CmaCh12G009360 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G009360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Prefoldin subunit 1
Location	Cma_Chr12 : 7281190 .. 7283436 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTTACATCGGACCCTAAAAATTTTCAAACATTCATATTCGTAATTCGCAGAGTTGTAATCAAAGATCGTCTACTTGAATTCTGAATCTTCGCAATGGCGGACGAGGCGAACAGAGCTGTGAGTACTTTTTTCACTCTTCTCATCTTGTTTTTCCACTCGCCTCTGCCATTTTCCCGATGCATGAACTCTTGATTTTGTTTCTGGAATCAGACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTAATCTCCTTTCATTTTTCACTTAATTTTTTTGTACTTACTGTCTAGATTGTTCTTATTCATATTCGTGTTTAATTACTAAAGTAAACGAATGTTTCCTAGGTTAACTGATGAATCCAATCAATGTTCGTATTTCCAGTTCTGTCATTCTTCGATGTTTCGCTTTATTTGAATGGAGAGTTCTTGATTTATGAGTTCAAGCTGGTGTTCTTTCTCCTTGCTTTGCAGGTGCAAAGTCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACCTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGGTACTTGACAAATCTGTATTTTGTAACTGGAAATTTGTTCATTCTTTGCCTCAATCGTGATTACTTATCATTGATTTCTTTCCATCATTCTTTGTGGTGCAGGGAGAGCGTGAGTTATGCTACAATTGATCGATCCAGTTAAAGTTAGATTTTCATTTATCTCATAGTATATATATGAAATTCTCTTACTTTGTGTTGTCTCATCCTGACCAGGTTTGTTTTAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGCTCAAGGATAGTGAAGCTGCAATTGTATCACTGCAGGTTCATATTAGTATTACTTTCATCTGTAGAGACGAAATCTTCCTTTGAGCATTTTTCATTCACTAACTAACATTTTCTTGCTCTTCTATGTTCTATGTGTAATGACCCTAGATTTTTACTAACCTAAAGTCGCTACTATCATCATACTATACTCTCTTATACGGAAAATAAACCTTGAAAATATTGTCGTAAAACATTGCCATGGACTTGTAGGTTCGAAATCATCTTTAAAAGAACCTAAGGAAATACTAAATAAAACAAGTAAAACATTAAAAGTAACAACACCCTATACTAACCTAAAGTCTAAGAAATGAAATACCACTATCCTATGCACGTGTCATAGTCTCTACTAGCGATGCCCTCGTCAACTGTACAAGGGTACCTTGTCTTTACCTGAAATAGAAGTAGCACACGGCTTGAGTATTTTAAGAAATATTCAGTAAGTGGGGGTCAGGGAATGCAAACACATGCAATTCATGATTAGAGACCCATCGTTAAAATCATCATAGGGGTCGTTACACTATGTTTTCTCGAAATTTTAATTCTTGCATTAACACAGAATCCACACACACACAAAAGGGTATTTCTTATGAGGATCTGGGCATATTCAAACACTTCTTTGAACGAATTACGTTCTGTGAAGAGTTTGATGTCATTAATGCTATCCTCTTTCTTGCCAACTAGAACTTAGCTCAAGCATGCACAAAAAATTCTTGGCTTTCAATTCTTTCTTGCCAATTTGAACTTAGCTCAATCTGGGAAGGCATATACACGCACAATATTCTTGACATCTAATTGAAAGCGAACTTACTTTTCTGTTTTGGCATCTAATTGAAAGCGAACGAATCACGTTATTTGACTGGTAGAGGTGTCGTTACCAAGAGATTTGGAGAGTAGGCTGAACTTTTGTGATTTACACTATTTGGCAATGTTCTTATTTAATCTTTGATAAATGGCATTTGGGTATTTTTTTTTGATTATGGGTTCATGGAAGATGGTTTTTTTGCACATTTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAAGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGACTGTAGCATAAGACATGCTCTCCTCTCTCCATTTGAATCTGAAATTAGCTGATCTTGTTCACAAGAATTTTAGTTTGTTGGTTGCTGTGTTATTCTGATGCCTAAACTCTGTTTCATATGCATTACATACTCCTTAAGTTCCCAGTTCTGTCAAGGGATACGTTCGAAATTTCTTAATTAGATAATGGATAGAATGCCCAAAAATGATTCTCCATTCTCTCTCTCTTTT

