Carg17404 (gene) Silver-seed gourd

Overview
NameCarg17404
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA polymerase epsilon subunit B like
LocationCucurbita_argyrosperma_scaffold_092 : 447880 .. 449789 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCTGTGTTAAGCTTCTTATGGATTTCCTGAACAGTCTGTCTACGAATTGAGATGTTTGGGTTATAGATAAGGTTTGGATATTTCGACCATAAAAAGATTAATCAGAATCGTTGGCTTATTAAAACTATGAGCCAAACGTTTCTTCGACGTTGTTTATGTTCCTGTAATGCAGCTGGCCCCGCGAAAGAGATGCCCGACGACTGCTGAACTGATGGTCTTAAACAACACACAGATGCACGGATGAGTACCAATGACTTAGCTTAGCTAGTTGAGAGCCTGATAGATCCTCTCCCATGTACGACAATACAGGTAATTTATTGCCTTTTAGAATACATATCATAGATACATGAGATTATGTTCACGTACTAATCAGATTTACTTTGATGACCTAAGTCCACCTCTAATAGATATTGTACTCTTTAAGTTTTTCCTTTCGAGCTACCGTTATTAGGGAGAGGTTTCCACATACGGGTCTCACAAAAATTAGCACAAACCCAAGTGGGCTGAAGATTTAAACCAAATTTAGATGGTGGTTTGTTTTTAAGTGGGCTGAAGATTTAAACCAAATTTAGATGGTGGTTTGTTTTTGAAGAAGATTTTTGCCGGCAAACGATCCTCATCTTTTCCCCAACTGGATAACACAATGCAATGATTCTTGTGGGGTCTCTTAAAGTTTTAGACAGATTGGCCAGCTGTGGCTAATGACCCACCATCTCACATGCTCAGCCAATGTGGTTTTGACTCACCCATCACTCCCTTTTTCCTCCCCCCCCCCCCCTCTCTAAACTCTATATATCTTCTCTCTCTCGCTTGCTCAGCCAAGTGTGTGCGTGTATAACACTATAAGTTCTGTATTTAGTTCTTTTGTAGCTCTGAGTATAGACAACATGGAAGTAGCTTTGGAACTTGAAGATGATTTGTTCTTCGCTGATTTAAGCAGACAGCTCTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCATCATCCCCATGTTTCTCTTCAGGTACTTCCTTTGTCCAAATTTCATTCATTTGGGTATGCTTTTTTAGTCTCTCTGTTTGTGGCTGTGAATTCAAACAAGCTCGATCAATCTGCAGGCTCTCGCTCATGGAGGCCACCAGCCTGCACGGCCACTGGCGGTGCATGACCAAGCTGCCGCTGCTATTGTCGCTGCCTACAGTGGCGTAAGCAAAGGCACCGGCGTGTTCATCCCTCGGTCTTTGCAGTCTGCAAGAAAACAGAGGCGTGGAAGATACAATAACATAAAGGCAAACCGACAGTTTCCAATCGCTATTGATGTGAATTCACAAGTATCCAACAACAATTCGTTGCGTCCCAAAAAGGGTTAAGGATTCGAGGAATTTGAGGAAAAGGGTATCAGAATTTAGATTAAAAAAATAATTCTTTCACCAAGTATTTAAGTACGGTGATGCCTGTACATGGAAGAAGCTATAGTATTAGCTCTATTAATTACTGGGTTTTCATTGGTTTATGTGTTCCATTGGAAGGTTAATTAATTAACCTAAGGTTTGTGAACCTCCCTCCTTGTGTTCTTCTTCACGAGAGAAAGAGTTCGTTTGTTAGGATCGTCAATCCAAACATAACTCAAAGGTACTAAATACTCGAATCTCGACTGCAAAAGCTGAGATGAGTCTGAATTTGTGTTGTAATATGCTCTTAACTGGCAGCCATGCAGTGGCACATGAGCCGTCATGTTTGGATAGCTGGATCTCTGTTGCAAAGAAAGCTAAAGTTCTCTAAAAACATATTCACAGTGAGACAGAGGAGAGAGAAGGATTCCTACGCTTTCGATCTCGATAATTACCTATATATTTTAACTAGTTGAATCAAGTTATAATTAAATTATGTAACCCATTTCGTTACTGATTAAATTATATGA

