Carg23814 (gene) Silver-seed gourd

Overview
NameCarg23814
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA polymerase epsilon subunit B like
LocationCucurbita_argyrosperma_scaffold_324 : 174496 .. 175007 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTAGCTTTGGAATTTGAAGATGATTTGTTCTTTGCTGATTTGAGCAGACAGCTTTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCATCCACATGTTTCTCTTCAGGTACACTTCCTTTTCCCAACATTTATATAGCTTAGCGATGGAGATGGGATTTAGTATTTTCAAATTTTCAATCACTTGGGTATTTCTCTCTGTTGGATTATATTTCTCTGTTTTGGCTGTGTAATCCAACAAGATCGATCAATTTGCAGGCTCTGTCTCATGGAGGGCACCACCCCACACGGCCACTGGCAGGGCATGAACATGCCACCATAGCCTACAGCAGCGTAAGCAAGGGCACCGGCGTGTTCATCCCAAGGTCCCTGCAGCCTGCAAGAAAACAGAGGCGTGGAAGAAACAATAACATGAAGCCAAACCGACAGTTTCAAATCAATATTGATGTGAACTCACAAGCATCTTCCAACAACCATTTGATGCGTCCTAAAAAGGGTTAA

mRNA sequence

ATGGAGGTAGCTTTGGAATTTGAAGATGATTTGTTCTTTGCTGATTTGAGCAGACAGCTTTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCATCCACATGTTTCTCTTCAGGCTCTGTCTCATGGAGGGCACCACCCCACACGGCCACTGGCAGGGCATGAACATGCCACCATAGCCTACAGCAGCGTAAGCAAGGGCACCGGCGTGTTCATCCCAAGGTCCCTGCAGCCTGCAAGAAAACAGAGGCGTGGAAGAAACAATAACATGAAGCCAAACCGACAGTTTCAAATCAATATTGATGTGAACTCACAAGCATCTTCCAACAACCATTTGATGCGTCCTAAAAAGGGTTAA

Coding sequence (CDS)

ATGGAGGTAGCTTTGGAATTTGAAGATGATTTGTTCTTTGCTGATTTGAGCAGACAGCTTTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCATCCACATGTTTCTCTTCAGGCTCTGTCTCATGGAGGGCACCACCCCACACGGCCACTGGCAGGGCATGAACATGCCACCATAGCCTACAGCAGCGTAAGCAAGGGCACCGGCGTGTTCATCCCAAGGTCCCTGCAGCCTGCAAGAAAACAGAGGCGTGGAAGAAACAATAACATGAAGCCAAACCGACAGTTTCAAATCAATATTGATGTGAACTCACAAGCATCTTCCAACAACCATTTGATGCGTCCTAAAAAGGGTTAA

Protein sequence

MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHATIAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLMRPKKG
Homology
[Close]
BLAST of Carg23814 vs. NCBI nr
Match: XP_022955970.1 (uncharacterized protein LOC111457805 [Cucurbita moschata] >XP_023528368.1 uncharacterized protein LOC111791310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 3.3e-60
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHAT 60
           MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHAT
Sbjct: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHAT 60

Query: 61  IAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLMRPKKG 120
           IAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLMRPKKG
Sbjct: 61  IAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLMRPKKG 120

[Close]
BLAST of Carg23814 vs. NCBI nr
Match: XP_022979518.1 (uncharacterized protein LOC111479199 [Cucurbita maxima] >XP_022979519.1 uncharacterized protein LOC111479199 [Cucurbita maxima])

HSP 1 Score: 233.0 bits (593), Expect = 5.2e-58
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHAT 60
           MEVALEFEDDLFFADLSRQLSLLLMDDNE+PLPHPHVSLQALSHGGHHPT+ LAGHEHAT
Sbjct: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEEPLPHPHVSLQALSHGGHHPTQLLAGHEHAT 60

Query: 61  IAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLMRPKKG 120
           +AYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLMRPKKG
Sbjct: 61  VAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLMRPKKG 120

[Close]
BLAST of Carg23814 vs. NCBI nr
Match: XP_008438708.1 (PREDICTED: uncharacterized protein LOC103483733 [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-49
Identity = 106/124 (85.48%), Postives = 111/124 (89.52%), Query Frame = 0 

