MELO3C021409 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021409
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	NADH-ubiquinone oxidoreductase chain 5
Location	chr11 : 26755222 .. 26756294 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTTCTTCTTCCTTTCTTCTCTCCAATTGGATAACATAACATAATAAAACATCAATTTTCAGTTTCAATTTTGTCTTTTCGTACACAATTTTTGCCTAGCTGCCTTTGTCTTTTCATGTTCCCTTCTTGCTCTTTCACTTTTTTCTTTTCCCTATTTAAACCTTAGTTGGAAATGATATCAAACCAAAGTATAGTTCTCTTTTTTTTTTTGTTCTAGCATTTGAGTTGGAAATGGAAGTTGAAAATGATGATTTGTTGTTTGCTGAGCTTACTAGAAGGATTTCGCTTCTCATTATGGATGACGACGAGCTTCCGATCGTTAATACGGTTTGTTTTACCTCCTTTGTTTAGCTCTAAAATGGTTTGATTTTTTTCTTTTAAACATGAATGTGGAATGACTTCTAAAATTGTGTTTAATTTTGTGTTTGTTTATTGTTTAAGAAATCTATATTGTTTATAATGTGTTTACGAACCCCCTAAGCACTTCTCAAAATCAAATGTAACAACTGCTATATACTAATATAACAGAAAATCTAAAGCTTTCTGGAAAAGTAGTTTGATTGGATATTTACCATTGCAAAATTTAGTTAGGTTGAAAGTTTAGATACTTAAGAAGCTAAAAACTCTCCATTGTTTTTTTAGAGACCACACTTGTAACTTGACATACTATTAATGTTTCAGAACTTTACTAGAACAGTACATCAACTTCGACCTAGGGAATTACCATTAACGATGGATTACGAGAATGGGTTCGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCAACACGGTTGCCACCACCAAAGAGGAAACAGAAGAATGCGACTGTTGGTTATAGAATTAAATCAGAAAACAAGAGGCTCAATAATAATCGTCAACCATCTCCAATGTATTATTGTAAGCCCAAATAGGGTTAAGCTCATCATTTTCTAATTATTTCAAGTTTTAATTCTATATTAATATTTAATTATTTTATAAATTCGTGTGTGATAGTGACATGTTTGAGTAACGGTCACTTATAAAATAAAGCTATGTAGAATTTTAATTAGAAGGGTTAAGCAAACTAT

mRNA sequence

TGTCTTCTTCTTCCTTTCTTCTCTCCAATTGGATAACATAACATAATAAAACATCAATTTTCAGTTTCAATTTTGTCTTTTCGTACACAATTTTTGCCTAGCTGCCTTTGTCTTTTCATGTTCCCTTCTTGCTCTTTCACTTTTTTCTTTTCCCTATTTAAACCTTAGTTGGAAATGATATCAAACCAAAGTATAGTTCTCTTTTTTTTTTTGTTCTAGCATTTGAGTTGGAAATGGAAGTTGAAAATGATGATTTGTTGTTTGCTGAGCTTACTAGAAGGATTTCGCTTCTCATTATGGATGACGACGAGCTTCCGATCGTTAATACGAACTTTACTAGAACAGTACATCAACTTCGACCTAGGGAATTACCATTAACGATGGATTACGAGAATGGGTTCGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCAACACGGTTGCCACCACCAAAGAGGAAACAGAAGAATGCGACTGTTGGTTATAGAATTAAATCAGAAAACAAGAGGCTCAATAATAATCGTCAACCATCTCCAATGTATTATTGTAAGCCCAAATAGGGTTAAGCTCATCATTTTCTAATTATTTCAAGTTTTAATTCTATATTAATATTTAATTATTTTATAAATTCGTGTGTGATAGTGACATGTTTGAGTAACGGTCACTTATAAAATAAAGCTATGTAGAATTTTAATTAGAAGGGTTAAGCAAACTAT

Coding sequence (CDS)

ATGGAAGTTGAAAATGATGATTTGTTGTTTGCTGAGCTTACTAGAAGGATTTCGCTTCTCATTATGGATGACGACGAGCTTCCGATCGTTAATACGAACTTTACTAGAACAGTACATCAACTTCGACCTAGGGAATTACCATTAACGATGGATTACGAGAATGGGTTCGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCAACACGGTTGCCACCACCAAAGAGGAAACAGAAGAATGCGACTGTTGGTTATAGAATTAAATCAGAAAACAAGAGGCTCAATAATAATCGTCAACCATCTCCAATGTATTATTGTAAGCCCAAATAG

Protein sequence

MEVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRESKGTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK*

Homology

[Close]

BLAST of MELO3C021409 vs. TrEMBL
Match: A0A0A0KGT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G153490 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-47
Identity = 97/109 (88.99%), Postives = 99/109 (90.83%), Query Frame = 1