mRNA sequence

TTTTCTGTGTTAAGCTTCTTATGGATTTCCTGAACAGTCTGTCTACGAATTGAGATGTTTGGGTTATAGATAAGGTTTGGATATTTCGACCATAAAAAGATTAATCAGAATCGTTGGCTTATTAAAACTATGAGCCAAACGTTTCTTCGACGTTGTTTATGTTCCTGTAATGCAGCTGGCCCCGCGAAAGAGATGCCCGACGACTGCTGAACTGATGGTCTTAAACAACACACAGATGCACGGATGAGTACCAATGACTTAGCTTAGCTAGTTGAGAGCCTGATAGATCCTCTCCCATGTACGACAATACAGTTCTTTTGTAGCTCTGAGTATAGACAACATGGAAGTAGCTTTGGAACTTGAAGATGATTTGTTCTTCGCTGATTTAAGCAGACAGCTCTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCATCATCCCCATGTTTCTCTTCAGGCTCTCGCTCATGGAGGCCACCAGCCTGCACGGCCACTGGCGGTGCATGACCAAGCTGCCGCTGCTATTGTCGCTGCCTACAGTGGCGTAAGCAAAGGCACCGGCGTGTTCATCCCTCGGTCTTTGCAGTCTGCAAGAAAACAGAGGCGTGGAAGATACAATAACATAAAGGCAAACCGACAGTTTCCAATCGCTATTGATGTGAATTCACAAGTATCCAACAACAATTCGTTGCGTCCCAAAAAGGGTTAAGGATTCGAGGAATTTGAGGAAAAGGGTATCAGAATTTAGATTAAAAAAATAATTCTTTCACCAAGTATTTAAGTACGGTGATGCCTGTACATGGAAGAAGCTATAGTATTAGCTCTATTAATTACTGGGTTTTCATTGGTTTATGTGTTCCATTGGAAGGTTAATTAATTAACCTAAGGTTTGTGAACCTCCCTCCTTGTGTTCTTCTTCACGAGAGAAAGAGTTCGTTTGTTAGGATCGTCAATCCAAACATAACTCAAAGGTACTAAATACTCGAATCTCGACTGCAAAAGCTGAGATGAGTCTGAATTTGTGTTGTAATATGCTCTTAACTGGCAGCCATGCAGTGGCACATGAGCCGTCATGTTTGGATAGCTGGATCTCTGTTGCAAAGAAAGCTAAAGTTCTCTAAAAACATATTCACAGTGAGACAGAGGAGAGAGAAGGATTCCTACGCTTTCGATCTCGATAATTACCTATATATTTTAACTAGTTGAATCAAGTTATAATTAAATTATGTAACCCATTTCGTTACTGATTAAATTATATGA

Coding sequence (CDS)

ATGGAAGTAGCTTTGGAACTTGAAGATGATTTGTTCTTCGCTGATTTAAGCAGACAGCTCTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCATCATCCCCATGTTTCTCTTCAGGCTCTCGCTCATGGAGGCCACCAGCCTGCACGGCCACTGGCGGTGCATGACCAAGCTGCCGCTGCTATTGTCGCTGCCTACAGTGGCGTAAGCAAAGGCACCGGCGTGTTCATCCCTCGGTCTTTGCAGTCTGCAAGAAAACAGAGGCGTGGAAGATACAATAACATAAAGGCAAACCGACAGTTTCCAATCGCTATTGATGTGAATTCACAAGTATCCAACAACAATTCGTTGCGTCCCAAAAAGGGTTAA

Protein sequence

MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQAAAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLRPKKG
Homology
[Close]
BLAST of Carg17404 vs. NCBI nr
Match: XP_022933798.1 (uncharacterized protein LOC111441102 [Cucurbita moschata] >XP_022933806.1 uncharacterized protein LOC111441102 [Cucurbita moschata])

HSP 1 Score: 237.7 bits (605), Expect = 2.2e-59
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 61  AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLR 120
           AAAIV AYSGVSKGTGVFIPRSLQ ARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLR
Sbjct: 61  AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLR 120

Query: 121 PKKG 125
           PKKG
Sbjct: 121 PKKG 124

[Close]
BLAST of Carg17404 vs. NCBI nr
Match: XP_022973676.1 (uncharacterized protein LOC111472261 [Cucurbita maxima])

