Cp4.1LG11g06640 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g06640
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Prefoldin subunit 1
Location	Cp4.1LG11 : 4385388 .. 4388483 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAATTTGAAAATTAGATCCGACCCGGTAGATCACACTTATATTGGACCCTAAAAGACTGAAAACGTTCATTTTTGTATCAACACGTCCTCTCCGCGAGCTCTGAATCTTGGGAATGGCGGACGACGCGAACAGAGCTGTGAGTACTATTACTCTTTTACTCTTCTTTTTTCCCTTCCCTGCTGCCATTTTACATATGCATGAGCTTTTTTTTTTCCCCCTTGAATCAGACTTTCTTGGAAATCCAAGGTCGCATGATTGAGATTACTGGGAAGCTGAAGCAGGTAATTCCCTTTGGATTCACTTGAAGTATTTTAAGGTAATCTTTTGTATTTGTAGGAATGAAGGCTTTTAGTAATTCATGTCTGGATTGATCTTACAGGTGTTGTGCTGATGATTAAAAGCTTCTTATTTTTCTTCGTATTTATTTAGTAATGTGAATGAATTTATCCTGGGTCAATTGCTGAATCTAATCAATGTTTGTTTCTTGTTTCTTGTACATTTATTTGATGTTTAATCGTTTTCTTTTTCCTTTTTTTCTTAGTACATTTATTTAGTAAAATCCATAGAAGAATGTTAATTCCTTACTACATTTAGATTTCCGAATATCTCTGAAAAATCCTTTTACAATGAAGATGAAGATGCTAGCTTCCTCAATAATCACTTCACCATAAAAAATGGAGGGAAACATCACCTTTAGAGGCTGGTTGGTGATCCACTTATCTTCTCAAAAAGGAATATCTTAGCCATCACCAACCTTGTAAACATACATTTTTCCAGAAAAAGCTACTGGTCTTCATAGTCTCCTTCCAAGGGCCTAAGGAGCCCTTGCAATCAACTTTGTTGGCCAAAGTTTTAATTTCACCACTAATCTCCAGAGAGCGTTTTTTCTCTTCAAATGTTTATGCACAGCTGACATTTTCCATTGTCAGTCTCTTATCAAAGATGGTCTATTTTCTTTGTAATTTCACCACAAGTCTCTTTTTGAAGCTCTCTGACTTGGGTTAGTTTCTGGAATGTCAAATACATAATATATGGCATAGAGACTAAGGCATATCCTGATCATCTCAAGATTAAAATGCCGATGCGCCGTATATCTTTTGTGCATTTCAATATTAGTTCTTTGTCATTCTTCACGTTTCACTTTATCTGAACAGAGAATCCTTTCTTTGCAGGTGCAGACCCAAATAAGAAACAAGGAGGGAGAAAAGAAGCGCGCCTTTTTAACCTTGGAGGAACTCAAACAGTTGTCTGATGACACTAATGCATACAAATCTATAGGTGCTTAACAACAAAGCTTTGTTTTTTAACCGGAAGGTTCACTCTTAACCTAAATTATGATTAGCTGCCAAAACGTGTAATATTCTTTTTAGATTGACTGATACTTAGCACTGATTTACTTCCATCATTCTTTGTGGTGCAGGGAGAACGTGAGTTATGCTACAATAAGTAAACAACTTAAAGTTAGATTTTTTTTATTTCTCAAATGATACAGATGAAATTCTCTTACTTTGTGTGGTGTGGTCTCATTCTCACCAGGTTTGTTTTAGAGCCAAAGTCAGTTCTAATGAATGAACAGGAGCAAAAGCTAAAGGATAGTGAAGCTACAATTGATTCACTGCATGTACGTATTAGTATTACTTTCCTCTGTAGATACACAAAACCTTCCTTTGAACTTCCCAATTTTGTATGCCTGTCATTCACGTAGTCTTTTCTTGATTCAATTACGTTTGCCTTCAACCTTCCTTTGAACTTCCCAATTTTGTATGCCTGTCATTCACGTAGTCTTTTCTTGATTCAATTACGTTTGCCTTCACCTTGTGTGTAACGGTCCAAGCCCATCGCTAGCAGATATTGTTCTCTTTGGGCTTCCCCTCAAGGTTTTTAAAACACGTATGCTAAGGAGAGATTTCCACACCCTTATAAAGAATGTTTCGTTTTCCTCCTCAACCGATGTGGGATCTCACAATCTCACCCCCTTTCGGGGCCCAGCGTCCTCACTGACACTCATTCCCTTCTCCAATCGATGTGGGACCCCTCAATCCACTCCTCTTTGGGGCCTAGCGTCCTTGCTGGCACATCGTCCCGTGTCCACCCCCCTTCGGTGTTCAGCCTCTTCGCTGGCACATCGCCCAGTGTCTATGCTTTGATACTATTTGTAACGGTCCAAGCCCACCGCTAGCATATATGAAAACACGTCTACTAGAGAGAGGTTTTCACACCTTTATAAAGAATGTTTCGTTCTCCTCTCCAACGAATGTGGATCTCACATTTCGCTTCTTAGTTAAATATTTTATTGCCTTTGCCAATTAGCATTGCTCTGTCATTTCAATTTTTGCATTAACACACTAACCAACCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCACCCTCCGGATCTTCCTTTTGCATTTTACAGTATTTAGAGATATTCTTGTTTTATCGTTCTTTCTCCATTCATGAAAGATGATCGATCTTCATGCACATTTGTAGAGCTCAAAGGAGTATTTGGAGAAGCAGTTGGCAGAGGTGGAGAACAACTTGAGGGAGCTGCTGCAACAAGATCCAGGTATAGCTCGTCAGATTATGTCCATGTCTGTAGCATAAGGCAGGCTCTCCCCCATTGGATTTGTGATTAGCTAAGCTTCTTGTATCATTGTTGGGTCAGAAGAATATGACTGGTGTGATGTTGCGAGGTGTGATTCTACTTGGCTGGCTTCTATTATTTCTGATGTCAAAACTTTGTTTTTGATATGCAATTCATACTCCCAAGTCCCACATTCTCATTTTAAAAACTGTTTAATAGGCCATTGTTTTCAACTTTTTGCTAATAGGTTCGTCCACTGTAAAAAAGTCGATCGGTGTCCATAAATGC

