Cucsa.178890 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.178890
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Prefoldin subunit, putative
Location	scaffold01227 : 1289573 .. 1293889 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCGTTTACGCGAGCTCCGATCTCCGAAATGGCGGACGAGGTGAACAGAGCTGTGAGTACTTTTACTATTTTAATCTTGCTTTTCCTCTCACAACTCATATGTTTCCGATGCATTAGCCTTTGGTTTTCTTTTCTCCAATCAGACTTTCTTGGAAATTCAAGGTCGCATGATTGAAATTACTGGAAAGCTGAAGCAGGTAAATTCCCTTTCGTTTATTGGACTTACTGGGATTTTTTTAGTTTGATCTTTTGCGCCTATAGGAGTGAAAGGTTTTTGTAATTCTTGTCTGGATTCGTCTTACTTCCAGCTTTGGTGCTGATGATTGGAATGCTTATTCTTTTTCTCAGTATTTAGTAAGGACACCTTCGAATCTAGGTTAATATTGTAAGTGGTACAATTACAAAAGTTCATAAAAGCATTCTAGAAAATAAAAATCATTTGAAAAATCTATCGCATTTCTTTCCTGTATAGCTGTCCAAGGAGAGTTAATATCATCATTTGGGTTATGCTTTTTGGGTCTCTTAATTGTAAAAAAGACTCTTCTAAGGAATTTTTCAAATCATTCACTTTTTCCCTCAATTTTCCCTCTATGCATGAATTACTAAAACCATTATCGCGACTTCCATATGCTCATGTTTTCTTTTCTTTGTTTAGTGTGAATGTTCTTTTGATTAACTAGATCCAAAACAGTAGGATGAGTAGGGAAAAGAAAAAATGAGCACATGGAAGTCGCGGAGATGGTTTTGGTAGTTAATGAGACTAAAAGAGTTTGGAAGATAAAGATGAAGATGAAGATTATTACTCTGACTTCTTTAGGTCCTCTTTTTGAGGAACTGTTTCAATCTAGGGGCTTTTTTTTTATAACTTCTTTATTCATGATGAACAATTTTACTTGCTATGACCTCCATTTCTATAGCAATGTCATCACAAAGCATTCTAGTTTCAAGTTCACTATCATCTACTCTCTCAACCCCACTACTACTAACACATCTTTCTCCATTAATAAGTGGTTCAAAGTATTGGTAAGATTACAATCATGTAATTCCTTGCTATCTAATGACTTTCTAGGTTAAACATGACTCTCATGCATAGGTGCAACATGCGCTTCTTTTAACTACTTTCTACCTTAACAATGTATGGTAGGTTAAGTAAGAATTTCTAGTAATAGTTGGCATTGAAACTAGACTTAGATTTAGTGTACCTTGAAGATCTCCATACCTTTCTATCTTGATGGCACCACAAATCCTCACAAGGTGATTTTTTTTTTCAATTAGCAAACATCTCGACAATCTTCTCATCAAGTTCTTTGTAGAATCGGTCCGTGGTAGCTTCCTCATGCTCATAATTTGCAATTTTCTACACTTTTGCTCTCTTGTTTCAAATTTTGCAATTTATGGACTCGTTAGAAGCTTTTGATATCTTTCTGCGAAGGTAGTGCATGCTTTTCCACTTCTCATGAGAAGCATATTTCTCAAATGTAGACTATAAGTTCTACCTTTTCACCATATGAAATCCATATCCCTTGTGAATTGGAAACAAAAACCCTTTTTGGGTATGTTAACTCTCAATTCTCAAACACCAAGACCCTCAATTGATCCGTTTTTAACCTTAAGGATCGAGTTAGACATGAATTGCCTTGTGAAGCAAGTTCACGAGACAGAACAAGGTCCTTAATCTGGGGTTCAAGCACTCCACAAGATAGGATGATCAATCCTGCTCACTACTCAAACAACAAGATAGGATAACCAATCATGCTTAAATGTTCTTGGCATGCAACTCAACACTTAAATTGCAAAATTCAAAAAGCTATCTTGGTTGAACTTGAAAGAAAAAGCACCAAAGCTAAAACTCAATTGATATGATCGTGATCTTCTCAAAATGACTTAAACAGTCTTCCATTAAAATGCATCATAGATCATAGATCATAGCAAAATGACAATACCCTACTTATTGGAAAATAATAAAATTACATTCAAATTATTAAAAGAAAATTATAAATAGTAATTTGATGTCACAGTTTATATCGGAATTTCAGGAACATAACATGGCATAGTGTCTAAGGCAAGTCTTAAACGCTCAAGATTAAGTTCCAGATGCACTGATGCAGTTTCTGTCTTTTGTGCATTACAAATTAGTTCTTTGTCAGTCTTCTACGTCACTTTATCTGAACAGAGAAATTTTTTACTTTATGAGTTAAAACTGGTCTTTTCCTTTCTTTACAGTTGCAAACCCAGATACGAAACAAGGAGGGAGAGAAGAAGCGCGCTTTTTTGACCTTGGAGGAACTTAAACAGTTGGCTGAAGACACTAATACATACAAATCTATAGGTACTTATCAAAGCTTTATTTTTAACCGGAAGCTTGTTCATCCTTAGTCTAAATCATGATTCTGGCAGAACGTGTAATAGTAAAACCTTGTTAGATTCACTTTACTTATCACTGATTTCCTTTCATCATTTTTTGTGGTGCAGGGAGAACGTGAGTTATGTTGCAATTAAGTGATCGACTTAAAGTTTAGATCTTTCATTTCCCATACTGTACAGATGAAATCCTCTTACTTTGTGTTGCTTCGTCCTGACCAGGTTTGTTTTAGAGTCAAAGTCAGTTCTAATGAATGAGCAGGAGCAAAAGTTCAAGGATAGTGAAACGGCAATTGCCTCGCTCCAGGTACATATTAAAATTAGTTTCCTCTGCAGAGACGGGACATCTACTTTTTTATTCCCAATTGTGTATACATGTCATTGACGTTGTCTCTTTTTTAAGATTTAGTTGCATTTGACTTCACTAAATAACATGTTCTTGCCCTTCCTAGTTGTATATTTTCTTGCCTTCACTAATTCTGACTTCAGTACATACGTTTAAATTTATCCACACATGCACATAGGCTATTTTCTTCTATCATTTCTTGGGATTTCCACACATTTATCTCGATTGAGTCAATTTGACATTTTTCCACTCTTTTTTGTGTGAATGAATTTCAAACTCTAGCCCTCCAAATAAAGTTTGCTGAAGAGTTTGAATGTTGGATGCCAGCGATATTATTTTTATTCTTGGCATTTTACTAAGCAAACTGTTAAATCTCCAATTCCTCATACATATAAAAGGAGGGCCAAGAAGGGAAATGCACCCGATGATATGAGTTCAGGTGAGGCCAATGGAGAGGATGGAAATACCTGAGGGTTCCACCTGGTTGGCAATATAAATAAAGAATGTTTTGGGGATCAATATTTTTAGGTTTTATTTGGTAAAAAGCTGCTGTGAGCTTTAAGGACAGAGGATTCCAGTCTTCGGAAGGAGCTGATTATTTCTTTATTTGTTTGTTCTTGCCTTCCATTTGTGTTCTTTTTTAGATTCTATTTTGGCTTTTTGAACTGGTGATATTATTGCAATATATATTAAGCAGAGTATTGTCTCTGTTTTAGCCATGCTCAGGTTAAGGGAGTCTTAACACAAACTTATTCCTCTGTTTTTACCCCTTCTTTCCCTTTTATCTCAAATTACTTGTGTAAGTAACATTATAACTGGTGGAAGTGTCCTTGAGATTTGGAATGCAGTGTACTTTCAATGTTTCCCTTTGAACTTTCTTAGAGGTATTCTTATATGTATATATAATGATATTCTTGTTTTATCTTGGACAAACGTCATGAAAGATGGTTTTGTTGAACATATGCAGAGCTCAAAGGAGTATTTAGAGAAGCAGATGGCTGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCTATGTCTGTAGCATAGGGCAGGCAGGGTCTTCCCCCCTCTTGGATGATTTGACATTAACTCAACTTTTTAATTTTTAATTTTTAATGTTCACATTCTTGGGTAAGAAATTATTTCGCTGGTTTAGTGTTGTGAGTTTTGATTCCACCTGGTTAGCTTCTATAATTTCTGATGCCCAAAACTTTGTTTCATATGCATTTCATACTCCTAAGTGCCGAACTCTGTCTTTGTGCTGTTTTTGTGGTTTTTAGTTTTGGTTAAATTACAAATGTCAATGTGATCTAGTGAAAGTTAGATTTTAGTCTATAGCTTTCTAAATAGTCCCTTCAATAGGTATTATTTATGGAAATTTTATCAAACCTTTGAAACTATTTATGAGACTAAATTATAAGTACTTTTTCTTAAGTATAAAAACTAATTTCTAATTTTCTCCCTAGGTATCAAATTTGCAATTTAACATAGAAGTTTGAAGGTTAAGATGCAAGTAGCCTTGTTGGTTGAAACTTGATTGCAAACACTTAGAGTAGTCGATCAAAATAAAAATTT