HSP 1 Score: 237.3 bits (604), Expect = 2.9e-59
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 61  AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLR 120
           AAAIVAAYSGVSKGTGVFIPRSLQ ARKQRRGRYNNIKANRQFPI +DVNSQVSNNNSLR
Sbjct: 61  AAAIVAAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPITVDVNSQVSNNNSLR 120

Query: 121 PKKG 125
           PKKG
Sbjct: 121 PKKG 124

[Close]
BLAST of Carg17404 vs. NCBI nr
Match: XP_023539236.1 (uncharacterized protein LOC111799938 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 2.9e-59
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 61  AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLR 120
           AAAIVAAYSGVSKGTGVFIPRSLQ ARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSL 
Sbjct: 61  AAAIVAAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLH 120

Query: 121 PKKG 125
           PKKG
Sbjct: 121 PKKG 124

[Close]
BLAST of Carg17404 vs. NCBI nr
Match: XP_008438708.1 (PREDICTED: uncharacterized protein LOC103483733 [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 1.6e-46
Identity = 105/125 (84.00%), Postives = 112/125 (89.60%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP  PHVSLQAL+HG H P RPLA H+ A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-RPHVSLQALSHGVHYPTRPLATHEHA 60

Query: 61  AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSL- 120
           AAA+ AAY+GVSKGTGVFIPRSLQ ARKQRRGR+NNIK NRQF I+IDVNSQVS+NN L 
Sbjct: 61  AAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVSSNNHLM 120

Query: 121 RPKKG 125
           RPKKG
Sbjct: 121 RPKKG 124

[Close]
BLAST of Carg17404 vs. NCBI nr
Match: XP_004134148.1 (PREDICTED: uncharacterized protein LOC101209089 [Cucumis sativus] >KGN57011.1 hypothetical protein Csa_3G149910 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 106/126 (84.13%), Postives = 114/126 (90.48%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQ- 60
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP HPHVSLQAL+HG H P RPLA H+  
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-HPHVSLQALSHGVHYPTRPLATHEHA 60

Query: 61  AAAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYNNIKANRQFPIAIDVNSQV-SNNNS 120
           AAAA+ AAY+GVSKGTGVFIPRSLQ ARKQRRGR+NNIK NRQF I+IDVNSQV SNN+S
Sbjct: 61  AAAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVPSNNHS 120

Query: 121 LRPKKG 125
           +RPKKG
Sbjct: 121 MRPKKG 125

[Close]
BLAST of Carg17404 vs. TAIR10
Match: AT5G19190.1 (unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-----HHPHVSLQALAHGGHQPARPLA 60
           M + LEL+DD+FFAD+S+Q+SLL+MD++E   P         +S Q L  GG+Q A  + 
Sbjct: 1   MAMELELDDDVFFADISKQISLLIMDEDEHLNPVSLSSSSSSLSFQGLFRGGYQTAPYMY 60

Query: 61  VHDQAAAAIVAAYSGVSKGTGVFIPRSLQSARK----QRRGRYNNIKANR 102
             +Q            SKGTGVFIP+S Q  R+    Q++GRY++  A +
Sbjct: 61  QQEQ------------SKGTGVFIPKSSQPRRRPHHHQKQGRYSSFNAKQ 98

[Close]
BLAST of Carg17404 vs. TAIR10
Match: AT3G06070.1 (unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 8.7e-10
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMD-DNEDPLPHHPHVSLQALAHGGHQ-PARPLAVHD 60
           M + LEL+DD+FFAD+S+QL+LL+ D D ++P+     VS Q L  G +Q  A P  +++
Sbjct: 1   MAMELELDDDVFFADISKQLNLLITDEDEQNPISLSSSVSFQGLFRGNYQTSATPYMMYN 60

Query: 61  QAAAAIVAAYSGVSKGTGVFIPRSLQSARK-------QRRGRY-NNIKANRQFP 105
           +     V      SKGTGVFIPRS Q  RK       +++GR+  +    +QFP
Sbjct: 61  EQINYNVIR---ESKGTGVFIPRSSQPRRKHNHHPHQKKQGRFIGSFIPKQQFP 111