mRNA sequence

GTGAATTTGAAAATTAGATCCGACCCGGTAGATCACACTTATATTGGACCCTAAAAGACTGAAAACGTTCATTTTTGTATCAACACGTCCTCTCCGCGAGCTCTGAATCTTGGGAATGGCGGACGACGCGAACAGAGCTACTTTCTTGGAAATCCAAGGTCGCATGATTGAGATTACTGGGAAGCTGAAGCAGGTGCAGACCCAAATAAGAAACAAGGAGGGAGAAAAGAAGCGCGCCTTTTTAACCTTGGAGGAACTCAAACAGTTGTCTGATGACACTAATGCATACAAATCTATAGGGAGAACGTTTGTTTTAGAGCCAAAGTCAGTTCTAATGAATGAACAGGAGCAAAAGCTAAAGGATAGTGAAGCTACAATTGATTCACTGCATAGCTCAAAGGAGTATTTGGAGAAGCAGTTGGCAGAGGTGGAGAACAACTTGAGGGAGCTGCTGCAACAAGATCCAGGTATAGCTCGTCAGATTATGTCCATGTCTGTAGCATAAGGCAGGCTCTCCCCCATTGGATTTGTGATTAGCTAAGCTTCTTGTATCATTGTTGGGTCAGAAGAATATGACTGGTGTGATGTTGCGAGGTGTGATTCTACTTGGCTGGCTTCTATTATTTCTGATGTCAAAACTTTGTTTTTGATATGCAATTCATACTCCCAAGTCCCACATTCTCATTTTAAAAACTGTTTAATAGGCCATTGTTTTCAACTTTTTGCTAATAGGTTCGTCCACTGTAAAAAAGTCGATCGGTGTCCATAAATGC

