Carg22670 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22670
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	prefoldin subunit 1
Location	Cucurbita_argyrosperma_scaffold_148 : 415961 .. 417949 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACGAGGCGAACAGAGCTGTGAGTATTTCTACTCTTCTCATCTTGTTTTTCCACTCGCCACTGCCATTTTCCGATGCATGAACTCTTGATTTTGTTTCTGGAATCAGACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTAATCTCCTTTCATTTTTCACATAAATCTTTTGTAATTACTGTCTAGATTGTTCTTATTCATATTCGTGTTTAATTTCTAAAGTAAACGAATGTTTCCTAGGTTAACTGATGAATCCAATCAATGTTCGTATTTCCAGTTTTGTCATTCTTCGATGTTTCGCTTTATTTGAATGGAGAGTTCTTGATTTATGAGTTCAAGCTGGTGTTCTTTCTCCTTGCTTTGCAGGTGCAAAGCCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACTTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGGTACTCGACAAATCTGTATTTTGTAACTGGAAATTTGTTCATTCTTTGCCTCAATCGTGATTGCTTATCATTGATTTCTTTCCATCATTCTTTGTGGTGCAGGGAGAGCGTGAGTTATGCTACAATTGATCGATCCAGTTGAAGTTAGATTTTCTTTTATCTCATAGTATATATATGAAATTCTCTTACTTTGTGTTGTCTCATCCTGACCAGGTTTGTTTTAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGTTCAAGGATAGTGAAGCTGCAATTGTCTCACTGCAGGTTCATATTAGTATTACTTTCATCTGTAGAGACAAGAGATCTTCCTTTGAGTTCCCAATTTTGTATGCCTATCATTCACGTTGTCTTTTCTTGAAGATTTTGTTAGAGCATTTTTCATTCACTAACTAACATTTTCTTGCCCTTCTATGTTCGATGTGTAACGACCCTAGATTTTTACTAACCTAAAGTCTCTACCGTCATTATACTATACTCTCTTATACTGAAAATAAACCTTGAAAATATTGTCGTAAAACATTGCCATGGACTTGTATGTTTGAAATCATCTTTAAAAGAACCCAAGGAAATACTAAATAAATCAAGTAAAACATTAAAAGTAAAAACACCCTATACTAACCTAAAGTCTAAGAGATGAAATACCACTATCCTATGCACGTGTCATGATCTCTACTTGCAATGTCCTCGTCAACTGCACAGGGGTACTTTGTCTTTACCTGAAATAGAAATAGCACACGGCTTGAGTATTTTAAGAAATACTCCGTAAGTGGGGGTCAGGGAATGCAAACACATACAATTCATGATTAGAGGCCTATCGTTAAAATCATCATAGGGGTCGTTACACTATGTTTTCTTGAAATTTTAATTCTTGCATTAACACAGAATCCGCACACACACAAAAGGGTATTTCTTATGAGGATCTGGGCATATCCAAACACTTCTTTGAACGAATTACGTTCAGTGAAGAGTTCGATGCCATCAATGCTACCTTCTTTCTTGCCAACTAGAACTTAGCTCAAGCATACACACAATATTCTTGGCTTTCAATTTTTTCTTGTCAATTTGAACATAGCTCAATCTGTGAAGGCATATAGATACAATATCCTCGACATCTAATTGAAAGCGAACTTGCTTTTCTGTTTTGGCATCTAATTGAAAGCGAACTAATCACGTTATTTGACTGGTAGAGGTGTCGTTACCAAGAGATTTGGAGAGTAGGCTGAACTTTTGTGATTGACACTATTTGGCAATGTTCTTATTTAATCTTTGATAATTGGCATTTGGGTATTTTTTTTTATTATGAACCCTTCATTGAAGATGGCTTTCTTGCACGTTTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGTCTGTAGCATAA

mRNA sequence

ATGGCGGACGAGGCGAACAGAGCTACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTGCAAAGCCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACTTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGTTCAAGGATAGTGAAGCTGCAATTGTCTCACTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGTCTGTAGCATAA

Coding sequence (CDS)

ATGGCGGACGAGGCGAACAGAGCTACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTGCAAAGCCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACTTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGTTCAAGGATAGTGAAGCTGCAATTGTCTCACTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGTCTGTAGCATAA

Protein sequence

MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIEPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIARQIMSMSVA

Homology

[Close]

BLAST of Carg22670 vs. NCBI nr
Match: XP_022937756.1 (prefoldin subunit 1-like [Cucurbita moschata])