[Close]
BLAST of Carg17404 vs. TrEMBL
Match: tr|A0A1S3AX25|A0A1S3AX25_CUCME (uncharacterized protein LOC103483733 OS=Cucumis melo OX=3656 GN=LOC103483733 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46
Identity = 105/125 (84.00%), Postives = 112/125 (89.60%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP  PHVSLQAL+HG H P RPLA H+ A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-RPHVSLQALSHGVHYPTRPLATHEHA 60

Query: 61  AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSL- 120
           AAA+ AAY+GVSKGTGVFIPRSLQ ARKQRRGR+NNIK NRQF I+IDVNSQVS+NN L 
Sbjct: 61  AAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVSSNNHLM 120

Query: 121 RPKKG 125
           RPKKG
Sbjct: 121 RPKKG 124

[Close]
BLAST of Carg17404 vs. TrEMBL
Match: tr|A0A0A0LAE7|A0A0A0LAE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.4e-46
Identity = 106/126 (84.13%), Postives = 114/126 (90.48%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQ- 60
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP HPHVSLQAL+HG H P RPLA H+  
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-HPHVSLQALSHGVHYPTRPLATHEHA 60

Query: 61  AAAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYNNIKANRQFPIAIDVNSQV-SNNNS 120
           AAAA+ AAY+GVSKGTGVFIPRSLQ ARKQRRGR+NNIK NRQF I+IDVNSQV SNN+S
Sbjct: 61  AAAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVPSNNHS 120

Query: 121 LRPKKG 125
           +RPKKG
Sbjct: 121 MRPKKG 125

[Close]
BLAST of Carg17404 vs. TrEMBL
Match: tr|A0A067KYS4|A0A067KYS4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02121 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60
           MEVA+E EDDL FADLS+Q+SLL+MDD+EDP+ ++P VS Q  +  G+ PA        A
Sbjct: 1   MEVAMEFEDDLLFADLSKQISLLIMDDDEDPVANYPSVSFQDFSR-GNCPA--------A 60

Query: 61  AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGR---YNNIKANRQFPIAIDVNSQVSNNN 120
           A++ V      SKGTGVFIPRS Q  RK R+GR   +N+ K+NR       + SQVS +N
Sbjct: 61  ASSFVCEQRRESKGTGVFIPRSSQPRRKDRQGRHSSFNSSKSNRLHQDNTRMVSQVSYSN 118

Query: 121 SLRPKKG 125
           SL PKKG
Sbjct: 121 SLYPKKG 118

[Close]
BLAST of Carg17404 vs. TrEMBL
Match: tr|D7T6S8|D7T6S8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g02830 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60
           MEVA+E+EDDLFF DLS+Q+SLL+MDD+EDP+   P VSLQA +   H   +   +HDQ 
Sbjct: 1   MEVAMEIEDDLFFQDLSKQISLLIMDDDEDPVARCPSVSLQAFSRVIHPSTQYPILHDQN 60

Query: 61  AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYN--NIKANRQFPIAIDVNSQVSNNNS 120
                      SKGTGVFIPRS Q  RK R+GR+N  N K+ RQ P      S +S  NS
Sbjct: 61  CRR-------ESKGTGVFIPRSSQPRRKNRQGRFNSSNTKSQRQ-PDNTRGVSHLSYKNS 117

Query: 121 LRPKK 124
             PKK
Sbjct: 121 FNPKK 117

[Close]
BLAST of Carg17404 vs. TrEMBL
Match: tr|A0A2C9W8U2|A0A2C9W8U2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G182700 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 0 

Query: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60
           MEVA+ELEDDLFFAD+S+Q+SLL+M+D+EDP+ ++P VS Q  +   +  A    +++Q 
Sbjct: 1   MEVAIELEDDLFFADISKQISLLVMEDDEDPVANYPSVSFQDFSRANYPTASSACMYEQR 60

Query: 61  AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYN--NIKANRQFPIAIDVNSQVSNNNS 120
                      SKGTGVFIPRS Q  RK R+GR++  N K+++Q   A  V S VS NNS
Sbjct: 61  RE---------SKGTGVFIPRSSQPRRKHRQGRHSSFNSKSHKQQDNARMV-SHVSYNNS 115