Coding sequence (CDS)

ATGGCGGACGACGCGAACAGAGCTACTTTCTTGGAAATCCAAGGTCGCATGATTGAGATTACTGGGAAGCTGAAGCAGGTGCAGACCCAAATAAGAAACAAGGAGGGAGAAAAGAAGCGCGCCTTTTTAACCTTGGAGGAACTCAAACAGTTGTCTGATGACACTAATGCATACAAATCTATAGGGAGAACGTTTGTTTTAGAGCCAAAGTCAGTTCTAATGAATGAACAGGAGCAAAAGCTAAAGGATAGTGAAGCTACAATTGATTCACTGCATAGCTCAAAGGAGTATTTGGAGAAGCAGTTGGCAGAGGTGGAGAACAACTTGAGGGAGCTGCTGCAACAAGATCCAGGTATAGCTCGTCAGATTATGTCCATGTCTGTAGCATAA

Protein sequence

MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIARQIMSMSVA

Homology

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BLAST of Cp4.1LG11g06640 vs. Swiss-Prot
Match: PFD1_BOVIN (Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.8e-13
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRTFV 66
           +  F E+Q ++I+   K+K    QI      KK A LT  E+  L D+TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELL 114
           L+ K  + N+  +K K +E  I  L   K YLE+ + E E+N+RE+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Cp4.1LG11g06640 vs. Swiss-Prot
Match: PFD1_PONAB (Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.3e-13
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRTFV 66
           +  F E+Q ++I+   K+K    QI      KK A LT  E+  L D+TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELL 114
           L+ K  + N+  +K K +E  I  L   K YLE+ + E E+N+RE+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Cp4.1LG11g06640 vs. Swiss-Prot
Match: PFD1_MOUSE (Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.3e-13
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRTFV 66
           +  F E+Q ++I+   K+K    QI      KK A LT  E+  L D+TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELL 114
           L+ K V+ N+  +K K ++  I  L   K YLE+ + E E+N+RE+L
Sbjct: 70  LQSKEVIHNQLLEKQKIAKEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Cp4.1LG11g06640 vs. Swiss-Prot
Match: PFD1_HUMAN (Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-12
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRTFV 66
           +  F E+Q ++I+   K+K    QI      KK A LT  E+  L D+TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELL 114
           L+ K  + ++  +K K +E  I  L   K YLE+ + E E+N+RE+L
Sbjct: 70  LQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of Cp4.1LG11g06640 vs. Swiss-Prot
Match: PFD1_DICDI (Probable prefoldin subunit 1 OS=Dictyostelium discoideum GN=pfdn1 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-10
Identity = 29/110 (26.36%), Postives = 67/110 (60.91%), Query Frame = 1


Query: 6   NRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRTF 65
           ++  F E + ++  ++  L  ++ +I+  E ++K+  +T+ EL+ LS +T  YK++G+ F
Sbjct: 5   DKQAFFETREKLYTLSRSLNIIKQRIQIAENDRKKCLITINELESLSSETKTYKAVGKMF 64

Query: 66  VLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQ 116
           V+ P + L  E +Q+++  E  +  L +  +Y++ Q+ + E +L EL+++
Sbjct: 65  VISPMTSLKTELKQQVQKDEEDVKGLINQSKYIDAQITDTERSLNELVRK 114

[Close]

