Carg23521 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23521
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	preprotein translocase subunit SECE1
Location	Cucurbita_argyrosperma_scaffold_278 : 155342 .. 155881 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTTCCGATCTCCCTGCGATTTCCGACGGTACCTTCCACTTTAACTAACAGAGCGGCCTCCTTGCTTGTATCACTACGGCGGAGCTCCGCGTATCATTCTCATCCTCACTTACATCGCACGATCAGACTCCCGGGGATTAGGTCTAGAAGGAATAGCATGTTCTCCGCTGTCAATGCCGTGCAGGAAAGCCAAGAGAATACAGAATCTGATGGGGTGGAGGTTCAAGCTGGGCCGCCGAGGGAGGAATCGAAAACGGCTGATCAACCGGCAGAATCTGGCGAGAATTTGGGCGCCGAAATTCAGGAGGCTTTGAAGCAGCGGAAGGTGGAGAAAGAGGGGGACCTGATTGGGGGAGTGGCGGAGGAGATTCAGAAGATTGAGTGGCCGGCGTTTCGAAAGGTTTTGGGCACGACGGGGGTGGTGATCGGCGTTATTGCTGGTTCTAGTGTCGTTTTGCTCACTGTGAATGCCTTACTGGCGGAGCTGTCCGATCGAGTTTTCGCCGGAAAAGGAGTTCAGGATTTCTTTAGCTGA

mRNA sequence

ATGGCCGTTCCGATCTCCCTGCGATTTCCGACGGTACCTTCCACTTTAACTAACAGAGCGGCCTCCTTGCTTGTATCACTACGGCGGAGCTCCGCGTATCATTCTCATCCTCACTTACATCGCACGATCAGACTCCCGGGGATTAGGTCTAGAAGGAATAGCATGTTCTCCGCTGTCAATGCCGTGCAGGAAAGCCAAGAGAATACAGAATCTGATGGGGTGGAGGTTCAAGCTGGGCCGCCGAGGGAGGAATCGAAAACGGCTGATCAACCGGCAGAATCTGGCGAGAATTTGGGCGCCGAAATTCAGGAGGCTTTGAAGCAGCGGAAGGTGGAGAAAGAGGGGGACCTGATTGGGGGAGTGGCGGAGGAGATTCAGAAGATTGAGTGGCCGGCGTTTCGAAAGGTTTTGGGCACGACGGGGGTGGTGATCGGCGTTATTGCTGGTTCTAGTGTCGTTTTGCTCACTGTGAATGCCTTACTGGCGGAGCTGTCCGATCGAGTTTTCGCCGGAAAAGGAGTTCAGGATTTCTTTAGCTGA

Coding sequence (CDS)

ATGGCCGTTCCGATCTCCCTGCGATTTCCGACGGTACCTTCCACTTTAACTAACAGAGCGGCCTCCTTGCTTGTATCACTACGGCGGAGCTCCGCGTATCATTCTCATCCTCACTTACATCGCACGATCAGACTCCCGGGGATTAGGTCTAGAAGGAATAGCATGTTCTCCGCTGTCAATGCCGTGCAGGAAAGCCAAGAGAATACAGAATCTGATGGGGTGGAGGTTCAAGCTGGGCCGCCGAGGGAGGAATCGAAAACGGCTGATCAACCGGCAGAATCTGGCGAGAATTTGGGCGCCGAAATTCAGGAGGCTTTGAAGCAGCGGAAGGTGGAGAAAGAGGGGGACCTGATTGGGGGAGTGGCGGAGGAGATTCAGAAGATTGAGTGGCCGGCGTTTCGAAAGGTTTTGGGCACGACGGGGGTGGTGATCGGCGTTATTGCTGGTTCTAGTGTCGTTTTGCTCACTGTGAATGCCTTACTGGCGGAGCTGTCCGATCGAGTTTTCGCCGGAAAAGGAGTTCAGGATTTCTTTAGCTGA

Protein sequence

MAVPISLRFPTVPSTLTNRAASLLVSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAVNAVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGGVAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS

Homology

[Close]

BLAST of Carg23521 vs. NCBI nr
Match: XP_023528201.1 (preprotein translocase subunit SECE1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.5 bits (846), Expect = 3.6e-87
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MAVPISLRFPTVPSTLTNRAASLLVSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAVN 60
           MAVPISLRFPTVPSTLTNRAASL VSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAVN
Sbjct: 1   MAVPISLRFPTVPSTLTNRAASLFVSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAVN 60