mRNA sequence

CAGTTACATCGGACCCTAAAAATTTTCAAACATTCATATTCGTAATTCGCAGAGTTGTAATCAAAGATCGTCTACTTGAATTCTGAATCTTCGCAATGGCGGACGAGGCGAACAGAGCTACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTGCAAAGTCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACCTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGGGAGAGCGTTTGTTTTAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGCTCAAGGATAGTGAAGCTGCAATTGTATCACTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAAGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGACTGTAGCATAAGACATGCTCTCCTCTCTCCATTTGAATCTGAAATTAGCTGATCTTGTTCACAAGAATTTTAGTTTGTTGGTTGCTGTGTTATTCTGATGCCTAAACTCTGTTTCATATGCATTACATACTCCTTAAGTTCCCAGTTCTGTCAAGGGATACGTTCGAAATTTCTTAATTAGATAATGGATAGAATGCCCAAAAATGATTCTCCATTCTCTCTCTCTTTT

Coding sequence (CDS)

ATGGCGGACGAGGCGAACAGAGCTACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTGCAAAGTCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACCTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGGGAGAGCGTTTGTTTTAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGCTCAAGGATAGTGAAGCTGCAATTGTATCACTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAAGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGACTGTAGCATAA

Protein sequence

MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIARQIMSMTVA

Homology

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BLAST of CmaCh12G009360 vs. Swiss-Prot
Match: PFD1_HUMAN (Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-11
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRAFV 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELL 114
           L+ K  + ++  +K K +E  I  L+  K YLE+   E E+N++E+L
Sbjct: 70  LQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of CmaCh12G009360 vs. Swiss-Prot
Match: PFD1_BOVIN (Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRAFV 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELL 114
           L+ K  +  +  +K K +E  I  L+  K YLE+   E E+N++E+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of CmaCh12G009360 vs. Swiss-Prot
Match: PFD1_MOUSE (Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRAFV 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELL 114
           L+ K V+  +  +K K ++  I  L+  K YLE+   E E+N++E+L
Sbjct: 70  LQSKEVIHNQLLEKQKIAKEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of CmaCh12G009360 vs. Swiss-Prot
Match: PFD1_PONAB (Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 1


Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRAFV 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELL 114
           L+ K  +  +  +K K +E  I  L+  K YLE+   E E+N++E+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

[Close]

BLAST of CmaCh12G009360 vs. Swiss-Prot
Match: PFD1_DICDI (Probable prefoldin subunit 1 OS=Dictyostelium discoideum GN=pfdn1 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.4e-09
Identity = 28/110 (25.45%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 6   NRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIGRAF 65
           ++  F E + ++  ++  L  ++ +++  E ++K+  +T+ EL+ LS +T  YK++G+ F
Sbjct: 5   DKQAFFETREKLYTLSRSLNIIKQRIQIAENDRKKCLITINELESLSSETKTYKAVGKMF 64

Query: 66  VLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQ 116
           V+ P + L  E +Q+++  E  +  L +  +Y++ Q  + E +L EL+++
Sbjct: 65  VISPMTSLKTELKQQVQKDEEDVKGLINQSKYIDAQITDTERSLNELVRK 114

[Close]

BLAST of CmaCh12G009360 vs. TrEMBL
Match: A0A0A0LJF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070850 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.7e-52
Identity = 113/129 (87.60%), Postives = 120/129 (93.02%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE NRATFLEIQGRMIEITGKLKQ+Q+Q+RNKEGEKKRAFLTLEELKQL++DTN YKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120
           IGR FVLE KSVLM EQEQK KDSE AI SLQSSKEYLEKQ AEVENNL+ELLQQDPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMTVA 130
           RQIMSM+VA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of CmaCh12G009360 vs. TrEMBL
Match: A0A061FRM5_THECC (Prefoldin 1 OS=Theobroma cacao GN=TCM_044384 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-50
Identity = 108/128 (84.38%), Postives = 119/128 (92.97%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE N+  FLEIQGRMIE+TGKLKQVQ+Q+RNKEGEKKRA+LTLEEL+QLSDDTN YKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRNKEGEKKRAYLTLEELRQLSDDTNTYKS 60