BLAST of Cp4.1LG11g06640 vs. TrEMBL
Match: A0A0A0LJF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070850 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.9e-54
Identity = 116/129 (89.92%), Postives = 121/129 (93.80%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ NRATFLEIQGRMIEITGKLKQ+QTQIRNKEGEKKRAFLTLEELKQL++DTN YKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLE KSVLMNEQEQK KDSE  I SL SSKEYLEKQ+AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 130
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Cp4.1LG11g06640 vs. TrEMBL
Match: A0A061FRM5_THECC (Prefoldin 1 OS=Theobroma cacao GN=TCM_044384 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.3e-52
Identity = 109/128 (85.16%), Postives = 119/128 (92.97%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ N+  FLEIQGRMIE+TGKLKQVQ Q+RNKEGEKKRA+LTLEEL+QLSDDTN YKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRNKEGEKKRAYLTLEELRQLSDDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLEPK VLMNEQEQKLKDSE+ I SL +SKEYLEKQ+AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKPVLMNEQEQKLKDSESAIASLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 129
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

[Close]

BLAST of Cp4.1LG11g06640 vs. TrEMBL
Match: A0A0D2UW73_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G302200 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-51
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ N+  FLEIQGRMIE+TGKLKQVQ Q+R KEGEKKRAFLTLEEL QL DDTN YKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRTKEGEKKRAFLTLEELNQLPDDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLEPKSVL+NEQEQKLKDSE+ I SL SSKEY+EKQLAEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKSVLVNEQEQKLKDSESAIGSLQSSKEYMEKQLAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 129
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

[Close]

BLAST of Cp4.1LG11g06640 vs. TrEMBL
Match: M1B245_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013569 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-51
Identity = 109/129 (84.50%), Postives = 118/129 (91.47%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ANR  F+EIQGRMIE TGKLKQVQTQIRNKE EKKRA+LTLEELKQLSDDTN YK+
Sbjct: 1   MADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKA 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLEPK+VLMNEQEQKLKD E  I SL +SKEYLEK +AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSVA 130
           RQIM+MSVA
Sbjct: 121 RQIMTMSVA 129

[Close]

BLAST of Cp4.1LG11g06640 vs. TrEMBL
Match: M5XRT4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013327mg PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-50
Identity = 108/128 (84.38%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ANRA F EIQGRMIE+T KLKQVQTQ+RNKEGEKKRAFLTLEEL+ LSDD N YKS
Sbjct: 1   MADEANRAAFFEIQGRMIELTAKLKQVQTQMRNKEGEKKRAFLTLEELRPLSDDANTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLEPKSVL+NEQEQKLKDSE+ I SL  SKEY+EKQ+AEVENNLRELL QDPG+A
Sbjct: 61  IGRTFVLEPKSVLVNEQEQKLKDSESAIASLQISKEYIEKQVAEVENNLRELLNQDPGLA 120

Query: 121 RQIMSMSV 129
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

[Close]

BLAST of Cp4.1LG11g06640 vs. TAIR10
Match: AT2G07340.1 (AT2G07340.1 PREFOLDIN 1)

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-49
Identity = 99/128 (77.34%), Postives = 115/128 (89.84%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+A RA F+EIQ  MIE+TGKLKQVQ Q+RNKEG++KRAFLTLEEL+ L ++TN YKS
Sbjct: 1   MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLEPK+VL  EQEQKLKDSEA + SL +SKEYLEKQ+AEVENNLRELLQQ+PGIA
Sbjct: 61  IGRTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIA 120

Query: 121 RQIMSMSV 129
           +QIMSMS+
Sbjct: 121 QQIMSMSM 128

[Close]

BLAST of Cp4.1LG11g06640 vs. NCBI nr
Match: gi|449470285|ref|XP_004152848.1| (PREDICTED: prefoldin subunit 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 5.6e-54
Identity = 116/129 (89.92%), Postives = 121/129 (93.80%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ NRATFLEIQGRMIEITGKLKQ+QTQIRNKEGEKKRAFLTLEELKQL++DTN YKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLE KSVLMNEQEQK KDSE  I SL SSKEYLEKQ+AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 130
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of Cp4.1LG11g06640 vs. NCBI nr
Match: gi|590567402|ref|XP_007010507.1| (Prefoldin 1 [Theobroma cacao])