HSP 1 Score: 216.1 bits (549), Expect = 6.8e-53
Identity = 121/129 (93.80%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNL+EL+QQDPGIA
Sbjct: 61  IGRAFVLEPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLKELVQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Carg22670 vs. NCBI nr
Match: XP_023536940.1 (prefoldin subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.1 bits (549), Expect = 6.8e-53
Identity = 122/129 (94.57%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLMAEQEQK KDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA
Sbjct: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Carg22670 vs. NCBI nr
Match: XP_022966081.1 (prefoldin subunit 1 [Cucurbita maxima])

HSP 1 Score: 213.8 bits (543), Expect = 3.4e-52
Identity = 120/129 (93.02%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLMAEQEQK KDSEAAIVSLQSSKEYLEKQKAEVENNL+ELLQQDPGIA
Sbjct: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSM+VA
Sbjct: 121 RQIMSMTVA 129

[Close]

BLAST of Carg22670 vs. NCBI nr
Match: XP_022929581.1 (prefoldin subunit 1-like [Cucurbita moschata])

HSP 1 Score: 202.6 bits (514), Expect = 7.7e-49
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ANRATFLEIQGRMIEITGKLKQVQ+Q+RNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSEAAI SL SSKEYLEKQ AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLEPKSVLMNEQEQKLKDSEAAIGSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMS+A
Sbjct: 121 RQIMSMSLA 129

[Close]

BLAST of Carg22670 vs. NCBI nr
Match: XP_023546624.1 (prefoldin subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 114/129 (88.37%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ANRATFLEIQGRMIEITGKLKQVQ+Q+RNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSEA I SL SSKEYLEKQ AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Carg22670 vs. TAIR10
Match: AT2G07340.1 (PREFOLDIN 1)

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-44
Identity = 95/128 (74.22%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEA RA F+EIQ  MIE+TGKLKQVQ+Q+RNKEG++KRAFLTLEEL+ L ++TN YKS
Sbjct: 1   MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPK+VL  EQEQK KDSEAA+ SLQ+SKEYLEKQ AEVENNLRELLQQ+PGIA
Sbjct: 61  IGRTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIA 120

Query: 121 RQIMSMSV 123
           +QIMSMS+
Sbjct: 121 QQIMSMSM 128

[Close]

BLAST of Carg22670 vs. Swiss-Prot
Match: sp|Q3SZE2|PFD1_BOVIN (Prefoldin subunit 1 OS=Bos taurus OX=9913 GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIEPKSV 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +    +
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LMAEQE------QKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
           L +++       +K K +E  I  L+  K YLE+   E E+N+RE+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEXXKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Carg22670 vs. Swiss-Prot
Match: sp|Q9CWM4|PFD1_MOUSE (Prefoldin subunit 1 OS=Mus musculus OX=10090 GN=Pfdn1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSI----- 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +     
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  -EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
            + K V+  +  +K K ++  I  L+  K YLE+   E E+N+RE+L
Sbjct: 70  LQSKEVIHNQLLEKQKIAKEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Carg22670 vs. Swiss-Prot
Match: sp|Q5RAM7|PFD1_PONAB (Prefoldin subunit 1 OS=Pongo abelii OX=9601 GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIEPKSV 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +    +
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LMAEQE------QKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
           L +++       +K K +E  I  L+  K YLE+   E E+N+RE+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEXXKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Carg22670 vs. Swiss-Prot
Match: sp|O60925|PFD1_HUMAN (Prefoldin subunit 1 OS=Homo sapiens OX=9606 GN=PFDN1 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 33/107 (30.84%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSI----- 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +     
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  -EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
            + K  + ++  +K K +E  I  L+    YLE+   E E+N+RE+L
Sbjct: 70  LQSKEAIHSQLLEKQKIAEEKIKELEXXXSYLERSVKEAEDNIREML 116

[Close]

BLAST of Carg22670 vs. Swiss-Prot
Match: sp|Q54JS0|PFD1_DICDI (Probable prefoldin subunit 1 OS=Dictyostelium discoideum OX=44689 GN=pfdn1 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 26/110 (23.64%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 6   NRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS----- 65
           ++  F E + ++  ++  L  ++ +++  E ++K+  +T+ EL+ LS +T  YK+     
Sbjct: 5   DKQAFFETREKLYTLSRSLNIIKQRIQIAENDRKKCLITINELESLSSETKTYKAVGKMF 64

