KIS+  + N  
Sbjct: 1   MKSLLMRTGSMPVLQNRLISGGSSRKMTPISRTNSVESLSSYGERFAGGKISIEVKAN-- 60

Query: 61  RGKNWSGIRRAASESDITRS---LHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFH 120
                 G+RR  SESD+ RS   L  V S               P+ IPED+   ++E  
Sbjct: 61  -----VGMRRVLSESDVIRSERMLKRVGSK------------PSPARIPEDDEAGEEEIR 120

Query: 121 RDSFAD--TEFLNSGI------VSGDG-------GDFVADKFSDGSSESSKIRAYYEEML 179
              FAD     ++ G+       +G G                    + SKI  YY EML
Sbjct: 121 ---FADGWGSMISGGLPVEEKCFTGGGXXXXXXXXXXXXXXXXXXXEDKSKIGDYYREML 179

[Close]

BLAST of Carg24530-RA vs. TrEMBL
Match: tr|A0A1S3CQ68|A0A1S3CQ68_CUCME (uncharacterized protein LOC103503559 OS=Cucumis melo OX=3656 GN=LOC103503559 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.0e-33
Identity = 99/181 (54.70%), Postives = 118/181 (65.19%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL+RT SVP+LS    AS   +N +PLYG LS  NSS SSP+ISLH   N     N 
Sbjct: 1   MKSALLRTGSVPLLSPTTTAS---NNKQPLYGVLSCHNSSASSPRISLHCTRN-----NS 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYW--SVPSEIPEDEFLNQ-DEFHRDSF- 120
           + IRRAASESDI RSLHEVS+  DQF G  SR    S PS+IPE+EF+++ D+F  DS  
Sbjct: 61  NRIRRAASESDIVRSLHEVSNTSDQFSGLASRSLSRSFPSKIPEEEFIDEDDQFDSDSME 120

Query: 121 ADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHE 178
            D E+LN               +  G ++ SKI AYYE MLK NPSDAL+LRNYGKFLHE
Sbjct: 121 EDKEYLN---------------YRVGVNDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHE 158

[Close]

BLAST of Carg24530-RA vs. TrEMBL
Match: tr|A0A0A0LH65|A0A0A0LH65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901150 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.0e-33
Identity = 105/187 (56.15%), Postives = 119/187 (63.64%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYK-PLYGALSGQNSSISSPK-ISLHF-EINHRRG 60
           M+SAL+RT SVP+LS     SSSFSN K PLYG  S  NSS SSP+ ISLH+   NH   
Sbjct: 1   MKSALLRTGSVPLLSPTTTPSSSFSNNKQPLYGLFSSHNSSTSSPRSISLHYCTRNHS-- 60

Query: 61  KNWSGIRRAASESDITRSLHEVSSPYDQFGGFRSR---YWSVPSEIPEDEFLNQDE---F 120
              + IRRAASESDI RSLH+VS+  DQF G  SR     S PS+IPE+EFLN+D    F
Sbjct: 61  ---NHIRRAASESDIVRSLHQVSNTSDQFSGLASRSRSRSSFPSKIPEEEFLNEDHDQIF 120

Query: 121 HRDSF-ADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNY 178
             DS   D  FLNS I               G ++ SKI AYYE MLK NPSDAL+LRNY
Sbjct: 121 DGDSMEEDKVFLNSPI---------------GINDRSKIGAYYEHMLKLNPSDALLLRNY 167

[Close]

BLAST of Carg24530-RA vs. TrEMBL
Match: tr|A0A1R3I402|A0A1R3I402_COCAP (Tetratricopeptide-like helical OS=Corchorus capsularis OX=210143 GN=CCACVL1_15080 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 80/207 (38.65%), Postives = 102/207 (49.28%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAAS---SSFSNYKPLYGALSGQ---NSSISSPKISLHFEINH 60
           M++ L+R  SVPV S AV +S   SS S      G  SG+    SS  SP ISLHF  + 
Sbjct: 1   MKAVLLRAGSVPVSSQAVCSSPKVSSISRQSSFGGVCSGERAGGSSPCSPIISLHFRTDK 60

Query: 61  RRGK-NWSGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHR 120
           R+ K + S IRR AS++DI RS   +       GG R      P+ IPE+E+L+  E   
Sbjct: 61  RKPKESHSHIRRTASDTDIMRSDSRIP------GGSR----CFPAGIPEEEYLSDAEVDS 120

Query: 121 D----------------------SFADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRA 179
           +                        +  E   SG   G+GG    D   D   + +KI  
Sbjct: 121 EFRTLVKGKGSDRVSFPPIWPEFGISMEEIGFSGDGFGNGGKSGGDHGDDSFGDKNKIGD 180

[Close]