Query: 121 LRPKK 124
           L P+K
Sbjct: 121 LYPRK 115

The following BLAST results are available for this feature:
BLAST of Carg17404 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933798.12.2e-5998.39uncharacterized protein LOC111441102 [Cucurbita moschata] >XP_022933806.1 unchar... [more]
XP_022973676.12.9e-5997.58uncharacterized protein LOC111472261 [Cucurbita maxima][more]
XP_023539236.12.9e-5998.39uncharacterized protein LOC111799938 [Cucurbita pepo subsp. pepo][more]
XP_008438708.11.6e-4684.00PREDICTED: uncharacterized protein LOC103483733 [Cucumis melo][more]
XP_004134148.12.1e-4684.13PREDICTED: uncharacterized protein LOC101209089 [Cucumis sativus] >KGN57011.1 hy... [more]
BLAST of Carg17404 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19190.12.7e-1140.00unknown protein[more]
AT3G06070.18.7e-1040.35unknown protein[more]
BLAST of Carg17404 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg17404 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AX25|A0A1S3AX25_CUCME1.1e-4684.00uncharacterized protein LOC103483733 OS=Cucumis melo OX=3656 GN=LOC103483733 PE=... [more]
tr|A0A0A0LAE7|A0A0A0LAE7_CUCSA1.4e-4684.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1[more]
tr|A0A067KYS4|A0A067KYS4_JATCU7.3e-1951.97Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02121 PE=4 SV=1[more]
tr|D7T6S8|D7T6S8_VITVI1.4e-1751.20Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g02830 PE=4 SV=... [more]
tr|A0A2C9W8U2|A0A2C9W8U2_MANES1.8e-1748.80Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G182700 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17404-RACarg17404-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34956:SF2SUBFAMILY NOT NAMEDcoord: 1..123
NoneNo IPR availablePANTHERPTHR34956FAMILY NOT NAMEDcoord: 1..123

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17404Cla021653Watermelon (97103) v1carwmB0603
Carg17404Csa3G149910Cucumber (Chinese Long) v2carcuB0633
Carg17404MELO3C006554Melon (DHL92) v3.5.1carmeB0610
Carg17404ClCG06G005870Watermelon (Charleston Gray)carwcgB0589
Carg17404ClCG05G005340Watermelon (Charleston Gray)carwcgB0588
Carg17404CSPI03G13390Wild cucumber (PI 183967)carcpiB0639
Carg17404Cucsa.254090Cucumber (Gy14) v1carcgyB0681
Carg17404CmaCh08G011640Cucurbita maxima (Rimu)carcmaB0850
Carg17404CmaCh06G014280Cucurbita maxima (Rimu)carcmaB0849
Carg17404CmaCh14G016850Cucurbita maxima (Rimu)carcmaB0847
Carg17404CmoCh08G011360Cucurbita moschata (Rifu)carcmoB0826
Carg17404CmoCh06G014310Cucurbita moschata (Rifu)carcmoB0825
Carg17404CmoCh14G017290Cucurbita moschata (Rifu)carcmoB0823
Carg17404Lsi05G014460Bottle gourd (USVL1VR-Ls)carlsiB552
Carg17404Lsi09G013490Bottle gourd (USVL1VR-Ls)carlsiB550
Carg17404Cp4.1LG03g10940Cucurbita pepo (Zucchini)carcpeB0860
Carg17404Cp4.1LG17g01300Cucurbita pepo (Zucchini)carcpeB0858
Carg17404Cp4.1LG08g04300Cucurbita pepo (Zucchini)carcpeB0861
Carg17404CsGy3G013510Cucumber (Gy14) v2carcgybB0605
Carg17404CsaV3_3G013590Cucumber (Chinese Long) v3carcucB0640
Carg17404Cla97C05G086650Watermelon (97103) v2carwmbB0631
Carg17404Bhi01G000620Wax gourdcarwgoB0722
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg17404Carg23814Silver-seed gourdcarcarB258
The following block(s) are covering this gene:
GeneOrganismBlock
Carg17404Silver-seed gourdcarcarB083
Carg17404Silver-seed gourdcarcarB347
Carg17404Cucurbita maxima (Rimu)carcmaB0848
Carg17404Cucurbita moschata (Rifu)carcmoB0824
Carg17404Cucurbita pepo (Zucchini)carcpeB0857
Carg17404Melon (DHL92) v3.6.1carmedB0616
Carg17404Watermelon (97103) v1carwmB0604
Carg17404Watermelon (97103) v2carwmbB0632
Carg17404Wax gourdcarwgoB0719