Query: 66  -IEPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQ 110
            I P + L  E +Q+ +  E  +  L +  +Y++ Q  + E +L EL+++
Sbjct: 65  VISPMTSLKTELKQQVQKDEEDVKGLINQSKYIDAQITDTERSLNELVRK 114

[Close]

BLAST of Carg22670 vs. TrEMBL
Match: tr|A0A0A0LJF7|A0A0A0LJF7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070850 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.7e-48
Identity = 111/129 (86.05%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE NRATFLEIQGRMIEITGKLKQ+Q+Q+RNKEGEKKRAFLTLEELKQL++DTN YKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      E KSVLM EQEQKFKDSE AI SLQSSKEYLEKQ AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Carg22670 vs. TrEMBL
Match: tr|A0A2I4EVP4|A0A2I4EVP4_9ROSI (prefoldin subunit 1 OS=Juglans regia OX=51240 GN=LOC108993147 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.3e-46
Identity = 106/128 (82.81%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRA F+EIQGRMIEITGKLKQVQ Q+RNKEGEKKRAFLTLEEL+QLSDD N YKS
Sbjct: 1   MADEANRAAFIEIQGRMIEITGKLKQVQIQLRNKEGEKKRAFLTLEELRQLSDDANTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSE AI SLQ+SKEYLEKQ+AEVENN RELLQQDPG+A
Sbjct: 61  IGRTFFLEPKSVLMNEQEQKLKDSETAIASLQTSKEYLEKQRAEVENNFRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIMSM+V
Sbjct: 121 RQIMSMTV 128

[Close]

BLAST of Carg22670 vs. TrEMBL
Match: tr|A0A2G9GHY4|A0A2G9GHY4_9LAMI (Molecular chaperone Prefoldin, subunit 1 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22564 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.9e-46
Identity = 106/128 (82.81%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANR  FLEIQGRMIE TGKLKQVQ+Q+RNKEGEKKRA+LTLEELKQLSDDTN YKS
Sbjct: 1   MADEANRTAFLEIQGRMIETTGKLKQVQNQLRNKEGEKKRAYLTLEELKQLSDDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSEAA+ SLQ+SK+YLEKQ AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFILEPKSVLMEEQEQKLKDSEAAMSSLQTSKQYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIM+MSV
Sbjct: 121 RQIMAMSV 128

[Close]

BLAST of Carg22670 vs. TrEMBL
Match: tr|A0A2P4IPN7|A0A2P4IPN7_QUESU (Prefoldin subunit 1 OS=Quercus suber OX=58331 GN=CFP56_67478 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.6e-45
Identity = 105/128 (82.03%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRA F+EIQGRMIE TGKLKQVQ+Q+RNKEGEKKRAFLTLEEL+QLS+DTN YKS
Sbjct: 1   MADEANRAAFMEIQGRMIETTGKLKQVQNQMRNKEGEKKRAFLTLEELRQLSNDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSE AI SLQ+SKEYLE Q AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKSVLMNEQEQKLKDSETAIASLQASKEYLENQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIMSM+V
Sbjct: 121 RQIMSMTV 128

[Close]

BLAST of Carg22670 vs. TrEMBL
Match: tr|A0A061FRM5|A0A061FRM5_THECC (Prefoldin 1 OS=Theobroma cacao OX=3641 GN=TCM_044384 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.6e-45
Identity = 104/128 (81.25%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE N+  FLEIQGRMIE+TGKLKQVQ+Q+RNKEGEKKRA+LTLEEL+QLSDDTN YKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRNKEGEKKRAYLTLEELRQLSDDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPK VLM EQEQK KDSE+AI SLQ+SKEYLEKQ AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKPVLMNEQEQKLKDSESAIASLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

The following BLAST results are available for this feature:

BLAST of Carg22670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937756.1	6.8e-53	93.80	prefoldin subunit 1-like [Cucurbita moschata]	[more]
XP_023536940.1	6.8e-53	94.57	prefoldin subunit 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022966081.1	3.4e-52	93.02	prefoldin subunit 1 [Cucurbita maxima]	[more]
XP_022929581.1	7.7e-49	88.37	prefoldin subunit 1-like [Cucurbita moschata]	[more]
XP_023546624.1	1.0e-48	88.37	prefoldin subunit 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg22670 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07340.1	5.3e-44	74.22	PREFOLDIN 1	[more]

