Cp4.1LG17g01300 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG17g01300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionOdontogenic ameloblast-associated
LocationCp4.1LG17 : 823723 .. 824520 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTAAACCTTACTTCAAACTTCAAATCAAGCAAACCAACCACTCTTTTTCTTCCTTCCCTTTTCACTTTTTGCTTTGTTTTCGAGGATTCGAGATGGAAACCGAAGTCGACGATGATGATTTGTTGTTTGCCGAGCTCACGAGGCGGATTTCGCTTCTCATTATGGACGACGACGAGTTTCCGAGCGTTCATACGGTTCGTTTCATCTCCCTTCACGAACAATTAGTCTTATATTTGTTTAATGTTTAAAATGCTTCCAGGGTTGGTTAATATGGTAATTGATCGACTTGTTACTTTGAAGTATTTTTAAATGGGTATGGTATCTATAGGCTCGATCTCCGGTGTTTAGTCGGGATATAAAGTACAAAGCTCAAATACCTTAAAAAAATTTAGGGACTAAACATGTCATTAAACATATTAATTATTAACGTTTTTGCAGGATTTGAGTCGGACAATTCACCGAGTCCGACCTGGGCAATTGCCATTAATGGTGGATTACGAGAATGGCTTTGCAAGGGAGAGCAAAGGTACTGGAGTTTTCATCCCGACACGGTTGCCATCACCAAAGAGGAAGCATAGAAATGTCGTGGGCTACAGAATCAAGTCGGAAAATAAGAGACTCAATTCTCAACCGTCCTCGACCTATTATTTTAAGCCCAAAAAGAGTTGAGCTTAGACATTTTCTTTATCGTTTCTAAATATTTCTAAGTTTTATTTGTGTATTAACATTTAATTATTTATTATATTAGTTCATGTGAGATAGTGATATGCTGGTTATGTCCCTTATGAAATAAAG

mRNA sequence

TATTTAAACCTTACTTCAAACTTCAAATCAAGCAAACCAACCACTCTTTTTCTTCCTTCCCTTTTCACTTTTTGCTTTGTTTTCGAGGATTCGAGATGGAAACCGAAGTCGACGATGATGATTTGTTGTTTGCCGAGCTCACGAGGCGGATTTCGCTTCTCATTATGGACGACGACGAGTTTCCGAGCGTTCATACGGATTTGAGTCGGACAATTCACCGAGTCCGACCTGGGCAATTGCCATTAATGGTGGATTACGAGAATGGCTTTGCAAGGGAGAGCAAAGGTACTGGAGTTTTCATCCCGACACGGTTGCCATCACCAAAGAGGAAGCATAGAAATGTCGTGGGCTACAGAATCAAGTCGGAAAATAAGAGACTCAATTCTCAACCGTCCTCGACCTATTATTTTAAGCCCAAAAAGAGTTGAGCTTAGACATTTTCTTTATCGTTTCTAAATATTTCTAAGTTTTATTTGTGTATTAACATTTAATTATTTATTATATTAGTTCATGTGAGATAGTGATATGCTGGTTATGTCCCTTATGAAATAAAG

Coding sequence (CDS)

ATGGAAACCGAAGTCGACGATGATGATTTGTTGTTTGCCGAGCTCACGAGGCGGATTTCGCTTCTCATTATGGACGACGACGAGTTTCCGAGCGTTCATACGGATTTGAGTCGGACAATTCACCGAGTCCGACCTGGGCAATTGCCATTAATGGTGGATTACGAGAATGGCTTTGCAAGGGAGAGCAAAGGTACTGGAGTTTTCATCCCGACACGGTTGCCATCACCAAAGAGGAAGCATAGAAATGTCGTGGGCTACAGAATCAAGTCGGAAAATAAGAGACTCAATTCTCAACCGTCCTCGACCTATTATTTTAAGCCCAAAAAGAGTTGA