BLAST of Carg24530-RA vs. TrEMBL
Match: tr|A0A1R3JEP8|A0A1R3JEP8_9ROSI (Tetratricopeptide-like helical OS=Corchorus olitorius OX=93759 GN=COLO4_16996 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-16
Identity = 80/207 (38.65%), Postives = 102/207 (49.28%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAAS---SSFSNYKPLYGALSGQ---NSSISSPKISLHFEINH 60
           M++ L+R  SVPV S AV +S   SS S      G  SG+    SS  SP ISLHF  + 
Sbjct: 1   MKAVLLRAGSVPVPSQAVCSSPKVSSISRQSSFGGVCSGERAGGSSPCSPIISLHFRTDK 60

Query: 61  RRGK-NWSGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHR 120
           R+ K + S IRR AS++DI RS   +       GG R      P+ IPE+E+L+  E   
Sbjct: 61  RKPKESHSHIRRTASDTDIMRSDSRIP------GGSRCS----PAGIPEEEYLSDAEVDS 120

Query: 121 D----------------------SFADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRA 179
           +                        +  E   SG   G+GG    D   D   + +KI  
Sbjct: 121 EFRTLVKGKGSDRVSFPPIWPEFGISMEEIGFSGDGFGNGGKSGGDHGDDSFGDKNKIGD 180

[Close]

BLAST of Carg24530-RA vs. TrEMBL
Match: tr|A0A1S2YZT7|A0A1S2YZT7_CICAR (uncharacterized protein LOC101496058 OS=Cicer arietinum OX=3827 GN=LOC101496058 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.6e-16
Identity = 73/178 (41.01%), Postives = 89/178 (50.00%), Query Frame = 0


Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M ++LIRT SVPV +  +  S   S  +    A   +N  + SP++SLHF  N  +  N 
Sbjct: 1   MRASLIRTGSVPVQNWVLPGSPRISLTRQASFA-GDKNHHVQSPRLSLHFHSNCGKDTNP 60

Query: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
            GI RA SES        + SP + FG  R+              LN+   H     DT 
Sbjct: 61  EGINRALSES------AAIKSPSENFGFCRN--------------LNRIGTHYSPLQDTG 120

Query: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVE 179
           F   G    D GD        G  E  KI AYYEEMLKSNP+DAL+LRNYGKFLHEVE
Sbjct: 121 FFGGGC---DHGDTTVTTGGSG-GERIKIGAYYEEMLKSNPTDALLLRNYGKFLHEVE 153

The following BLAST results are available for this feature:

BLAST of Carg24530-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963763.1	7.2e-92	99.44	uncharacterized protein LOC111463957 [Cucurbita moschata]	[more]
XP_023554672.1	1.0e-90	98.31	uncharacterized protein LOC111811867 [Cucurbita pepo subsp. pepo]	[more]
XP_022967316.1	1.8e-87	96.09	uncharacterized protein LOC111466874 [Cucurbita maxima]	[more]
XP_022930988.1	1.9e-55	66.85	uncharacterized protein LOC111437316 [Cucurbita moschata]	[more]
XP_023532088.1	4.2e-55	66.30	uncharacterized protein LOC111794359 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg24530-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17940.1	2.2e-10	31.34	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg24530-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24530-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CQ68\|A0A1S3CQ68_CUCME	5.0e-33	54.70	uncharacterized protein LOC103503559 OS=Cucumis melo OX=3656 GN=LOC103503559 PE=...	[more]
tr\|A0A0A0LH65\|A0A0A0LH65_CUCSA	5.0e-33	56.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901150 PE=4 SV=1	[more]
tr\|A0A1R3I402\|A0A1R3I402_COCAP	2.5e-16	38.65	Tetratricopeptide-like helical OS=Corchorus capsularis OX=210143 GN=CCACVL1_1508...	[more]
tr\|A0A1R3JEP8\|A0A1R3JEP8_9ROSI	4.3e-16	38.65	Tetratricopeptide-like helical OS=Corchorus olitorius OX=93759 GN=COLO4_16996 PE...	[more]
tr\|A0A1S2YZT7\|A0A1S2YZT7_CICAR	9.6e-16	41.01	uncharacterized protein LOC101496058 OS=Cicer arietinum OX=3827 GN=LOC101496058 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24530	Carg24530	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24530-RA	Carg24530-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24530-RA.exon.1	Carg24530-RA.exon.1	exon
Carg24530-RA.exon.2	Carg24530-RA.exon.2	exon
Carg24530-RA.exon.3	Carg24530-RA.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24530-RA.five_prime_UTR.1	Carg24530-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24530-RA.CDS.1	Carg24530-RA.CDS.1	CDS
Carg24530-RA.CDS.2	Carg24530-RA.CDS.2	CDS
Carg24530-RA.CDS.3	Carg24530-RA.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 142..245 e-value: 7.3E-12 score: 46.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 151..252
None	No IPR available	PANTHER	PTHR26312:SF53	SUBFAMILY NOT NAMED	coord: 6..256
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 6..256
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 152..233 score: 11.181