BLAST of Carg22670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3SZE2\|PFD1_BOVIN	7.2e-06	31.78	Prefoldin subunit 1 OS=Bos taurus OX=9913 GN=PFDN1 PE=2 SV=1	[more]
sp\|Q9CWM4\|PFD1_MOUSE	7.2e-06	31.78	Prefoldin subunit 1 OS=Mus musculus OX=10090 GN=Pfdn1 PE=1 SV=1	[more]
sp\|Q5RAM7\|PFD1_PONAB	7.2e-06	31.78	Prefoldin subunit 1 OS=Pongo abelii OX=9601 GN=PFDN1 PE=2 SV=1	[more]
sp\|O60925\|PFD1_HUMAN	2.7e-05	30.84	Prefoldin subunit 1 OS=Homo sapiens OX=9606 GN=PFDN1 PE=1 SV=2	[more]
sp\|Q54JS0\|PFD1_DICDI	5.2e-04	23.64	Probable prefoldin subunit 1 OS=Dictyostelium discoideum OX=44689 GN=pfdn1 PE=3 ...	[more]

BLAST of Carg22670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJF7\|A0A0A0LJF7_CUCSA	5.7e-48	86.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070850 PE=4 SV=1	[more]
tr\|A0A2I4EVP4\|A0A2I4EVP4_9ROSI	5.3e-46	82.81	prefoldin subunit 1 OS=Juglans regia OX=51240 GN=LOC108993147 PE=4 SV=1	[more]
tr\|A0A2G9GHY4\|A0A2G9GHY4_9LAMI	6.9e-46	82.81	Molecular chaperone Prefoldin, subunit 1 OS=Handroanthus impetiginosus OX=429701...	[more]
tr\|A0A2P4IPN7\|A0A2P4IPN7_QUESU	2.6e-45	82.03	Prefoldin subunit 1 OS=Quercus suber OX=58331 GN=CFP56_67478 PE=4 SV=1	[more]
tr\|A0A061FRM5\|A0A061FRM5_THECC	2.6e-45	81.25	Prefoldin 1 OS=Theobroma cacao OX=3641 GN=TCM_044384 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016272	prefoldin complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **INTERPRO**
Term	Definition
IPR009053	Prefoldin
IPR002777	PFD_beta-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22670-RA	Carg22670-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..109
None	No IPR available	COILS	Coil	Coil	coord: 31..51
None	No IPR available	PANTHER	PTHR20903	PREFOLDIN SUBUNIT 1-RELATED	coord: 1..115
None	No IPR available	SUPERFAMILY	SSF46579	Prefoldin	coord: 10..108
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 13..109 e-value: 1.1E-9 score: 38.1
IPR009053	Prefoldin	GENE3D	G3DSA:1.10.287.370		coord: 8..112 e-value: 9.6E-7 score: 30.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22670	Cla005768	Watermelon (97103) v1	carwmB0008
Carg22670	Csa2G070850	Cucumber (Chinese Long) v2	carcuB0005
Carg22670	MELO3C003910	Melon (DHL92) v3.5.1	carmeB0004
Carg22670	ClCG11G011210	Watermelon (Charleston Gray)	carwcgB0006
Carg22670	CSPI02G06820	Wild cucumber (PI 183967)	carcpiB0005
Carg22670	Cucsa.178890	Cucumber (Gy14) v1	carcgyB0005
Carg22670	CmaCh12G009360	Cucurbita maxima (Rimu)	carcmaB0008
Carg22670	CmoCh12G009370	Cucurbita moschata (Rifu)	carcmoB0008
Carg22670	CmoCh05G007760	Cucurbita moschata (Rifu)	carcmoB0009
Carg22670	Lsi11G008300	Bottle gourd (USVL1VR-Ls)	carlsiB004
Carg22670	Cp4.1LG07g07680	Cucurbita pepo (Zucchini)	carcpeB0007
Carg22670	Cp4.1LG11g06640	Cucurbita pepo (Zucchini)	carcpeB0005
Carg22670	CsGy2G006990	Cucumber (Gy14) v2	carcgybB0004
Carg22670	MELO3C003910.2	Melon (DHL92) v3.6.1	carmedB0005
Carg22670	CsaV3_2G009230	Cucumber (Chinese Long) v3	carcucB0005
Carg22670	Bhi06G001029	Wax gourd	carwgoB0006

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22670	Carg19821	Silver-seed gourd	carcarB004

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22670	Wax gourd	carwgoB0005
Carg22670	Cucurbita maxima (Rimu)	carcmaB0009
Carg22670	Watermelon (97103) v2	carwmbB0004