Protein sequence

METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFARESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS
BLAST of Cp4.1LG17g01300 vs. TrEMBL
Match: A0A0A0KGT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G153490 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.2e-39
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 1

Query: 1   METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFAR 60
           ME EV+ DDLLFAELTRRISLLIMDDDE P  HT+ +RT+H++RP +LPLM+DYENGF R
Sbjct: 1   MEMEVESDDLLFAELTRRISLLIMDDDELPIAHTNFTRTVHQLRPRELPLMMDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPSPKRKHRNV-VGYRIKSENKRLNSQPSSTYYFKPK 109
           ESKGTGVFIP RLP  KRK +NV  GYRIKSENKRLN QPS TYY KPK
Sbjct: 61  ESKGTGVFIPARLPPRKRKQKNVTAGYRIKSENKRLNGQPSPTYYCKPK 109

BLAST of Cp4.1LG17g01300 vs. TrEMBL
Match: A0A103XMP0_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004374 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-10
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 1

Query: 4   EVDDDDLLFAELTRRISLLIMDDDEFPSVHTD------LSRTIHRVRPGQLPLMVDYENG 63
           EV +DDL FA+L++RISLLIMDDDE P++H        +S+TIH +   Q+P + D +NG
Sbjct: 67  EVIEDDLFFADLSKRISLLIMDDDEDPTLHCPPVSFQVISQTIHPIH-HQVPSLHD-QNG 126

Query: 64  FARESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQ 99
             RE KGTGVFIP    + + KH      R KS N R+ +Q
Sbjct: 127 -RREIKGTGVFIPQSSTNRRSKHS-----RSKSSNTRIQTQ 159

BLAST of Cp4.1LG17g01300 vs. TrEMBL
Match: M5XMB2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013511mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-09
Identity = 55/117 (47.01%), Postives = 64/117 (54.70%), Query Frame = 1

Query: 7   DDDLLFAELTRRISLLIMDDDE-----FPSVHTD-LSRTIHRVRPGQLPLMVDYENGFAR 66
           +DDL FA+LTR+ISLLIMDDDE      PSV     S  IH   P   P  + YE    R
Sbjct: 5   EDDLFFADLTRQISLLIMDDDEDPVATCPSVSLQAFSCAIH--HPPAQPTSL-YEQSRRR 64

Query: 67  ESKGTGVFIPTRLPSPKRKHR--NVVGYRIKS-------ENKRLNSQPSSTYYFKPK 109
           E+KGTGVFIP +   P+RKHR      Y  KS        +KR  SQ SS   F+PK
Sbjct: 65  ETKGTGVFIP-QSSQPRRKHRQGRFASYNTKSHRSSQTDHHKRTVSQVSSDCAFRPK 117

BLAST of Cp4.1LG17g01300 vs. TrEMBL
Match: A0A0B2P2G9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_004481 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 1

Query: 1   METEVD-DDDLLFAELTRRISLLIMDDDEFP-------SVHTDLSRTIHRVRPGQLPLMV 60
           ME  V+ ++DL FA+L+++ISLLIMD+DE P       S+ T      H   P Q   + 
Sbjct: 1   MEVAVELENDLFFADLSKQISLLIMDEDEDPLATCPPDSLQTFSGSIYH---PPQSAFL- 60

Query: 61  DYENGFARESKGTGVFIPTRLPSPKRKHR-----NVVGYRIKSENKRLNSQPSSTYYFKP 109
            YE    R+SKGTGVFIP +   P+RKHR     +   YR +S++ R  SQ   T  FKP
Sbjct: 61  -YEQALIRQSKGTGVFIP-QSTQPRRKHRKGRSSSNAKYRKQSQDTRTVSQVPITSSFKP 115

BLAST of Cp4.1LG17g01300 vs. TrEMBL
Match: I1MR77_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G015900 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 1