Query: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120
           IGR FVLEPK VLM EQEQKLKDSE+AI SLQ+SKEYLEKQ AEVENNL+ELLQQDPG+A
Sbjct: 61  IGRTFVLEPKPVLMNEQEQKLKDSESAIASLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMTV 129
           RQIMSM+V
Sbjct: 121 RQIMSMSV 128

[Close]

BLAST of CmaCh12G009360 vs. TrEMBL
Match: F6H9Q5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00480 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.5e-50
Identity = 110/129 (85.27%), Postives = 118/129 (91.47%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANR  F+EIQG MIE TGKLKQVQ+Q+RNKEGEKKRAFLTLEEL+QLSDDTN YKS
Sbjct: 1   MADEANRTAFMEIQGHMIETTGKLKQVQNQMRNKEGEKKRAFLTLEELRQLSDDTNTYKS 60

Query: 61  IGRA-FVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGI 120
           IGR  FVLEPKS LM+EQEQKLKDSEAAI  LQ+SKEYLEKQ AEVENNL+ELLQQDPG+
Sbjct: 61  IGRTRFVLEPKSALMSEQEQKLKDSEAAIAGLQTSKEYLEKQMAEVENNLRELLQQDPGL 120

Query: 121 ARQIMSMTV 129
           ARQIMSMTV
Sbjct: 121 ARQIMSMTV 129

[Close]

BLAST of CmaCh12G009360 vs. TrEMBL
Match: M1B245_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013569 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.2e-49
Identity = 106/129 (82.17%), Postives = 117/129 (90.70%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANR  F+EIQGRMIE TGKLKQVQ+Q+RNKE EKKRA+LTLEELKQLSDDTN YK+
Sbjct: 1   MADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKA 60

Query: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120
           IGR FVLEPK+VLM EQEQKLKD E AI SLQ+SKEYLEK  AEVENNL+ELLQQDPG+A
Sbjct: 61  IGRTFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMTVA 130
           RQIM+M+VA
Sbjct: 121 RQIMTMSVA 129

[Close]

BLAST of CmaCh12G009360 vs. TrEMBL
Match: A0A0D2UW73_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G302200 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-49
Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE N+  FLEIQGRMIE+TGKLKQVQ+Q+R KEGEKKRAFLTLEEL QL DDTN YKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRTKEGEKKRAFLTLEELNQLPDDTNTYKS 60

Query: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120
           IGR FVLEPKSVL+ EQEQKLKDSE+AI SLQSSKEY+EKQ AEVENNL+ELLQQDPG+A
Sbjct: 61  IGRTFVLEPKSVLVNEQEQKLKDSESAIGSLQSSKEYMEKQLAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMTV 129
           RQIMSM+V
Sbjct: 121 RQIMSMSV 128

[Close]

BLAST of CmaCh12G009360 vs. TAIR10
Match: AT2G07340.1 (AT2G07340.1 PREFOLDIN 1)

HSP 1 Score: 191.0 bits (484), Expect = 4.4e-49
Identity = 99/128 (77.34%), Postives = 116/128 (90.62%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEA RA F+EIQ  MIE+TGKLKQVQ+Q+RNKEG++KRAFLTLEEL+ L ++TN YKS
Sbjct: 1   MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKS 60

Query: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120
           IGR FVLEPK+VL  EQEQKLKDSEAA+ SLQ+SKEYLEKQ AEVENNL+ELLQQ+PGIA
Sbjct: 61  IGRTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIA 120

Query: 121 RQIMSMTV 129
           +QIMSM++
Sbjct: 121 QQIMSMSM 128

[Close]

BLAST of CmaCh12G009360 vs. NCBI nr
Match: gi|449470285|ref|XP_004152848.1| (PREDICTED: prefoldin subunit 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 5.3e-52
Identity = 113/129 (87.60%), Postives = 120/129 (93.02%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE NRATFLEIQGRMIEITGKLKQ+Q+Q+RNKEGEKKRAFLTLEELKQL++DTN YKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120
           IGR FVLE KSVLM EQEQK KDSE AI SLQSSKEYLEKQ AEVENNL+ELLQQDPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMTVA 130
           RQIMSM+VA
Sbjct: 121 RQIMSMSVA 129

[Close]

BLAST of CmaCh12G009360 vs. NCBI nr
Match: gi|359484922|ref|XP_002264879.2| (PREDICTED: prefoldin subunit 1 isoform X1 [Vitis vinifera])