Query: 61  AVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG 120
           AVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG
Sbjct: 61  AVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG 120

Query: 121 VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 180
           VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS
Sbjct: 121 VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 179

[Close]

BLAST of Carg23521 vs. NCBI nr
Match: XP_022956080.1 (preprotein translocase subunit SECE1 [Cucurbita moschata])

HSP 1 Score: 328.9 bits (842), Expect = 1.0e-86
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MAVPISLRFPTVPSTLTNRAASLLVSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAVN 60
           MAVPISLRFPTVPST TNRAASL VSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAVN
Sbjct: 1   MAVPISLRFPTVPSTFTNRAASLFVSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAVN 60

Query: 61  AVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG 120
           AVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG
Sbjct: 61  AVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG 120

Query: 121 VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 180
           VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS
Sbjct: 121 VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 179

[Close]

BLAST of Carg23521 vs. NCBI nr
Match: XP_022979428.1 (preprotein translocase subunit SECE1 [Cucurbita maxima])

HSP 1 Score: 313.2 bits (801), Expect = 5.9e-82
Identity = 169/179 (94.41%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MAVPISLRFPTVPSTLTNRAASLLVSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAVN 60
           MAVPISLRFP VPSTLT+RAASL VSLRRSS++ SHPH HRTIRLPG+RSRRNS FSAVN
Sbjct: 1   MAVPISLRFPAVPSTLTDRAASLFVSLRRSSSHRSHPHSHRTIRLPGVRSRRNSKFSAVN 60

Query: 61  AVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG 120
           AVQESQENTESDGVEVQAGPP EESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG
Sbjct: 61  AVQESQENTESDGVEVQAGPPTEESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG 120

Query: 121 VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 180
           VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS
Sbjct: 121 VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 179

[Close]

BLAST of Carg23521 vs. NCBI nr
Match: XP_004134136.1 (PREDICTED: preprotein translocase subunit SECE1 [Cucumis sativus] >KGN56983.1 hypothetical protein Csa_3G146680 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 9.1e-75
Identity = 158/179 (88.27%), Postives = 163/179 (91.06%), Query Frame = 0


Query: 1   MAVPISLRFPTVPSTLTNRAASLLVSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAVN 60
           MAVPISL+FPTVPSTLTNR ASL V LRRSS +HSHPH   TIR P IRS RN  FSAVN
Sbjct: 1   MAVPISLKFPTVPSTLTNRTASLFVPLRRSSPHHSHPHSQHTIRFPTIRSNRNVKFSAVN 60

Query: 61  AVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG 120
           AVQESQENTESDGVEVQAGPP EE KTADQ AESG NLGAEIQEALKQ+KVEKEGDLIGG
Sbjct: 61  AVQESQENTESDGVEVQAGPPTEEPKTADQSAESGANLGAEIQEALKQQKVEKEGDLIGG 120

Query: 121 VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 180
           VAEEI++IEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS
Sbjct: 121 VAEEIKEIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 179

[Close]

BLAST of Carg23521 vs. NCBI nr
Match: XP_008438678.1 (PREDICTED: preprotein translocase subunit SECE1 [Cucumis melo])

HSP 1 Score: 286.6 bits (732), Expect = 5.9e-74
Identity = 159/180 (88.33%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MAVPISLRFPTVPSTLTNRAASLLVS-LRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAV 60
           MAVPISL+FPTVPSTLTNR ASL V  LR+SS +HSHPH   TIRLP IRS RN  FSAV
Sbjct: 1   MAVPISLKFPTVPSTLTNRTASLFVPLLRQSSTHHSHPHSQHTIRLPTIRSNRNIKFSAV 60

Query: 61  NAVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIG 120
           NAVQESQENTESDGVEVQAGPP EE KTADQ AESG NLGAEIQEALKQRKVEKEGDLIG
Sbjct: 61  NAVQESQENTESDGVEVQAGPPTEEPKTADQSAESGANLGAEIQEALKQRKVEKEGDLIG 120

Query: 121 GVAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 180
           GVAEEI++IEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS
Sbjct: 121 GVAEEIKEIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 180

[Close]