Query: 1   METEVD-DDDLLFAELTRRISLLIMDDDEFP-------SVHTDLSRTIHRVRPGQLPLMV 60
           ME  V+ ++DL FA+L+++ISLLIMD+DE P       S+ T      H   P Q   + 
Sbjct: 1   MEVAVELENDLFFADLSKQISLLIMDEDEDPLATCPPDSLQTFSGSIYH---PPQSAFL- 60

Query: 61  DYENGFARESKGTGVFIPTRLPSPKRKHR-----NVVGYRIKSENKRLNSQPSSTYYFKP 109
            YE    R+SKGTGVFIP +   P+RKHR     +   YR +S++ R  SQ   T  FKP
Sbjct: 61  -YEQALIRQSKGTGVFIP-QSTQPRRKHRKGRSSSNAKYRKQSQDTRTVSQVPITSSFKP 115

BLAST of Cp4.1LG17g01300 vs. TAIR10
Match: AT3G06070.1 (AT3G06070.1 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.6e-07
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1

Query: 1  METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQ-----LPLMVDYE 60
          ME E+ DDD+ FA+++++++LLI D+DE   +    S +   +  G       P M+  E
Sbjct: 3  MELEL-DDDVFFADISKQLNLLITDEDEQNPISLSSSVSFQGLFRGNYQTSATPYMMYNE 62

Query: 61 N---GFARESKGTGVFIPTRLPSPKRKHRN 83
                 RESKGTGVFIP R   P+RKH +
Sbjct: 63 QINYNVIRESKGTGVFIP-RSSQPRRKHNH 90

BLAST of Cp4.1LG17g01300 vs. TAIR10
Match: AT5G19190.1 (AT5G19190.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-06
Identity = 38/101 (37.62%), Postives = 53/101 (52.48%), Query Frame = 1

Query: 1  METEVDDDDLLFAELTRRISLLIMDDDE------FPSVHTDLS-RTIHRVRPGQLPLMVD 60
          ME E+DDD + FA+++++ISLLIMD+DE        S  + LS + + R      P M  
Sbjct: 3  MELELDDD-VFFADISKQISLLIMDEDEHLNPVSLSSSSSSLSFQGLFRGGYQTAPYMYQ 62

Query: 61 YENGFARESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKR 95
           E     +SKGTGVFIP      +R H +    R  S N +
Sbjct: 63 QE-----QSKGTGVFIPKSSQPRRRPHHHQKQGRYSSFNAK 97

BLAST of Cp4.1LG17g01300 vs. NCBI nr
Match: gi|449463088|ref|XP_004149266.1| (PREDICTED: uncharacterized protein LOC101220151 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 7.4e-39
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 1

Query: 1   METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFAR 60
           ME EV+ DDLLFAELTRRISLLIMDDDE P  HT+ +RT+H++RP +LPLM+DYENGF R
Sbjct: 1   MEMEVESDDLLFAELTRRISLLIMDDDELPIAHTNFTRTVHQLRPRELPLMMDYENGFVR 60

Query: 61  ESKGTGVFIPTRLPSPKRKHRNV-VGYRIKSENKRLNSQPSSTYYFKPK 109
           ESKGTGVFIP RLP  KRK +NV  GYRIKSENKRLN QPS TYY KPK
Sbjct: 61  ESKGTGVFIPARLPPRKRKQKNVTAGYRIKSENKRLNGQPSPTYYCKPK 109

BLAST of Cp4.1LG17g01300 vs. NCBI nr
Match: gi|659117368|ref|XP_008458565.1| (PREDICTED: uncharacterized protein LOC103497931 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-36
Identity = 81/108 (75.00%), Postives = 93/108 (86.11%), Query Frame = 1

Query: 4   EVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFARESK 63
           EV++DDLLFAELTRRISLLIMDDDE P V+T+ +RT+H++RP +LPL +DYENGF RESK
Sbjct: 2   EVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRESK 61