Query: 1   MEVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRES 60
           MEVE+DDLLFAELTRRISLLIMDDDELPI +TNFTRTVHQLRPRELPL MDYENGFVRES
Sbjct: 3   MEVESDDLLFAELTRRISLLIMDDDELPIAHTNFTRTVHQLRPRELPLMMDYENGFVRES 62

Query: 61  KGTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK 110
           KGTGVFIP RLPP KRKQKN T GYRIKSENKRLN   QPSP YYCKPK
Sbjct: 63  KGTGVFIPARLPPRKRKQKNVTAGYRIKSENKRLNG--QPSPTYYCKPK 109

[Close]

BLAST of MELO3C021409 vs. TrEMBL
Match: M5XMB2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013511mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 41/95 (43.16%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1  MEVENDDLLFAELTRRISLLIMDDDELPIVN------TNFTRTVHQLRPRELPLTMDYEN 60
          ME   DDL FA+LTR+ISLLIMDDDE P+          F+  +H   P   P ++ YE 
Sbjct: 1  MEKLEDDLFFADLTRQISLLIMDDDEDPVATCPSVSLQAFSCAIH--HPPAQPTSL-YEQ 60

Query: 61 GFVRESKGTGVFIPTRLPPPKRKQKNATVGYRIKS 90
             RE+KGTGVFIP    P ++ ++     Y  KS
Sbjct: 61 SRRRETKGTGVFIPQSSQPRRKHRQGRFASYNTKS 92

[Close]

BLAST of MELO3C021409 vs. TrEMBL
Match: A0A103XMP0_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004374 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-07
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 1


Query: 1   MEVENDDLLFAELTRRISLLIMDDDELPIVNTN------FTRTVHQLRPRELPLTMDYEN 60
           MEV  DDL FA+L++RISLLIMDDDE P ++         ++T+H +   ++P   D +N
Sbjct: 66  MEVIEDDLFFADLSKRISLLIMDDDEDPTLHCPPVSFQVISQTIHPIH-HQVPSLHD-QN 125

Query: 61  GFVRESKGTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNR 99
           G  RE KGTGVFIP       R+ K++    R KS N R+   R
Sbjct: 126 G-RREIKGTGVFIPQ--SSTNRRSKHS----RSKSSNTRIQTQR 160

[Close]

BLAST of MELO3C021409 vs. TrEMBL
Match: W9R5M3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007345 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-07
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 2   EVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPREL--PLTMD--YENGFV 61
           E+E DDL FA+L+++ISLLIMDDDE P+ +   + ++HQ    E+  P+     YE    
Sbjct: 6   EIE-DDLFFADLSKQISLLIMDDDEDPLAHCP-SVSLHQAFSCEIHPPVQTQFLYEQICR 65

Query: 62  RESKGTGVFIPTRLPPPK-RKQKNATVGYRIKSENKRLNNNRQ 100
           RESKGTGVFIP +  P +  KQ++   G    ++++R+  ++Q
Sbjct: 66  RESKGTGVFIPQQTQPRRNNKQRHGRFGNSYYAKSQRVQQHQQ 106

[Close]

BLAST of MELO3C021409 vs. TrEMBL
Match: D7T6S8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02830 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-07
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 1   MEVENDDLLFAELTRRISLLIMDDDELPIVN------TNFTRTVHQLRPRELPLTMDYEN 60
           ME+E DDL F +L+++ISLLIMDDDE P+          F+R +H     + P+   ++ 
Sbjct: 5   MEIE-DDLFFQDLSKQISLLIMDDDEDPVARCPSVSLQAFSRVIHP--STQYPIL--HDQ 64

Query: 61  GFVRESKGTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYY 106
              RESKGTGVFIP R   P+RK +            ++ +N R  S + Y
Sbjct: 65  NCRRESKGTGVFIP-RSSQPRRKNRQGRFNSSNTKSQRQPDNTRGVSHLSY 109

[Close]

BLAST of MELO3C021409 vs. TAIR10
Match: AT3G06070.1 (AT3G06070.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-06
Identity = 39/131 (29.77%), Postives = 62/131 (47.33%), Query Frame = 1


Query: 1   MEVE-NDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQL-----RPRELPLTMDYEN 60
           ME+E +DD+ FA+++++++LLI D+DE   ++ + + +   L     +    P  M  E 
Sbjct: 3   MELELDDDVFFADISKQLNLLITDEDEQNPISLSSSVSFQGLFRGNYQTSATPYMMYNEQ 62

Query: 61  ---GFVRESKGTGVFIPTRLPP-------PKRKQKNATVGYRIKSEN----------KRL 106
                +RESKGTGVFIP    P       P +K++   +G  I  +             L
Sbjct: 63  INYNVIRESKGTGVFIPRSSQPRRKHNHHPHQKKQGRFIGSFIPKQQFPHHGHDNNLTTL 122