BLAST of Carg23521 vs. TAIR10
Match: AT4G14870.1 (secE/sec61-gamma protein transport protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 98  LGAEIQEALKQRKVEKE----GDLIGGVAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVV 157
           +GAEI+ A++QRK  +E     + + GVAEE+++IEWPAF+KVLGTTGVV+GVIAGSSVV
Sbjct: 92  IGAEIKAAMEQRKTAEEEKGKNEFLSGVAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVV 151

Query: 158 LLTVNALLAELSDRVFAGKGVQDFFS 180
           LLTVN LLAELSDRVF G+GVQDFFS
Sbjct: 152 LLTVNFLLAELSDRVFIGRGVQDFFS 177

[Close]

BLAST of Carg23521 vs. Swiss-Prot
Match: sp|O23342|SECE1_ARATH (Preprotein translocase subunit SECE1 OS=Arabidopsis thaliana OX=3702 GN=SECE1 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-25
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 98  LGAEIQEALKQRKVEKE----GDLIGGVAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVV 157
           +GAEI+ A++QRK  +E     + + GVAEE+++IEWPAF+KVLGTTGVV+GVIAGSSVV
Sbjct: 92  IGAEIKAAMEQRKTAEEEKGKNEFLSGVAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVV 151

Query: 158 LLTVNALLAELSDRVFAGKGVQDFFS 180
           LLTVN LLAELSDRVF G+GVQDFFS
Sbjct: 152 LLTVNFLLAELSDRVFIGRGVQDFFS 177

[Close]

BLAST of Carg23521 vs. TrEMBL
Match: tr|A0A0A0L5J0|A0A0A0L5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146680 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.0e-75
Identity = 158/179 (88.27%), Postives = 163/179 (91.06%), Query Frame = 0


Query: 1   MAVPISLRFPTVPSTLTNRAASLLVSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAVN 60
           MAVPISL+FPTVPSTLTNR ASL V LRRSS +HSHPH   TIR P IRS RN  FSAVN
Sbjct: 1   MAVPISLKFPTVPSTLTNRTASLFVPLRRSSPHHSHPHSQHTIRFPTIRSNRNVKFSAVN 60

Query: 61  AVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIGG 120
           AVQESQENTESDGVEVQAGPP EE KTADQ AESG NLGAEIQEALKQ+KVEKEGDLIGG
Sbjct: 61  AVQESQENTESDGVEVQAGPPTEEPKTADQSAESGANLGAEIQEALKQQKVEKEGDLIGG 120

Query: 121 VAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 180
           VAEEI++IEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS
Sbjct: 121 VAEEIKEIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 179

[Close]

BLAST of Carg23521 vs. TrEMBL
Match: tr|A0A1S3AWM4|A0A1S3AWM4_CUCME (preprotein translocase subunit SECE1 OS=Cucumis melo OX=3656 GN=LOC103483711 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.9e-74
Identity = 159/180 (88.33%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MAVPISLRFPTVPSTLTNRAASLLVS-LRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAV 60
           MAVPISL+FPTVPSTLTNR ASL V  LR+SS +HSHPH   TIRLP IRS RN  FSAV
Sbjct: 1   MAVPISLKFPTVPSTLTNRTASLFVPLLRQSSTHHSHPHSQHTIRLPTIRSNRNIKFSAV 60

Query: 61  NAVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVEKEGDLIG 120
           NAVQESQENTESDGVEVQAGPP EE KTADQ AESG NLGAEIQEALKQRKVEKEGDLIG
Sbjct: 61  NAVQESQENTESDGVEVQAGPPTEEPKTADQSAESGANLGAEIQEALKQRKVEKEGDLIG 120

Query: 121 GVAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 180
           GVAEEI++IEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS
Sbjct: 121 GVAEEIKEIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQDFFS 180

[Close]

BLAST of Carg23521 vs. TrEMBL
Match: tr|A0A2I4GEY0|A0A2I4GEY0_9ROSI (preprotein translocase subunit SECE1 OS=Juglans regia OX=51240 GN=LOC109007286 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.5e-29
Identity = 92/186 (49.46%), Postives = 122/186 (65.59%), Query Frame = 0