Query: 64  GTGVFIPTRLPSPKRKHRN-VVGYRIKSENKRLNS--QPSSTYYFKPK 109
           GTGVFIPTRLP PKRK +N  VGYRIKSENKRLN+  QPS  YY KPK
Sbjct: 62  GTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK 109

BLAST of Cp4.1LG17g01300 vs. NCBI nr
Match: gi|694374710|ref|XP_009364198.1| (PREDICTED: uncharacterized protein LOC103954119 [Pyrus x bretschneideri])

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 53/116 (45.69%), Postives = 67/116 (57.76%), Query Frame = 1

Query: 7   DDDLLFAELTRRISLLIMDDDE-----FPSVHTDLSRTIHRVRPGQLPLMVDYENGFARE 66
           +DDL FA+LT++ISLLIMDD+E     +PSV   L    + +RP   P+ + YE    RE
Sbjct: 9   EDDLFFADLTKQISLLIMDDEEDPMATYPSV--SLQAFSYAIRPPAHPVFL-YEQSCRRE 68

Query: 67  SKGTGVFIPTRLPSPKRKHR--NVVGYRIKS-------ENKRLNSQPSSTYYFKPK 109
           +KGTGVFIP    S +RKHR      Y  KS        NKR+ SQ SS   F+PK
Sbjct: 69  TKGTGVFIPQSTHS-RRKHRQGRFASYNPKSHRSSQADHNKRMVSQVSSVCAFRPK 120

BLAST of Cp4.1LG17g01300 vs. NCBI nr
Match: gi|976905995|gb|KVH93574.1| (hypothetical protein Ccrd_004374 [Cynara cardunculus var. scolymus])

HSP 1 Score: 72.0 bits (175), Expect = 7.2e-10
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 1

Query: 4   EVDDDDLLFAELTRRISLLIMDDDEFPSVHTD------LSRTIHRVRPGQLPLMVDYENG 63
           EV +DDL FA+L++RISLLIMDDDE P++H        +S+TIH +   Q+P + D +NG
Sbjct: 67  EVIEDDLFFADLSKRISLLIMDDDEDPTLHCPPVSFQVISQTIHPIH-HQVPSLHD-QNG 126

Query: 64  FARESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQ 99
             RE KGTGVFIP    + + KH      R KS N R+ +Q
Sbjct: 127 -RREIKGTGVFIPQSSTNRRSKHS-----RSKSSNTRIQTQ 159

BLAST of Cp4.1LG17g01300 vs. NCBI nr
Match: gi|657996933|ref|XP_008390842.1| (PREDICTED: uncharacterized protein LOC103453081 [Malus domestica])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 53/116 (45.69%), Postives = 67/116 (57.76%), Query Frame = 1

Query: 7   DDDLLFAELTRRISLLIMDDDE-----FPSVHTDLSRTIHRVRPGQLPLMVDYENGFARE 66
           +DDL FAELT++ISLLIMDD+E     +PSV   L      + P   P+++ YE+   RE
Sbjct: 9   EDDLFFAELTKQISLLIMDDEEDPIATYPSV--SLQAFSCAIHPPAHPVLL-YEHSCRRE 68