HSP 1 Score: 209.9 bits (533), Expect = 2.6e-51
Identity = 110/128 (85.94%), Postives = 118/128 (92.19%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANR  F+EIQG MIE TGKLKQVQ+Q+RNKEGEKKRAFLTLEEL+QLSDDTN YKS
Sbjct: 1   MADEANRTAFMEIQGHMIETTGKLKQVQNQMRNKEGEKKRAFLTLEELRQLSDDTNTYKS 60

Query: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120
           IGR FVLEPKS LM+EQEQKLKDSEAAI  LQ+SKEYLEKQ AEVENNL+ELLQQDPG+A
Sbjct: 61  IGRTFVLEPKSALMSEQEQKLKDSEAAIAGLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMTV 129
           RQIMSMTV
Sbjct: 121 RQIMSMTV 128

[Close]

BLAST of CmaCh12G009360 vs. NCBI nr
Match: gi|720093672|ref|XP_010246123.1| (PREDICTED: prefoldin subunit 1 [Nelumbo nucifera])

HSP 1 Score: 209.1 bits (531), Expect = 4.5e-51
Identity = 110/128 (85.94%), Postives = 119/128 (92.97%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE NR  FLEIQGRMIEITGKLKQVQ+Q+RNKEGEKKRAFLTLEEL+QL+DDTN YKS
Sbjct: 1   MADETNRTAFLEIQGRMIEITGKLKQVQNQMRNKEGEKKRAFLTLEELRQLTDDTNTYKS 60

Query: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120
           IGR FVLEPKSVL+ EQEQKLKDSE AI SLQ+SKEYLEKQ AEVE+NL+ELLQQDPG+A
Sbjct: 61  IGRTFVLEPKSVLVKEQEQKLKDSETAIASLQTSKEYLEKQMAEVESNLRELLQQDPGLA 120

Query: 121 RQIMSMTV 129
           RQIMSMTV
Sbjct: 121 RQIMSMTV 128

[Close]

BLAST of CmaCh12G009360 vs. NCBI nr
Match: gi|747063283|ref|XP_011078183.1| (PREDICTED: prefoldin subunit 1 [Sesamum indicum])

HSP 1 Score: 208.0 bits (528), Expect = 9.9e-51
Identity = 108/128 (84.38%), Postives = 121/128 (94.53%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANR+ FLEIQGRMIE TGKLKQVQ+Q+RNKE EKKRA+LTLEELKQL+DDTN YKS
Sbjct: 1   MADEANRSAFLEIQGRMIETTGKLKQVQNQLRNKEAEKKRAYLTLEELKQLADDTNTYKS 60

Query: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120
           IGR F+LEPKSVLM EQ+QKLKDSEAAIV+LQ+SKEYLEKQ AEVENNL+ELLQQDPG+A
Sbjct: 61  IGRTFILEPKSVLMEEQDQKLKDSEAAIVALQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMTV 129
           RQIM+M+V
Sbjct: 121 RQIMAMSV 128

[Close]

BLAST of CmaCh12G009360 vs. NCBI nr
Match: gi|590567402|ref|XP_007010507.1| (Prefoldin 1 [Theobroma cacao])

HSP 1 Score: 207.2 bits (526), Expect = 1.7e-50
Identity = 108/128 (84.38%), Postives = 119/128 (92.97%), Query Frame = 1


Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE N+  FLEIQGRMIE+TGKLKQVQ+Q+RNKEGEKKRA+LTLEEL+QLSDDTN YKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRNKEGEKKRAYLTLEELRQLSDDTNTYKS 60

Query: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120
           IGR FVLEPK VLM EQEQKLKDSE+AI SLQ+SKEYLEKQ AEVENNL+ELLQQDPG+A
Sbjct: 61  IGRTFVLEPKPVLMNEQEQKLKDSESAIASLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMTV 129
           RQIMSM+V
Sbjct: 121 RQIMSMSV 128

The following BLAST results are available for this feature:

BLAST of CmaCh12G009360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PFD1_HUMAN	5.9e-11	34.58	Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2	[more]
PFD1_BOVIN	1.3e-10	34.58	Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1	[more]
PFD1_MOUSE	1.3e-10	34.58	Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=1 SV=1	[more]
PFD1_PONAB	1.3e-10	34.58	Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1	[more]
PFD1_DICDI	9.4e-09	25.45	Probable prefoldin subunit 1 OS=Dictyostelium discoideum GN=pfdn1 PE=3 SV=1	[more]