mRNA sequence

CATCGTTTACGCGAGCTCCGATCTCCGAAATGGCGGACGAGGTGAACAGAGCTACTTTCTTGGAAATTCAAGGTCGCATGATTGAAATTACTGGAAAGCTGAAGCAGTTGCAAACCCAGATACGAAACAAGGAGGGAGAGAAGAAGCGCGCTTTTTTGACCTTGGAGGAACTTAAACAGTTGGCTGAAGACACTAATACATACAAATCTATAGGGAGAACGTTTGTTTTAGAGTCAAAGTCAGTTCTAATGAATGAGCAGGAGCAAAAGTTCAAGGATAGTGAAACGGCAATTGCCTCGCTCCAGAGCTCAAAGGAGTATTTAGAGAAGCAGATGGCTGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCTATGTCTGTAGCATAGGGCAGGCAGGGTCTTCCCCCCTCTTGGATGATTTGACATTAACTCAACtttttaatttttaatttttaatGTTCACATTCTTGGGTAAGAAATTATTTCGCTGGTTTAGTGTTGTGAGTTTTGATTCCACCTGGTTAGCTTCTATAATTTCTGATGCCCAAAACTTTGTTTCATATGCATTTCATACTCCTAAGTGCCGAACTCTGTCTTTGTGCTGTTTTTGTGGTTTTTAGTTttggttaaattacaaatgtcaatgtgatctagtgaaagttagattttagtctatagctttctaaatagtcccttcaataggtattatttatggaaattttatcaaacctttgaaactatttatgagactaaattataagtactttttcttaagtataaaaactaatttctaattttctccctaggtatcaaatttgcaatttaacatagaagtttGAAGGTTAAGATGCAAGTAGCCTTGTTGGTTGAAACTTGATTGCAAACACTTAGAGTAGTCGATCAAAATAAAAATTT

Coding sequence (CDS)

ATGGCGGACGAGGTGAACAGAGCTACTTTCTTGGAAATTCAAGGTCGCATGATTGAAATTACTGGAAAGCTGAAGCAGTTGCAAACCCAGATACGAAACAAGGAGGGAGAGAAGAAGCGCGCTTTTTTGACCTTGGAGGAACTTAAACAGTTGGCTGAAGACACTAATACATACAAATCTATAGGGAGAACGTTTGTTTTAGAGTCAAAGTCAGTTCTAATGAATGAGCAGGAGCAAAAGTTCAAGGATAGTGAAACGGCAATTGCCTCGCTCCAGAGCTCAAAGGAGTATTTAGAGAAGCAGATGGCTGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCTATGTCTGTAGCATAG

Protein sequence

MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKSIGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIARQIMSMSVA*

