Carg22670-RA (mRNA) Silver-seed gourd

NameCarg22670-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprefoldin subunit 1
LocationCucurbita_argyrosperma_scaffold_148 : 415961 .. 417949 (-)
Sequence length372
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACGAGGCGAACAGAGCTGTGAGTATTTCTACTCTTCTCATCTTGTTTTTCCACTCGCCACTGCCATTTTCCGATGCATGAACTCTTGATTTTGTTTCTGGAATCAGACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTAATCTCCTTTCATTTTTCACATAAATCTTTTGTAATTACTGTCTAGATTGTTCTTATTCATATTCGTGTTTAATTTCTAAAGTAAACGAATGTTTCCTAGGTTAACTGATGAATCCAATCAATGTTCGTATTTCCAGTTTTGTCATTCTTCGATGTTTCGCTTTATTTGAATGGAGAGTTCTTGATTTATGAGTTCAAGCTGGTGTTCTTTCTCCTTGCTTTGCAGGTGCAAAGCCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACTTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGGTACTCGACAAATCTGTATTTTGTAACTGGAAATTTGTTCATTCTTTGCCTCAATCGTGATTGCTTATCATTGATTTCTTTCCATCATTCTTTGTGGTGCAGGGAGAGCGTGAGTTATGCTACAATTGATCGATCCAGTTGAAGTTAGATTTTCTTTTATCTCATAGTATATATATGAAATTCTCTTACTTTGTGTTGTCTCATCCTGACCAGGTTTGTTTTAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGTTCAAGGATAGTGAAGCTGCAATTGTCTCACTGCAGGTTCATATTAGTATTACTTTCATCTGTAGAGACAAGAGATCTTCCTTTGAGTTCCCAATTTTGTATGCCTATCATTCACGTTGTCTTTTCTTGAAGATTTTGTTAGAGCATTTTTCATTCACTAACTAACATTTTCTTGCCCTTCTATGTTCGATGTGTAACGACCCTAGATTTTTACTAACCTAAAGTCTCTACCGTCATTATACTATACTCTCTTATACTGAAAATAAACCTTGAAAATATTGTCGTAAAACATTGCCATGGACTTGTATGTTTGAAATCATCTTTAAAAGAACCCAAGGAAATACTAAATAAATCAAGTAAAACATTAAAAGTAAAAACACCCTATACTAACCTAAAGTCTAAGAGATGAAATACCACTATCCTATGCACGTGTCATGATCTCTACTTGCAATGTCCTCGTCAACTGCACAGGGGTACTTTGTCTTTACCTGAAATAGAAATAGCACACGGCTTGAGTATTTTAAGAAATACTCCGTAAGTGGGGGTCAGGGAATGCAAACACATACAATTCATGATTAGAGGCCTATCGTTAAAATCATCATAGGGGTCGTTACACTATGTTTTCTTGAAATTTTAATTCTTGCATTAACACAGAATCCGCACACACACAAAAGGGTATTTCTTATGAGGATCTGGGCATATCCAAACACTTCTTTGAACGAATTACGTTCAGTGAAGAGTTCGATGCCATCAATGCTACCTTCTTTCTTGCCAACTAGAACTTAGCTCAAGCATACACACAATATTCTTGGCTTTCAATTTTTTCTTGTCAATTTGAACATAGCTCAATCTGTGAAGGCATATAGATACAATATCCTCGACATCTAATTGAAAGCGAACTTGCTTTTCTGTTTTGGCATCTAATTGAAAGCGAACTAATCACGTTATTTGACTGGTAGAGGTGTCGTTACCAAGAGATTTGGAGAGTAGGCTGAACTTTTGTGATTGACACTATTTGGCAATGTTCTTATTTAATCTTTGATAATTGGCATTTGGGTATTTTTTTTTATTATGAACCCTTCATTGAAGATGGCTTTCTTGCACGTTTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGTCTGTAGCATAA

mRNA sequence

ATGGCGGACGAGGCGAACAGAGCTACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTGCAAAGCCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACTTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGTTCAAGGATAGTGAAGCTGCAATTGTCTCACTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGTCTGTAGCATAA

Coding sequence (CDS)

ATGGCGGACGAGGCGAACAGAGCTACATTTTTGGAAATTCAAGGTCGCATGATTGAGATTACTGGAAAGCTGAAGCAGGTGCAAAGCCAGGTACGAAACAAGGAGGGAGAAAAGAAGCGTGCCTTTTTAACTTTGGAGGAACTTAAACAGTTGTCCGATGACACCAATGCGTACAAATCGATAGAGCCGAAATCGGTTCTAATGGCGGAACAGGAGCAAAAGTTCAAGGATAGTGAAGCTGCAATTGTCTCACTGCAGAGCTCAAAGGAGTATCTAGAGAAGCAAAAGGCGGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAACAAGATCCAGGTATAGCTCGCCAGATTATGTCCATGTCTGTAGCATAA