BLAST of CmaCh12G009360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJF7_CUCSA	3.7e-52	87.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070850 PE=4 SV=1	[more]
A0A061FRM5_THECC	1.2e-50	84.38	Prefoldin 1 OS=Theobroma cacao GN=TCM_044384 PE=4 SV=1	[more]
F6H9Q5_VITVI	4.5e-50	85.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00480 PE=4 SV=...	[more]
M1B245_SOLTU	2.2e-49	82.17	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013569 PE=4 SV=1	[more]
A0A0D2UW73_GOSRA	2.9e-49	83.59	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G302200 PE=4 SV=1	[more]

BLAST of CmaCh12G009360 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07340.1	4.4e-49	77.34	PREFOLDIN 1	[more]

BLAST of CmaCh12G009360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470285\|ref\|XP_004152848.1\|	5.3e-52	87.60	PREDICTED: prefoldin subunit 1 isoform X1 [Cucumis sativus]	[more]
gi\|359484922\|ref\|XP_002264879.2\|	2.6e-51	85.94	PREDICTED: prefoldin subunit 1 isoform X1 [Vitis vinifera]	[more]
gi\|720093672\|ref\|XP_010246123.1\|	4.5e-51	85.94	PREDICTED: prefoldin subunit 1 [Nelumbo nucifera]	[more]
gi\|747063283\|ref\|XP_011078183.1\|	9.9e-51	84.38	PREDICTED: prefoldin subunit 1 [Sesamum indicum]	[more]
gi\|590567402\|ref\|XP_007010507.1\|	1.7e-50	84.38	Prefoldin 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002777	PFD_beta-like
IPR009053	Prefoldin

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016272	prefoldin complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G009360.1	CmaCh12G009360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 13..115 score: 1.3
IPR009053	Prefoldin	GENE3D	G3DSA:1.10.287.370		coord: 11..116 score: 8.5
IPR009053	Prefoldin	unknown	SSF46579	Prefoldin	coord: 10..114 score: 1.12
None	No IPR available	unknown	Coil	Coil	coord: 74..115 score: -coord: 31..51 scor
None	No IPR available	PANTHER	PTHR20903	PREFOLDIN SUBUNIT 1-RELATED	coord: 1..128 score: 9.5
None	No IPR available	PANTHER	PTHR20903:SF0	PREFOLDIN SUBUNIT 1	coord: 1..128 score: 9.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G009360	Cucsa.178890	Cucumber (Gy14) v1	cgycmaB0509
CmaCh12G009360	Cla005768	Watermelon (97103) v1	cmawmB176
CmaCh12G009360	Csa2G070850	Cucumber (Chinese Long) v2	cmacuB165
CmaCh12G009360	MELO3C003910	Melon (DHL92) v3.5.1	cmameB175
CmaCh12G009360	ClCG11G011210	Watermelon (Charleston Gray)	cmawcgB148
CmaCh12G009360	CSPI02G06820	Wild cucumber (PI 183967)	cmacpiB166
CmaCh12G009360	CmoCh05G007760	Cucurbita moschata (Rifu)	cmacmoB191
CmaCh12G009360	CmoCh12G009370	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G009360	Lsi11G008300	Bottle gourd (USVL1VR-Ls)	cmalsiB154
CmaCh12G009360	Cp4.1LG11g06640	Cucurbita pepo (Zucchini)	cmacpeB175
CmaCh12G009360	Cp4.1LG07g07680	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G009360	MELO3C003910.2	Melon (DHL92) v3.6.1	cmamedB190
CmaCh12G009360	CsaV3_2G009230	Cucumber (Chinese Long) v3	cmacucB0193
CmaCh12G009360	Bhi06G001029	Wax gourd	cmawgoB0179
CmaCh12G009360	CsGy2G006990	Cucumber (Gy14) v2	cgybcmaB169
CmaCh12G009360	Carg19821	Silver-seed gourd	carcmaB0220
CmaCh12G009360	Carg22670	Silver-seed gourd	carcmaB0008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G009360	Cucurbita maxima (Rimu)	cmacmaB191
CmaCh12G009360	Watermelon (97103) v2	cmawmbB172