Homology

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BLAST of Cucsa.178890 vs. Swiss-Prot
Match: PFD1_BOVIN (Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.8e-15
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKSIGRTFV 66
           +  F E+Q ++I+   K+K    QI      KK A LT  E+  L ++TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELL 114
           L+SK  + N+  +K K +E  I  L+  K YLE+ + E E+N+RE+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Cucsa.178890 vs. Swiss-Prot
Match: PFD1_PONAB (Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.8e-15
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKSIGRTFV 66
           +  F E+Q ++I+   K+K    QI      KK A LT  E+  L ++TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELL 114
           L+SK  + N+  +K K +E  I  L+  K YLE+ + E E+N+RE+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Cucsa.178890 vs. Swiss-Prot
Match: PFD1_MOUSE (Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.8e-15
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKSIGRTFV 66
           +  F E+Q ++I+   K+K    QI      KK A LT  E+  L ++TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELL 114
           L+SK V+ N+  +K K ++  I  L+  K YLE+ + E E+N+RE+L
Sbjct: 70  LQSKEVIHNQLLEKQKIAKEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Cucsa.178890 vs. Swiss-Prot
Match: PFD1_HUMAN (Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-14
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKSIGRTFV 66
           +  F E+Q ++I+   K+K    QI      KK A LT  E+  L ++TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELL 114
           L+SK  + ++  +K K +E  I  L+  K YLE+ + E E+N+RE+L
Sbjct: 70  LQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Cucsa.178890 vs. Swiss-Prot
Match: PFD1_DANRE (Prefoldin subunit 1 OS=Danio rerio GN=pfdn1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-12
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKSIGRTFV 66
           +  F E+Q +M++   K+K    QI      KK A LT  E+  L E T  ++  GR F+
Sbjct: 10  KKAFAELQAKMVDTQQKVKLADLQIEQLSRVKKHANLTHGEITSLPESTRMFEGAGRMFI 69

Query: 67  LESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELL 114
           L+SK  + N+  +K K ++  I  L+  K YLE+ + + E+N+RE+L
Sbjct: 70  LQSKGEISNQLLEKQKTADDKIKELEQKKTYLERSVKDAEDNIREML 116

[Close]

BLAST of Cucsa.178890 vs. TrEMBL
Match: A0A0A0LJF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070850 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.9e-62
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120
           IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 130
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Cucsa.178890 vs. TrEMBL
Match: A0A061FRM5_THECC (Prefoldin 1 OS=Theobroma cacao GN=TCM_044384 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-54
Identity = 111/128 (86.72%), Postives = 122/128 (95.31%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MADEVN+  FLEIQGRMIE+TGKLKQ+Q Q+RNKEGEKKRA+LTLEEL+QL++DTNTYKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRNKEGEKKRAYLTLEELRQLSDDTNTYKS 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120
           IGRTFVLE K VLMNEQEQK KDSE+AIASLQ+SKEYLEKQMAEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKPVLMNEQEQKLKDSESAIASLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 129
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

[Close]

BLAST of Cucsa.178890 vs. TrEMBL
Match: M1B245_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013569 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-53
Identity = 110/129 (85.27%), Postives = 120/129 (93.02%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MADE NR  F+EIQGRMIE TGKLKQ+QTQIRNKE EKKRA+LTLEELKQL++DTNTYK+
Sbjct: 1   MADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKA 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120
           IGRTFVLE K+VLMNEQEQK KD ETAIASLQ+SKEYLEK MAEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSVA 130
           RQIM+MSVA
Sbjct: 121 RQIMTMSVA 129

[Close]

BLAST of Cucsa.178890 vs. TrEMBL
Match: A0A0D2UW73_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G302200 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.4e-53
Identity = 109/128 (85.16%), Postives = 119/128 (92.97%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MADEVN+  FLEIQGRMIE+TGKLKQ+Q Q+R KEGEKKRAFLTLEEL QL +DTNTYKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRTKEGEKKRAFLTLEELNQLPDDTNTYKS 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120
           IGRTFVLE KSVL+NEQEQK KDSE+AI SLQSSKEY+EKQ+AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKSVLVNEQEQKLKDSESAIGSLQSSKEYMEKQLAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 129
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

[Close]

BLAST of Cucsa.178890 vs. TrEMBL
Match: K4CEC3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.7e-52
Identity = 107/126 (84.92%), Postives = 117/126 (92.86%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MADE NR  F+EIQGRMIE TGKLKQ+QTQIRNKE EKKRA+LTLEELKQL++DTNTYK+
Sbjct: 1   MADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKA 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120
           IGRTFVLE K+VLMNEQEQK KD ETAIASLQ+SKEYLEK MAEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSM 127
           RQIM+M
Sbjct: 121 RQIMTM 126