Protein sequence

MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIEPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIARQIMSMSVA
BLAST of Carg22670-RA vs. NCBI nr
Match: XP_022937756.1 (prefoldin subunit 1-like [Cucurbita moschata])

HSP 1 Score: 216.1 bits (549), Expect = 6.8e-53
Identity = 121/129 (93.80%), Postives = 123/129 (95.35%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNL+EL+QQDPGIA
Sbjct: 61  IGRAFVLEPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLKELVQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

BLAST of Carg22670-RA vs. NCBI nr
Match: XP_023536940.1 (prefoldin subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.1 bits (549), Expect = 6.8e-53
Identity = 122/129 (94.57%), Postives = 122/129 (94.57%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLMAEQEQK KDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA
Sbjct: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

BLAST of Carg22670-RA vs. NCBI nr
Match: XP_022966081.1 (prefoldin subunit 1 [Cucurbita maxima])

HSP 1 Score: 213.8 bits (543), Expect = 3.4e-52
Identity = 120/129 (93.02%), Postives = 122/129 (94.57%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLMAEQEQK KDSEAAIVSLQSSKEYLEKQKAEVENNL+ELLQQDPGIA
Sbjct: 61  IGRAFVLEPKSVLMAEQEQKLKDSEAAIVSLQSSKEYLEKQKAEVENNLKELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSM+VA
Sbjct: 121 RQIMSMTVA 129

BLAST of Carg22670-RA vs. NCBI nr
Match: XP_022929581.1 (prefoldin subunit 1-like [Cucurbita moschata])

HSP 1 Score: 202.6 bits (514), Expect = 7.7e-49
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ANRATFLEIQGRMIEITGKLKQVQ+Q+RNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSEAAI SL SSKEYLEKQ AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLEPKSVLMNEQEQKLKDSEAAIGSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMS+A
Sbjct: 121 RQIMSMSLA 129

BLAST of Carg22670-RA vs. NCBI nr
Match: XP_023546624.1 (prefoldin subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 114/129 (88.37%), Postives = 117/129 (90.70%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MAD+ANRATFLEIQGRMIEITGKLKQVQ+Q+RNKEGEKKRAFLTLEELKQLSDDTNAYKS
Sbjct: 1   MADDANRATFLEIQGRMIEITGKLKQVQTQIRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSEA I SL SSKEYLEKQ AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLEPKSVLMNEQEQKLKDSEATIDSLHSSKEYLEKQLAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

BLAST of Carg22670-RA vs. TAIR10
Match: AT2G07340.1 (PREFOLDIN 1)

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-44
Identity = 95/128 (74.22%), Postives = 110/128 (85.94%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEA RA F+EIQ  MIE+TGKLKQVQ+Q+RNKEG++KRAFLTLEEL+ L ++TN YKS
Sbjct: 1   MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPK+VL  EQEQK KDSEAA+ SLQ+SKEYLEKQ AEVENNLRELLQQ+PGIA
Sbjct: 61  IGRTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIA 120

Query: 121 RQIMSMSV 123
           +QIMSMS+
Sbjct: 121 QQIMSMSM 128

BLAST of Carg22670-RA vs. Swiss-Prot
Match: sp|Q3SZE2|PFD1_BOVIN (Prefoldin subunit 1 OS=Bos taurus OX=9913 GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIEPKSV 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +    +
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LMAEQE------QKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
           L +++       +K K +E  I  L+  K YLE+   E E+N+RE+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEXXKSYLERSVKEAEDNIREML 116

BLAST of Carg22670-RA vs. Swiss-Prot
Match: sp|Q9CWM4|PFD1_MOUSE (Prefoldin subunit 1 OS=Mus musculus OX=10090 GN=Pfdn1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSI----- 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +     
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  -EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
            + K V+  +  +K K ++  I  L+  K YLE+   E E+N+RE+L
Sbjct: 70  LQSKEVIHNQLLEKQKIAKEKIKELEQKKSYLERSVKEAEDNIREML 116

BLAST of Carg22670-RA vs. Swiss-Prot
Match: sp|Q5RAM7|PFD1_PONAB (Prefoldin subunit 1 OS=Pongo abelii OX=9601 GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSIEPKSV 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +    +
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LMAEQE------QKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
           L +++       +K K +E  I  L+  K YLE+   E E+N+RE+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEXXKSYLERSVKEAEDNIREML 116

BLAST of Carg22670-RA vs. Swiss-Prot
Match: sp|O60925|PFD1_HUMAN (Prefoldin subunit 1 OS=Homo sapiens OX=9606 GN=PFDN1 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 33/107 (30.84%), Postives = 55/107 (51.40%), Query Frame = 0