Query: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHA- 60
           MEVALE EDDLFFADLSRQLSLLLMDDNEDPLP PHVSLQALSHG H+PTRPLA HEHA 
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPRPHVSLQALSHGVHYPTRPLATHEHAA 60

Query: 61  ---TIAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLMR 120
                AY+ VSKGTGVFIPRSLQPARKQRRGR+NN+KPNRQF I+IDVNSQ SSNNHLMR
Sbjct: 61  AAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVSSNNHLMR 120

[Close]
BLAST of Carg23814 vs. NCBI nr
Match: XP_004134148.1 (PREDICTED: uncharacterized protein LOC101209089 [Cucumis sativus] >KGN57011.1 hypothetical protein Csa_3G149910 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 4.4e-49
Identity = 105/125 (84.00%), Postives = 110/125 (88.00%), Query Frame = 0 

Query: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHA- 60
           MEVALE EDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHG H+PTRPLA HEHA 
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGVHYPTRPLATHEHAA 60

Query: 61  ----TIAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLM 120
                 AY+ VSKGTGVFIPRSLQPARKQRRGR+NN+KPNRQF I+IDVNSQ  SNNH M
Sbjct: 61  AAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVPSNNHSM 120

[Close]
BLAST of Carg23814 vs. NCBI nr
Match: XP_022933798.1 (uncharacterized protein LOC111441102 [Cucurbita moschata] >XP_022933806.1 uncharacterized protein LOC111441102 [Cucurbita moschata])

HSP 1 Score: 184.1 bits (466), Expect = 2.8e-43
Identity = 101/125 (80.80%), Postives = 106/125 (84.80%), Query Frame = 0 

Query: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLP-HPHVSLQALSHGGHHPTRPLAGHEHA 60
           MEVALE EDDLFFADLSRQLSLLLMDDNEDPLP HPHVSLQAL+HGGH P RPLA H+ A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 61  ----TIAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLM 120
                +AYS VSKGTGVFIPRSLQPARKQRRGR NN+K NRQF I IDVNSQ S+NN L 
Sbjct: 61  AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSL- 120

[Close]
BLAST of Carg23814 vs. TAIR10
Match: AT5G19190.1 (unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-10
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 0 

Query: 1  MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHAT 60
          M + LE +DD+FFAD+S+Q+SLL+MD++E   P   VSL + S           G++ A 
Sbjct: 1  MAMELELDDDVFFADISKQISLLIMDEDEHLNP---VSLSSSSSSLSFQGLFRGGYQTAP 60

Query: 61 IAY-SSVSKGTGVFIPRSLQPARK----QRRGR 89
            Y    SKGTGVFIP+S QP R+    Q++GR
Sbjct: 61 YMYQQEQSKGTGVFIPKSSQPRRRPHHHQKQGR 90

[Close]
BLAST of Carg23814 vs. TAIR10
Match: AT3G06070.1 (unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-10
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0 

Query: 1  MEVALEFEDDLFFADLSRQLSLLLMD-DNEDPLP-HPHVSLQALSHGGHHPTRPLAGHEH 60
          M + LE +DD+FFAD+S+QL+LL+ D D ++P+     VS Q L  G +  +       +
Sbjct: 1  MAMELELDDDVFFADISKQLNLLITDEDEQNPISLSSSVSFQGLFRGNYQTSATPYMMYN 60

Query: 61 ATIAYSSV--SKGTGVFIPRSLQPARK 84
            I Y+ +  SKGTGVFIPRS QP RK
Sbjct: 61 EQINYNVIRESKGTGVFIPRSSQPRRK 87

[Close]
BLAST of Carg23814 vs. TrEMBL
Match: tr|A0A1S3AX25|A0A1S3AX25_CUCME (uncharacterized protein LOC103483733 OS=Cucumis melo OX=3656 GN=LOC103483733 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.0e-49
Identity = 106/124 (85.48%), Postives = 111/124 (89.52%), Query Frame = 0 

Query: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHA- 60
           MEVALE EDDLFFADLSRQLSLLLMDDNEDPLP PHVSLQALSHG H+PTRPLA HEHA 
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPRPHVSLQALSHGVHYPTRPLATHEHAA 60

Query: 61  ---TIAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLMR 120
                AY+ VSKGTGVFIPRSLQPARKQRRGR+NN+KPNRQF I+IDVNSQ SSNNHLMR
Sbjct: 61  AAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVSSNNHLMR 120