[Close]

BLAST of Cucsa.178890 vs. TAIR10
Match: AT2G07340.1 (AT2G07340.1 PREFOLDIN 1)

HSP 1 Score: 198.7 bits (504), Expect = 2.1e-51
Identity = 100/128 (78.12%), Postives = 115/128 (89.84%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MADE  RA F+EIQ  MIE+TGKLKQ+Q Q+RNKEG++KRAFLTLEEL+ L E+TNTYKS
Sbjct: 1   MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKS 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120
           IGRTFVLE K+VL  EQEQK KDSE A+ASLQ+SKEYLEKQ+AEVENNLRELLQQ+PGIA
Sbjct: 61  IGRTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIA 120

Query: 121 RQIMSMSV 129
           +QIMSMS+
Sbjct: 121 QQIMSMSM 128

[Close]

BLAST of Cucsa.178890 vs. NCBI nr
Match: gi|449470285|ref|XP_004152848.1| (PREDICTED: prefoldin subunit 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.6e-62
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120
           IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 130
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Cucsa.178890 vs. NCBI nr
Match: gi|659069519|ref|XP_008450462.1| (PREDICTED: probable prefoldin subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 1.9e-57
Identity = 120/128 (93.75%), Postives = 124/128 (96.88%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MA+E NR TFLEIQGRMIEITGKLKQLQTQIR KEGEKKRAFLTLEELKQL+EDTNTYKS
Sbjct: 1   MANEANRDTFLEIQGRMIEITGKLKQLQTQIRGKEGEKKRAFLTLEELKQLSEDTNTYKS 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120
           IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLE+QMAEVENNLRELLQ DPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIA 120

Query: 121 RQIMSMSV 129
           RQIMSMS+
Sbjct: 121 RQIMSMSI 128

[Close]

BLAST of Cucsa.178890 vs. NCBI nr
Match: gi|449470287|ref|XP_004152849.1| (PREDICTED: prefoldin subunit 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 7.1e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGI 120
           IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGI
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGI 119

[Close]

BLAST of Cucsa.178890 vs. NCBI nr
Match: gi|590567402|ref|XP_007010507.1| (Prefoldin 1 [Theobroma cacao])

HSP 1 Score: 219.9 bits (559), Expect = 2.5e-54
Identity = 111/128 (86.72%), Postives = 122/128 (95.31%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MADEVN+  FLEIQGRMIE+TGKLKQ+Q Q+RNKEGEKKRA+LTLEEL+QL++DTNTYKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRNKEGEKKRAYLTLEELRQLSDDTNTYKS 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120
           IGRTFVLE K VLMNEQEQK KDSE+AIASLQ+SKEYLEKQMAEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKPVLMNEQEQKLKDSESAIASLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 129
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

[Close]

BLAST of Cucsa.178890 vs. NCBI nr
Match: gi|720093672|ref|XP_010246123.1| (PREDICTED: prefoldin subunit 1 [Nelumbo nucifera])

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-53
Identity = 111/128 (86.72%), Postives = 120/128 (93.75%), Query Frame = 1


Query: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60
           MADE NR  FLEIQGRMIEITGKLKQ+Q Q+RNKEGEKKRAFLTLEEL+QL +DTNTYKS
Sbjct: 1   MADETNRTAFLEIQGRMIEITGKLKQVQNQMRNKEGEKKRAFLTLEELRQLTDDTNTYKS 60

Query: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120
           IGRTFVLE KSVL+ EQEQK KDSETAIASLQ+SKEYLEKQMAEVE+NLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKSVLVKEQEQKLKDSETAIASLQTSKEYLEKQMAEVESNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 129
           RQIMSM+V
Sbjct: 121 RQIMSMTV 128

The following BLAST results are available for this feature:

BLAST of Cucsa.178890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PFD1_BOVIN	6.8e-15	37.38	Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1	[more]
PFD1_PONAB	8.8e-15	37.38	Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1	[more]
PFD1_MOUSE	8.8e-15	37.38	Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=1 SV=1	[more]
PFD1_HUMAN	3.4e-14	36.45	Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2	[more]
PFD1_DANRE	1.4e-12	34.58	Prefoldin subunit 1 OS=Danio rerio GN=pfdn1 PE=2 SV=1	[more]