Query: 67  SKGTGVFIPTRLPSPKRKHR--NVVGYRIKS-------ENKRLNSQPSSTYYFKPK 109
           +KGTGVFIP    S +RKHR      Y  KS        NKR+ SQ SS   F+PK
Sbjct: 69  TKGTGVFIPQSTHS-RRKHRQGRFASYNPKSHGSSQADHNKRMVSQVSSDCAFRPK 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGT1_CUCSA5.2e-3976.15Uncharacterized protein OS=Cucumis sativus GN=Csa_6G153490 PE=4 SV=1[more]
A0A103XMP0_CYNCS5.0e-1047.52Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004374 PE=4 ... [more]
M5XMB2_PRUPE4.3e-0947.01Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013511mg PE=4 SV=1[more]
A0A0B2P2G9_GLYSO2.8e-0842.15Uncharacterized protein OS=Glycine soja GN=glysoja_004481 PE=4 SV=1[more]
I1MR77_SOYBN2.8e-0842.15Uncharacterized protein OS=Glycine max GN=GLYMA_17G015900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G06070.13.6e-0738.89 unknown protein[more]
AT5G19190.15.2e-0637.62 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449463088|ref|XP_004149266.1|7.4e-3976.15PREDICTED: uncharacterized protein LOC101220151 [Cucumis sativus][more]
gi|659117368|ref|XP_008458565.1|2.0e-3675.00PREDICTED: uncharacterized protein LOC103497931 [Cucumis melo][more]
gi|694374710|ref|XP_009364198.1|3.3e-1045.69PREDICTED: uncharacterized protein LOC103954119 [Pyrus x bretschneideri][more]
gi|976905995|gb|KVH93574.1|7.2e-1047.52hypothetical protein Ccrd_004374 [Cynara cardunculus var. scolymus][more]
gi|657996933|ref|XP_008390842.1|1.2e-0945.69PREDICTED: uncharacterized protein LOC103453081 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045454 cell redox homeostasis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016491 oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g01300.1Cp4.1LG17g01300.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34956FAMILY NOT NAMEDcoord: 1..110
score: 1.5

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g01300Silver-seed gourdcarcpeB1059
Cp4.1LG17g01300Cucumber (Chinese Long) v3cpecucB0427
Cp4.1LG17g01300Wax gourdcpewgoB0405
Cp4.1LG17g01300Cucurbita pepo (Zucchini)cpecpeB169
Cp4.1LG17g01300Cucurbita pepo (Zucchini)cpecpeB259
Cp4.1LG17g01300Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG17g01300Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG17g01300Cucumber (Gy14) v1cgycpeB0676
Cp4.1LG17g01300Cucurbita maxima (Rimu)cmacpeB268
Cp4.1LG17g01300Cucurbita maxima (Rimu)cmacpeB824
Cp4.1LG17g01300Cucurbita maxima (Rimu)cmacpeB918
Cp4.1LG17g01300Cucurbita moschata (Rifu)cmocpeB230
Cp4.1LG17g01300Cucurbita moschata (Rifu)cmocpeB351
Cp4.1LG17g01300Cucurbita moschata (Rifu)cmocpeB777
Cp4.1LG17g01300Wild cucumber (PI 183967)cpecpiB312
Cp4.1LG17g01300Wild cucumber (PI 183967)cpecpiB349
Cp4.1LG17g01300Cucumber (Chinese Long) v2cpecuB310
Cp4.1LG17g01300Cucumber (Chinese Long) v2cpecuB348
Cp4.1LG17g01300Bottle gourd (USVL1VR-Ls)cpelsiB265
Cp4.1LG17g01300Bottle gourd (USVL1VR-Ls)cpelsiB269
Cp4.1LG17g01300Bottle gourd (USVL1VR-Ls)cpelsiB273
Cp4.1LG17g01300Watermelon (Charleston Gray)cpewcgB282
Cp4.1LG17g01300Watermelon (Charleston Gray)cpewcgB293
Cp4.1LG17g01300Watermelon (97103) v1cpewmB314
Cp4.1LG17g01300Watermelon (97103) v1cpewmB331
Cp4.1LG17g01300Watermelon (97103) v1cpewmB326
Cp4.1LG17g01300Watermelon (97103) v1cpewmB334
Cp4.1LG17g01300Melon (DHL92) v3.5.1cpemeB316
Cp4.1LG17g01300Cucumber (Gy14) v2cgybcpeB354
Cp4.1LG17g01300Melon (DHL92) v3.6.1cpemedB351
Cp4.1LG17g01300Melon (DHL92) v3.6.1cpemedB371