[Close]

BLAST of MELO3C021409 vs. NCBI nr
Match: gi|659117368|ref|XP_008458565.1| (PREDICTED: uncharacterized protein LOC103497931 [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 3.0e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MEVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRES 60
           MEVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRES
Sbjct: 1   MEVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRES 60

Query: 61  KGTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK 110
           KGTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK
Sbjct: 61  KGTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK 109

[Close]

BLAST of MELO3C021409 vs. NCBI nr
Match: gi|449463088|ref|XP_004149266.1| (PREDICTED: uncharacterized protein LOC101220151 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 3.3e-47
Identity = 97/109 (88.99%), Postives = 99/109 (90.83%), Query Frame = 1


Query: 1   MEVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRES 60
           MEVE+DDLLFAELTRRISLLIMDDDELPI +TNFTRTVHQLRPRELPL MDYENGFVRES
Sbjct: 3   MEVESDDLLFAELTRRISLLIMDDDELPIAHTNFTRTVHQLRPRELPLMMDYENGFVRES 62

Query: 61  KGTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPMYYCKPK 110
           KGTGVFIP RLPP KRKQKN T GYRIKSENKRLN   QPSP YYCKPK
Sbjct: 63  KGTGVFIPARLPPRKRKQKNVTAGYRIKSENKRLNG--QPSPTYYCKPK 109

[Close]

BLAST of MELO3C021409 vs. NCBI nr
Match: gi|1009141133|ref|XP_015888028.1| (PREDICTED: uncharacterized protein LOC107423031 [Ziziphus jujuba])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 48/118 (40.68%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 1   MEVENDDLLFAELTRRISLLIMDDDELPIVNTN------FTRTVHQLRPRELPLTMDYEN 60
           MEVE DD  FA+L+++ISLLIMDD+E P+ N        F+   H   P + P    YE 
Sbjct: 5   MEVE-DDSFFADLSKQISLLIMDDEEDPLANCPSVSLQAFSHATHP--PVQSPFL--YEQ 64

Query: 61  GFVRESKGTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNN---NRQPSPMYYCKPK 110
              RESKGTGVFIP    P ++ ++     Y  KS+ +  NN   ++ PS   + KPK
Sbjct: 65  VCRRESKGTGVFIPQSSQPRRKNRQGRFTSYNTKSQRQPENNKIASQLPSSASF-KPK 116

[Close]

BLAST of MELO3C021409 vs. NCBI nr
Match: gi|596287933|ref|XP_007225855.1| (hypothetical protein PRUPE_ppa013511mg [Prunus persica])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 41/95 (43.16%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1  MEVENDDLLFAELTRRISLLIMDDDELPIVN------TNFTRTVHQLRPRELPLTMDYEN 60
          ME   DDL FA+LTR+ISLLIMDDDE P+          F+  +H   P   P ++ YE 
Sbjct: 1  MEKLEDDLFFADLTRQISLLIMDDDEDPVATCPSVSLQAFSCAIH--HPPAQPTSL-YEQ 60

Query: 61 GFVRESKGTGVFIPTRLPPPKRKQKNATVGYRIKS 90
             RE+KGTGVFIP    P ++ ++     Y  KS
Sbjct: 61 SRRRETKGTGVFIPQSSQPRRKHRQGRFASYNTKS 92

[Close]

BLAST of MELO3C021409 vs. NCBI nr
Match: gi|1000970935|ref|XP_002517185.2| (PREDICTED: uncharacterized protein LOC8271592 [Ricinus communis])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 47/109 (43.12%), Postives = 59/109 (54.13%), Query Frame = 1


Query: 1   MEVENDDLLFAELTRRISLLIMDDDELPIVN------TNFTRTVHQLRPRELPLTMDYEN 60
           ME+E DDL FA+L ++ISLLIMDDDE P+ +       NF+R  H   P     +  YE 
Sbjct: 1   MELE-DDLFFADLNKQISLLIMDDDEDPVASYPSVAFQNFSRGNHPTAPS----SYTYEQ 60

Query: 61  GFVRESKGTGVFIPTRLPPPKRKQKNATVGYRIKSENKRLNNNRQPSPM 104
              RESKGTGVFIP R   P+RK +      R  S N + N     + M
Sbjct: 61  TCRRESKGTGVFIP-RSSQPRRKHRQG----RHSSFNSKTNRQHDSTRM 99

The following BLAST results are available for this feature:

BLAST of MELO3C021409 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGT1_CUCSA	2.3e-47	88.99	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G153490 PE=4 SV=1	[more]
M5XMB2_PRUPE	2.8e-08	43.16	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013511mg PE=4 SV=1	[more]
A0A103XMP0_CYNCS	4.0e-07	43.27	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_004374 PE=4 ...	[more]
W9R5M3_9ROSA	5.2e-07	40.78	Uncharacterized protein OS=Morus notabilis GN=L484_007345 PE=4 SV=1	[more]
D7T6S8_VITVI	6.8e-07	37.84	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02830 PE=4 SV=...	[more]