BLAST of Cucsa.178890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJF7_CUCSA	3.9e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070850 PE=4 SV=1	[more]
A0A061FRM5_THECC	1.8e-54	86.72	Prefoldin 1 OS=Theobroma cacao GN=TCM_044384 PE=4 SV=1	[more]
M1B245_SOLTU	1.5e-53	85.27	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013569 PE=4 SV=1	[more]
A0A0D2UW73_GOSRA	4.4e-53	85.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G302200 PE=4 SV=1	[more]
K4CEC3_SOLLC	3.7e-52	84.92	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Cucsa.178890 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07340.1	2.1e-51	78.13	PREFOLDIN 1	[more]

BLAST of Cucsa.178890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470285\|ref\|XP_004152848.1\|	5.6e-62	100.00	PREDICTED: prefoldin subunit 1 isoform X1 [Cucumis sativus]	[more]
gi\|659069519\|ref\|XP_008450462.1\|	1.9e-57	93.75	PREDICTED: probable prefoldin subunit 1 isoform X1 [Cucumis melo]	[more]
gi\|449470287\|ref\|XP_004152849.1\|	7.1e-57	100.00	PREDICTED: prefoldin subunit 1 isoform X2 [Cucumis sativus]	[more]
gi\|590567402\|ref\|XP_007010507.1\|	2.5e-54	86.72	Prefoldin 1 [Theobroma cacao]	[more]
gi\|720093672\|ref\|XP_010246123.1\|	1.3e-53	86.72	PREDICTED: prefoldin subunit 1 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002777	PFD_beta-like
IPR009053	Prefoldin

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016272	prefoldin complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.178890.1	Cucsa.178890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 13..115 score: 1.4
IPR009053	Prefoldin	GENE3D	G3DSA:1.10.287.370		coord: 12..116 score: 2.1
IPR009053	Prefoldin	unknown	SSF46579	Prefoldin	coord: 10..114 score: 7.06
None	No IPR available	unknown	Coil	Coil	coord: 17..51 score: -coord: 74..115 scor
None	No IPR available	PANTHER	PTHR20903	PREFOLDIN SUBUNIT 1-RELATED	coord: 1..128 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.178890	Cla005768	Watermelon (97103) v1	cgywmB341
Cucsa.178890	Csa2G070850	Cucumber (Chinese Long) v2	cgycuB274
Cucsa.178890	MELO3C003910	Melon (DHL92) v3.5.1	cgymeB320
Cucsa.178890	ClCG11G011210	Watermelon (Charleston Gray)	cgywcgB319
Cucsa.178890	CSPI02G06820	Wild cucumber (PI 183967)	cgycpiB284
Cucsa.178890	CmaCh12G009360	Cucurbita maxima (Rimu)	cgycmaB0509
Cucsa.178890	CmoCh05G007760	Cucurbita moschata (Rifu)	cgycmoB0510
Cucsa.178890	CmoCh12G009370	Cucurbita moschata (Rifu)	cgycmoB0509
Cucsa.178890	Lsi11G008300	Bottle gourd (USVL1VR-Ls)	cgylsiB300
Cucsa.178890	Cp4.1LG11g06640	Cucurbita pepo (Zucchini)	cgycpeB0491
Cucsa.178890	Cp4.1LG07g07680	Cucurbita pepo (Zucchini)	cgycpeB0492
Cucsa.178890	MELO3C003910.2	Melon (DHL92) v3.6.1	cgymedB315
Cucsa.178890	CsaV3_2G009230	Cucumber (Chinese Long) v3	cgycucB287
Cucsa.178890	Bhi06G001029	Wax gourd	cgywgoB367
Cucsa.178890	Carg22670	Silver-seed gourd	carcgyB0005
Cucsa.178890	Carg19821	Silver-seed gourd	carcgyB0204

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.178890	Watermelon (97103) v2	cgywmbB323
Cucsa.178890	Wax gourd	cgywgoB366
Cucsa.178890	Cucurbita maxima (Rimu)	cgycmaB0510