HSP 1 Score: 211.5 bits (537), Expect = 9.0e-52
Identity = 109/128 (85.16%), Postives = 119/128 (92.97%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ N+  FLEIQGRMIE+TGKLKQVQ Q+RNKEGEKKRA+LTLEEL+QLSDDTN YKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRNKEGEKKRAYLTLEELRQLSDDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLEPK VLMNEQEQKLKDSE+ I SL +SKEYLEKQ+AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKPVLMNEQEQKLKDSESAIASLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 129
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

[Close]

BLAST of Cp4.1LG11g06640 vs. NCBI nr
Match: gi|823229372|ref|XP_012447429.1| (PREDICTED: prefoldin subunit 1 [Gossypium raimondii])

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-51
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ N+  FLEIQGRMIE+TGKLKQVQ Q+R KEGEKKRAFLTLEEL QL DDTN YKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRTKEGEKKRAFLTLEELNQLPDDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLEPKSVL+NEQEQKLKDSE+ I SL SSKEY+EKQLAEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKSVLVNEQEQKLKDSESAIGSLQSSKEYMEKQLAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 129
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

[Close]

BLAST of Cp4.1LG11g06640 vs. NCBI nr
Match: gi|460396218|ref|XP_004243675.1| (PREDICTED: prefoldin subunit 1 isoform X1 [Solanum lycopersicum])

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-51
Identity = 109/129 (84.50%), Postives = 118/129 (91.47%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ANR  F+EIQGRMIE TGKLKQVQTQIRNKE EKKRA+LTLEELKQLSDDTN YK+
Sbjct: 1   MADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKA 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLEPK+VLMNEQEQKLKD E  I SL +SKEYLEK +AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSVA 130
           RQIM+MSVA
Sbjct: 121 RQIMTMSVA 129

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BLAST of Cp4.1LG11g06640 vs. NCBI nr
Match: gi|659069519|ref|XP_008450462.1| (PREDICTED: probable prefoldin subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 4.5e-51
Identity = 111/128 (86.72%), Postives = 118/128 (92.19%), Query Frame = 1


Query: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MA++ANR TFLEIQGRMIEITGKLKQ+QTQIR KEGEKKRAFLTLEELKQLS+DTN YKS
Sbjct: 1   MANEANRDTFLEIQGRMIEITGKLKQLQTQIRGKEGEKKRAFLTLEELKQLSEDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120
           IGRTFVLE KSVLMNEQEQK KDSE  I SL SSKEYLE+Q+AEVENNLRELLQ DPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLERQMAEVENNLRELLQLDPGIA 120

Query: 121 RQIMSMSV 129
           RQIMSMS+
Sbjct: 121 RQIMSMSI 128

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g06640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PFD1_BOVIN	4.8e-13	37.38	Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1	[more]
PFD1_PONAB	6.3e-13	37.38	Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1	[more]
PFD1_MOUSE	6.3e-13	37.38	Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=1 SV=1	[more]
PFD1_HUMAN	2.4e-12	36.45	Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2	[more]
PFD1_DICDI	3.8e-10	26.36	Probable prefoldin subunit 1 OS=Dictyostelium discoideum GN=pfdn1 PE=3 SV=1	[more]

BLAST of Cp4.1LG11g06640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJF7_CUCSA	3.9e-54	89.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070850 PE=4 SV=1	[more]
A0A061FRM5_THECC	6.3e-52	85.16	Prefoldin 1 OS=Theobroma cacao GN=TCM_044384 PE=4 SV=1	[more]
A0A0D2UW73_GOSRA	2.4e-51	85.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G302200 PE=4 SV=1	[more]
M1B245_SOLTU	2.4e-51	84.50	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013569 PE=4 SV=1	[more]
M5XRT4_PRUPE	1.5e-50	84.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013327mg PE=4 SV=1	[more]