Query: 1   MAVPISLRFPTVPSTLTNRAASLLVSLRR------SSAYHSHPHLHRTIRLPGIRSRRNS 60
           MAVP+S++F    + LT R     +S  R           SHP   RT+ +   R++R +
Sbjct: 1   MAVPMSVQFSAASTFLTPRKTGHPLSQVRFKPPPVGRHLLSHPK-QRTLAI--TRTQRRN 60

Query: 61  MFSAVNAVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRKVE-- 120
               +NA  E++E+ E++ V  Q  PP    +   Q  +S   LG++I+EA++QRK E  
Sbjct: 61  RSLTINAADETRESPEAETVSNQDSPP----EPGIQATKSSAELGSQIKEAMRQRKEEEA 120

Query: 121 KEGDLIGGVAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGK 179
           ++G    GVAEEI++IEWPAF KVLGTTGVV+GVIAGSSVVLLTVNA+LAELSDRVFAG+
Sbjct: 121 RDGGFWSGVAEEIREIEWPAFGKVLGTTGVVLGVIAGSSVVLLTVNAVLAELSDRVFAGR 179

[Close]

BLAST of Carg23521 vs. TrEMBL
Match: tr|M5Y5G6|M5Y5G6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G014400 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 93/186 (50.00%), Postives = 120/186 (64.52%), Query Frame = 0


Query: 1   MAVPISLRFPTVPS-TLTNRAASLLVSLRRS---SAYHSHPHLHRTIRLPGIRSRRNSMF 60
           MA+ +S++FP  P+  L  +   +  S+R     +  HS         L   RS++    
Sbjct: 1   MALRMSVQFPITPTFLLPTKGGHVNSSVRLKPPCACNHSVSQFQPRRPLTDPRSKQ---- 60

Query: 61  SAVNAVQESQENTESDGVEV---QAGPPREESKTADQPAESGENLGAEIQEALKQRKVEK 120
           S + AV ESQ N+ES    V   Q     +    A QP E  E LG EI+EA+++RK EK
Sbjct: 61  SLLKAVDESQANSESGPESVSTQQKESAGDGESAASQPVELSE-LGKEIKEAMQKRKEEK 120

Query: 121 EGDLIGGVAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKG 180
           +GD + GVA+E+++IEWPAF KVLGTTGVV+GVIAGSSVVLLTVNA+LAE SD+VFAGKG
Sbjct: 121 DGDFLSGVADEVREIEWPAFAKVLGTTGVVLGVIAGSSVVLLTVNAVLAEFSDQVFAGKG 180

[Close]

BLAST of Carg23521 vs. TrEMBL
Match: tr|A0A2P6P507|A0A2P6P507_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0190521 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.2e-28
Identity = 91/183 (49.73%), Postives = 120/183 (65.57%), Query Frame = 0


Query: 1   MAVPISLRFPTV-PSTLTNRAASLLVSLRRSSAYHSHPHLHRTIRLPGIRSRRNSMFSAV 60
           MA+P   +FP + P   T+++     +L  SS+    P     +       R+  +FS++
Sbjct: 1   MALPFLAQFPVISPFPSTSKSG----NLTSSSSVRLQPPRVSHLTEKSKSKRKPPLFSSI 60

Query: 61  NAVQESQENTESDGVEVQAGPPREESKTADQPAESGENLGAEIQEALKQRK-VEKE---G 120
            AV ESQ ++++        P  E   +A +P E  E LGAEI++A+ +RK  EKE   G
Sbjct: 61  KAVDESQADSDTK-------PKGESKASASEPGELSE-LGAEIKKAMSERKEKEKEGGGG 120

Query: 121 DLIGGVAEEIQKIEWPAFRKVLGTTGVVIGVIAGSSVVLLTVNALLAELSDRVFAGKGVQ 179
           DL+ GVAEEI++IEWP F KVLGTTGVV+GVIAGSSVVLLTVNA+LAELSDRVFAG+GVQ
Sbjct: 121 DLLSGVAEEIREIEWPVFGKVLGTTGVVLGVIAGSSVVLLTVNAVLAELSDRVFAGRGVQ 171

The following BLAST results are available for this feature:

BLAST of Carg23521 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528201.1	3.6e-87	99.44	preprotein translocase subunit SECE1 [Cucurbita pepo subsp. pepo]	[more]
XP_022956080.1	1.0e-86	98.88	preprotein translocase subunit SECE1 [Cucurbita moschata]	[more]
XP_022979428.1	5.9e-82	94.41	preprotein translocase subunit SECE1 [Cucurbita maxima]	[more]
XP_004134136.1	9.1e-75	88.27	PREDICTED: preprotein translocase subunit SECE1 [Cucumis sativus] >KGN56983.1 hy...	[more]
XP_008438678.1	5.9e-74	88.33	PREDICTED: preprotein translocase subunit SECE1 [Cucumis melo]	[more]

BLAST of Carg23521 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14870.1	1.1e-26	70.93	secE/sec61-gamma protein transport protein	[more]

BLAST of Carg23521 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O23342\|SECE1_ARATH	2.0e-25	70.93	Preprotein translocase subunit SECE1 OS=Arabidopsis thaliana OX=3702 GN=SECE1 PE...	[more]

BLAST of Carg23521 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5J0\|A0A0A0L5J0_CUCSA	6.0e-75	88.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146680 PE=4 SV=1	[more]
tr\|A0A1S3AWM4\|A0A1S3AWM4_CUCME	3.9e-74	88.33	preprotein translocase subunit SECE1 OS=Cucumis melo OX=3656 GN=LOC103483711 PE=...	[more]
tr\|A0A2I4GEY0\|A0A2I4GEY0_9ROSI	6.5e-29	49.46	preprotein translocase subunit SECE1 OS=Juglans regia OX=51240 GN=LOC109007286 P...	[more]
tr\|M5Y5G6\|M5Y5G6_PRUPE	1.5e-28	50.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G014400 PE=4 SV=1	[more]
tr\|A0A2P6P507\|A0A2P6P507_ROSCH	4.2e-28	49.73	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0190521 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport
GO:0006605	protein targeting
GO:0009306	protein secretion

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity

Vocabulary: **INTERPRO**
Term	Definition
IPR038379	SecE_sf
IPR001901	Translocase_SecE/Sec61-g
IPR005807	SecE_bac

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009306	protein secretion
biological_process	GO:0006605	protein targeting
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23521-RA	Carg23521-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005807	SecE subunit of protein translocation complex	TIGRFAM	TIGR00964	TIGR00964	coord: 118..164 e-value: 1.1E-7 score: 29.6
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	PFAM	PF00584	SecE	coord: 118..164 e-value: 1.9E-5 score: 24.4
IPR038379	SecE superfamily	GENE3D	G3DSA:1.20.5.1030		coord: 117..167 e-value: 1.5E-5 score: 26.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..97
None	No IPR available	PANTHER	PTHR37240	FAMILY NOT NAMED	coord: 5..179

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23521	Cla021626	Watermelon (97103) v1	carwmB0849
Carg23521	Csa3G146680	Cucumber (Chinese Long) v2	carcuB0865
Carg23521	MELO3C006532	Melon (DHL92) v3.5.1	carmeB0839
Carg23521	CSPI03G13130	Wild cucumber (PI 183967)	carcpiB0884
Carg23521	Cucsa.254300	Cucumber (Gy14) v1	carcgyB0970
Carg23521	CmaCh14G017070	Cucurbita maxima (Rimu)	carcmaB1174
Carg23521	CmoCh14G017500	Cucurbita moschata (Rifu)	carcmoB1142
Carg23521	Lsi05G016040	Bottle gourd (USVL1VR-Ls)	carlsiB772
Carg23521	Cp4.1LG03g10590	Cucurbita pepo (Zucchini)	carcpeB1183
Carg23521	CsGy3G013280	Cucumber (Gy14) v2	carcgybB0838
Carg23521	MELO3C006532.2	Melon (DHL92) v3.6.1	carmedB0850
Carg23521	CsaV3_3G013300	Cucumber (Chinese Long) v3	carcucB0889
Carg23521	Cla97C05G086350	Watermelon (97103) v2	carwmbB0883
Carg23521	Bhi01G000585	Wax gourd	carwgoB0988

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23521	Silver-seed gourd	carcarB545
Carg23521	Cucurbita maxima (Rimu)	carcmaB1177
Carg23521	Cucurbita moschata (Rifu)	carcmoB1145
Carg23521	Cucurbita pepo (Zucchini)	carcpeB1184
Carg23521	Watermelon (Charleston Gray)	carwcgB0820
Carg23521	Watermelon (Charleston Gray)	carwcgB0821
Carg23521	Watermelon (97103) v2	carwmbB0886