BLAST of MELO3C021409 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06070.1	5.2e-06	29.77	unknown protein	[more]

BLAST of MELO3C021409 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117368\|ref\|XP_008458565.1\|	3.0e-56	100.00	PREDICTED: uncharacterized protein LOC103497931 [Cucumis melo]	[more]
gi\|449463088\|ref\|XP_004149266.1\|	3.3e-47	88.99	PREDICTED: uncharacterized protein LOC101220151 [Cucumis sativus]	[more]
gi\|1009141133\|ref\|XP_015888028.1\|	4.0e-08	40.68	PREDICTED: uncharacterized protein LOC107423031 [Ziziphus jujuba]	[more]
gi\|596287933\|ref\|XP_007225855.1\|	4.0e-08	43.16	hypothetical protein PRUPE_ppa013511mg [Prunus persica]	[more]
gi\|1000970935\|ref\|XP_002517185.2\|	4.0e-08	43.12	PREDICTED: uncharacterized protein LOC8271592 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU61579	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021409T1	MELO3C021409T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU61579	MU61579	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34956	FAMILY NOT NAMED	coord: 1..80 score: 1.6
None	No IPR available	PANTHER	PTHR34956:SF2	SUBFAMILY NOT NAMED	coord: 1..80 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C021409	Csa6G153490	Cucumber (Chinese Long) v2	cumeB424
MELO3C021409	ClCG06G005870	Watermelon (Charleston Gray)	mewcgB124
MELO3C021409	Cla97C06G115380	Watermelon (97103) v2	mewmbB128
MELO3C021409	Bhi12G001608	Wax gourd	mewgoB100
MELO3C021409	CSPI06G12650	Wild cucumber (PI 183967)	cpimeB417
MELO3C021409	Cucsa.385000	Cucumber (Gy14) v1	cgymeB631
MELO3C021409	CmaCh08G011640	Cucurbita maxima (Rimu)	cmameB816
MELO3C021409	CmaCh17G002650	Cucurbita maxima (Rimu)	cmameB313
MELO3C021409	CmoCh08G011360	Cucurbita moschata (Rifu)	cmomeB800
MELO3C021409	Lsi09G013490	Bottle gourd (USVL1VR-Ls)	lsimeB017
MELO3C021409	Cp4.1LG17g01300	Cucurbita pepo (Zucchini)	cpemeB289
MELO3C021409	CsGy6G012760	Cucumber (Gy14) v2	cgybmeB365
MELO3C021409	Carg05445	Silver-seed gourd	carmeB0067
MELO3C021409	CsaV3_6G015120	Cucumber (Chinese Long) v3	cucmeB429

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021409	Cucumber (Gy14) v1	cgymeB090
MELO3C021409	Cucumber (Gy14) v1	cgymeB430
MELO3C021409	Cucurbita maxima (Rimu)	cmameB215
MELO3C021409	Cucurbita maxima (Rimu)	cmameB781
MELO3C021409	Cucurbita moschata (Rifu)	cmomeB200
MELO3C021409	Cucurbita moschata (Rifu)	cmomeB306
MELO3C021409	Cucurbita moschata (Rifu)	cmomeB769
MELO3C021409	Wild cucumber (PI 183967)	cpimeB174
MELO3C021409	Wild cucumber (PI 183967)	cpimeB426
MELO3C021409	Cucumber (Chinese Long) v2	cumeB180
MELO3C021409	Watermelon (Charleston Gray)	mewcgB119
MELO3C021409	Watermelon (Charleston Gray)	mewcgB121
MELO3C021409	Watermelon (97103) v1	mewmB096
MELO3C021409	Watermelon (97103) v1	mewmB141
MELO3C021409	Cucurbita pepo (Zucchini)	cpemeB112
MELO3C021409	Cucurbita pepo (Zucchini)	cpemeB555
MELO3C021409	Bottle gourd (USVL1VR-Ls)	lsimeB342
MELO3C021409	Cucumber (Gy14) v2	cgybmeB149
MELO3C021409	Silver-seed gourd	carmeB0227
MELO3C021409	Silver-seed gourd	carmeB0327
MELO3C021409	Cucumber (Chinese Long) v3	cucmeB176
MELO3C021409	Cucumber (Chinese Long) v3	cucmeB437
MELO3C021409	Watermelon (97103) v2	mewmbB123
MELO3C021409	Wax gourd	mewgoB105
MELO3C021409	Melon (DHL92) v3.5.1	memeB051
MELO3C021409	Melon (DHL92) v3.5.1	memeB062