BLAST of Cp4.1LG11g06640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07340.1	2.0e-49	77.34	PREFOLDIN 1	[more]

BLAST of Cp4.1LG11g06640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470285\|ref\|XP_004152848.1\|	5.6e-54	89.92	PREDICTED: prefoldin subunit 1 isoform X1 [Cucumis sativus]	[more]
gi\|590567402\|ref\|XP_007010507.1\|	9.0e-52	85.16	Prefoldin 1 [Theobroma cacao]	[more]
gi\|823229372\|ref\|XP_012447429.1\|	3.4e-51	85.16	PREDICTED: prefoldin subunit 1 [Gossypium raimondii]	[more]
gi\|460396218\|ref\|XP_004243675.1\|	3.4e-51	84.50	PREDICTED: prefoldin subunit 1 isoform X1 [Solanum lycopersicum]	[more]
gi\|659069519\|ref\|XP_008450462.1\|	4.5e-51	86.72	PREDICTED: probable prefoldin subunit 1 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016272	prefoldin complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **INTERPRO**
Term	Definition
IPR009053	Prefoldin
IPR002777	PFD_beta-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g06640.1	Cp4.1LG11g06640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 13..115 score: 1.6
IPR009053	Prefoldin	GENE3D	G3DSA:1.10.287.370		coord: 12..116 score: 1.4
IPR009053	Prefoldin	unknown	SSF46579	Prefoldin	coord: 10..114 score: 1.23
None	No IPR available	unknown	Coil	Coil	coord: 74..115 score: -coord: 31..51 scor
None	No IPR available	PANTHER	PTHR20903	PREFOLDIN SUBUNIT 1-RELATED	coord: 1..128 score: 1.9
None	No IPR available	PANTHER	PTHR20903:SF0	PREFOLDIN SUBUNIT 1	coord: 1..128 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g06640	Cucsa.178890	Cucumber (Gy14) v1	cgycpeB0491
Cp4.1LG11g06640	CmaCh12G009360	Cucurbita maxima (Rimu)	cmacpeB175
Cp4.1LG11g06640	CmoCh12G009370	Cucurbita moschata (Rifu)	cmocpeB149
Cp4.1LG11g06640	CmoCh05G007760	Cucurbita moschata (Rifu)	cmocpeB720
Cp4.1LG11g06640	Cla005768	Watermelon (97103) v1	cpewmB122
Cp4.1LG11g06640	Csa2G070850	Cucumber (Chinese Long) v2	cpecuB098
Cp4.1LG11g06640	MELO3C003910	Melon (DHL92) v3.5.1	cpemeB102
Cp4.1LG11g06640	ClCG11G011210	Watermelon (Charleston Gray)	cpewcgB098
Cp4.1LG11g06640	CSPI02G06820	Wild cucumber (PI 183967)	cpecpiB094
Cp4.1LG11g06640	Lsi11G008300	Bottle gourd (USVL1VR-Ls)	cpelsiB070
Cp4.1LG11g06640	MELO3C003910.2	Melon (DHL92) v3.6.1	cpemedB127
Cp4.1LG11g06640	CsaV3_2G009230	Cucumber (Chinese Long) v3	cpecucB0108
Cp4.1LG11g06640	Bhi06G001029	Wax gourd	cpewgoB0118
Cp4.1LG11g06640	CsGy2G006990	Cucumber (Gy14) v2	cgybcpeB163
Cp4.1LG11g06640	Carg19821	Silver-seed gourd	carcpeB0237
Cp4.1LG11g06640	Carg22670	Silver-seed gourd	carcpeB0005

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG11g06640	Cp4.1LG07g07680	Cucurbita pepo (Zucchini)	cpecpeB142

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g06640	Wax gourd	cpewgoB0127
Cp4.1LG11g06640	Cucurbita maxima (Rimu)	cmacpeB766