[Close]
BLAST of Carg23814 vs. TrEMBL
Match: tr|A0A0A0LAE7|A0A0A0LAE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.9e-49
Identity = 105/125 (84.00%), Postives = 110/125 (88.00%), Query Frame = 0 

Query: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHA- 60
           MEVALE EDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHG H+PTRPLA HEHA 
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGVHYPTRPLATHEHAA 60

Query: 61  ----TIAYSSVSKGTGVFIPRSLQPARKQRRGRNNNMKPNRQFQINIDVNSQASSNNHLM 120
                 AY+ VSKGTGVFIPRSLQPARKQRRGR+NN+KPNRQF I+IDVNSQ  SNNH M
Sbjct: 61  AAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVPSNNHSM 120

[Close]
BLAST of Carg23814 vs. TrEMBL
Match: tr|A0A067KYS4|A0A067KYS4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02121 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 65/124 (52.42%), Postives = 77/124 (62.10%), Query Frame = 0 

Query: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLP-HPHVSLQALSHGGHHPTRPLAGHEHA 60
           MEVA+EFEDDL FADLS+Q+SLL+MDD+EDP+  +P VS Q  S G        A     
Sbjct: 1   MEVAMEFEDDLLFADLSKQISLLIMDDDEDPVANYPSVSFQDFSRGNCP-----AAASSF 60

Query: 61  TIAYSSVSKGTGVFIPRSLQPARKQRRGRN---NNMKPNRQFQINIDVNSQASSNNHLMR 120
                  SKGTGVFIPRS QP RK R+GR+   N+ K NR  Q N  + SQ S +N L  
Sbjct: 61  VCEQRRESKGTGVFIPRSSQPRRKDRQGRHSSFNSSKSNRLHQDNTRMVSQVSYSNSLY- 118

[Close]
BLAST of Carg23814 vs. TrEMBL
Match: tr|A0A2P2JDK4|A0A2P2JDK4_RHIMU (Uncharacterized protein LOC8271592 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.5e-16
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = 0 

Query: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPHPHVSLQALSHGGHHPTRPLAGHEHAT 60
           MEV++EFEDDLFFA+LS+Q+SLLL++D+EDP   P VS Q  S GG++ T P       T
Sbjct: 1   MEVSMEFEDDLFFAELSKQISLLLIEDDEDPTALPTVSFQG-SSGGNYATAPSPFWYQKT 60

Query: 61  IAYSSVSKGTGVFIPRSLQPARKQRRGRNN--NMKPNRQFQINIDVNSQASSNNHLMRPK 120
                 SKGTGVFIP+S QP RK R+G +   N K +RQ   N  + S+ S +N+  +P 
Sbjct: 61  CRRE--SKGTGVFIPQSFQPRRKHRQGSHGSYNSKSHRQHD-NTRMVSKVSHDNNSFKPN 118

[Close]
BLAST of Carg23814 vs. TrEMBL
Match: tr|A0A2P5E3M4|A0A2P5E3M4_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_006010 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 0 

Query: 1   MEVALEFEDDLFFADLSRQLSLLLMDDNEDPLPH-PHVSLQALSHGGHHPTRPLAGHEHA 60
           MEVA E EDDLFF DLS+Q+SLL+MDD+E+PL + P VSLQA SH  HH   P+      
Sbjct: 1   MEVAGEIEDDLFFKDLSKQISLLIMDDDEEPLANCPSVSLQAFSHVIHHHHPPVQSQYLY 60

Query: 61  TIAYSSVSKGTGVFIPRSLQPARKQRRGR--NNNMKPNRQFQINIDVNSQAS 110
                  SKGTGVFIP+S QP RKQR+GR  +++ +P     ++  V S  S
Sbjct: 61  EQTCRRESKGTGVFIPQSSQPRRKQRQGRFGSSHRQPENTKMVSQQVASDGS 112

The following BLAST results are available for this feature:
BLAST of Carg23814 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022955970.13.3e-60100.00uncharacterized protein LOC111457805 [Cucurbita moschata] >XP_023528368.1 unchar... [more]
XP_022979518.15.2e-5896.67uncharacterized protein LOC111479199 [Cucurbita maxima] >XP_022979519.1 uncharac... [more]
XP_008438708.11.5e-4985.48PREDICTED: uncharacterized protein LOC103483733 [Cucumis melo][more]
XP_004134148.14.4e-4984.00PREDICTED: uncharacterized protein LOC101209089 [Cucumis sativus] >KGN57011.1 hy... [more]
XP_022933798.12.8e-4380.80uncharacterized protein LOC111441102 [Cucurbita moschata] >XP_022933806.1 unchar... [more]
BLAST of Carg23814 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19190.14.9e-1044.09unknown protein[more]
AT3G06070.16.4e-1044.83unknown protein[more]
BLAST of Carg23814 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg23814 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AX25|A0A1S3AX25_CUCME1.0e-4985.48uncharacterized protein LOC103483733 OS=Cucumis melo OX=3656 GN=LOC103483733 PE=... [more]
tr|A0A0A0LAE7|A0A0A0LAE7_CUCSA2.9e-4984.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1[more]
tr|A0A067KYS4|A0A067KYS4_JATCU1.1e-1652.42Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02121 PE=4 SV=1[more]
tr|A0A2P2JDK4|A0A2P2JDK4_RHIMU9.5e-1649.18Uncharacterized protein LOC8271592 OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A2P5E3M4|A0A2P5E3M4_PARAD2.1e-1550.89Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_006010 PE... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23814-RACarg23814-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..114
NoneNo IPR availablePANTHERPTHR34956:SF2SUBFAMILY NOT NAMEDcoord: 1..118
NoneNo IPR availablePANTHERPTHR34956FAMILY NOT NAMEDcoord: 1..118

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg23814Cla021653Watermelon (97103) v1carwmB0211
Carg23814Csa3G149910Cucumber (Chinese Long) v2carcuB0250
Carg23814MELO3C006554Melon (DHL92) v3.5.1carmeB0228
Carg23814ClCG06G005870Watermelon (Charleston Gray)carwcgB0217
Carg23814ClCG05G005340Watermelon (Charleston Gray)carwcgB0216
Carg23814CSPI03G13390Wild cucumber (PI 183967)carcpiB0255
Carg23814Cucsa.254090Cucumber (Gy14) v1carcgyB0265
Carg23814CmaCh08G011640Cucurbita maxima (Rimu)carcmaB0310
Carg23814CmaCh06G014280Cucurbita maxima (Rimu)carcmaB0309
Carg23814CmaCh14G016850Cucurbita maxima (Rimu)carcmaB0307
Carg23814CmoCh08G011360Cucurbita moschata (Rifu)carcmoB0314
Carg23814CmoCh06G014310Cucurbita moschata (Rifu)carcmoB0313
Carg23814CmoCh14G017290Cucurbita moschata (Rifu)carcmoB0311
Carg23814Lsi05G014460Bottle gourd (USVL1VR-Ls)carlsiB200
Carg23814Lsi09G013490Bottle gourd (USVL1VR-Ls)carlsiB198
Carg23814Cp4.1LG03g10940Cucurbita pepo (Zucchini)carcpeB0317
Carg23814Cp4.1LG17g01300Cucurbita pepo (Zucchini)carcpeB0316
Carg23814Cp4.1LG08g04300Cucurbita pepo (Zucchini)carcpeB0318
Carg23814CsGy3G013510Cucumber (Gy14) v2carcgybB0239
Carg23814CsaV3_3G013590Cucumber (Chinese Long) v3carcucB0254
Carg23814Cla97C05G086650Watermelon (97103) v2carwmbB0225
Carg23814Bhi12G001608Wax gourdcarwgoB0276
Carg23814Bhi01G000620Wax gourdcarwgoB0277
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg23814Carg05445Silver-seed gourdcarcarB078
Carg23814Carg15920Silver-seed gourdcarcarB257
Carg23814Carg17404Silver-seed gourdcarcarB258
The following block(s) are covering this gene:
GeneOrganismBlock
Carg23814Cucurbita moschata (Rifu)carcmoB0312
Carg23814Cucurbita pepo (Zucchini)carcpeB0315
Carg23814Melon (DHL92) v3.5.1carmeB0227
Carg23814Melon (DHL92) v3.6.1carmedB0234
Carg23814Melon (DHL92) v3.6.1carmedB0235
Carg23814Watermelon (97103) v1carwmB0212
Carg23814Watermelon (97103) v2carwmbB0226
Carg23814Cucurbita maxima (Rimu)carcmaB0308