Query: 7   RATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKSI----- 66
           +  F E+Q ++I+   K+K    Q+      KK A LT  E+  L D+TN Y+ +     
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  -EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELL 108
            + K  + ++  +K K +E  I  L+    YLE+   E E+N+RE+L
Sbjct: 70  LQSKEAIHSQLLEKQKIAEEKIKELEXXXSYLERSVKEAEDNIREML 116

BLAST of Carg22670-RA vs. Swiss-Prot
Match: sp|Q54JS0|PFD1_DICDI (Probable prefoldin subunit 1 OS=Dictyostelium discoideum OX=44689 GN=pfdn1 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 26/110 (23.64%), Postives = 60/110 (54.55%), Query Frame = 0

Query: 6   NRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS----- 65
           ++  F E + ++  ++  L  ++ +++  E ++K+  +T+ EL+ LS +T  YK+     
Sbjct: 5   DKQAFFETREKLYTLSRSLNIIKQRIQIAENDRKKCLITINELESLSSETKTYKAVGKMF 64

Query: 66  -IEPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQ 110
            I P + L  E +Q+ +  E  +  L +  +Y++ Q  + E +L EL+++
Sbjct: 65  VISPMTSLKTELKQQVQKDEEDVKGLINQSKYIDAQITDTERSLNELVRK 114

BLAST of Carg22670-RA vs. TrEMBL
Match: tr|A0A0A0LJF7|A0A0A0LJF7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070850 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.7e-48
Identity = 111/129 (86.05%), Postives = 116/129 (89.92%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE NRATFLEIQGRMIEITGKLKQ+Q+Q+RNKEGEKKRAFLTLEELKQL++DTN YKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      E KSVLM EQEQKFKDSE AI SLQSSKEYLEKQ AEVENNLRELLQQDPGIA
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120

Query: 121 RQIMSMSVA 124
           RQIMSMSVA
Sbjct: 121 RQIMSMSVA 129

BLAST of Carg22670-RA vs. TrEMBL
Match: tr|A0A2I4EVP4|A0A2I4EVP4_9ROSI (prefoldin subunit 1 OS=Juglans regia OX=51240 GN=LOC108993147 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.3e-46
Identity = 106/128 (82.81%), Postives = 113/128 (88.28%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRA F+EIQGRMIEITGKLKQVQ Q+RNKEGEKKRAFLTLEEL+QLSDD N YKS
Sbjct: 1   MADEANRAAFIEIQGRMIEITGKLKQVQIQLRNKEGEKKRAFLTLEELRQLSDDANTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSE AI SLQ+SKEYLEKQ+AEVENN RELLQQDPG+A
Sbjct: 61  IGRTFFLEPKSVLMNEQEQKLKDSETAIASLQTSKEYLEKQRAEVENNFRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIMSM+V
Sbjct: 121 RQIMSMTV 128

BLAST of Carg22670-RA vs. TrEMBL
Match: tr|A0A2G9GHY4|A0A2G9GHY4_9LAMI (Molecular chaperone Prefoldin, subunit 1 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22564 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.9e-46
Identity = 106/128 (82.81%), Postives = 114/128 (89.06%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANR  FLEIQGRMIE TGKLKQVQ+Q+RNKEGEKKRA+LTLEELKQLSDDTN YKS
Sbjct: 1   MADEANRTAFLEIQGRMIETTGKLKQVQNQLRNKEGEKKRAYLTLEELKQLSDDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSEAA+ SLQ+SK+YLEKQ AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFILEPKSVLMEEQEQKLKDSEAAMSSLQTSKQYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIM+MSV
Sbjct: 121 RQIMAMSV 128

BLAST of Carg22670-RA vs. TrEMBL
Match: tr|A0A2P4IPN7|A0A2P4IPN7_QUESU (Prefoldin subunit 1 OS=Quercus suber OX=58331 GN=CFP56_67478 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.6e-45
Identity = 105/128 (82.03%), Postives = 113/128 (88.28%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADEANRA F+EIQGRMIE TGKLKQVQ+Q+RNKEGEKKRAFLTLEEL+QLS+DTN YKS
Sbjct: 1   MADEANRAAFMEIQGRMIETTGKLKQVQNQMRNKEGEKKRAFLTLEELRQLSNDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPKSVLM EQEQK KDSE AI SLQ+SKEYLE Q AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKSVLMNEQEQKLKDSETAIASLQASKEYLENQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIMSM+V
Sbjct: 121 RQIMSMTV 128

BLAST of Carg22670-RA vs. TrEMBL
Match: tr|A0A061FRM5|A0A061FRM5_THECC (Prefoldin 1 OS=Theobroma cacao OX=3641 GN=TCM_044384 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.6e-45
Identity = 104/128 (81.25%), Postives = 113/128 (88.28%), Query Frame = 0

Query: 1   MADEANRATFLEIQGRMIEITGKLKQVQSQVRNKEGEKKRAFLTLEELKQLSDDTNAYKS 60
           MADE N+  FLEIQGRMIE+TGKLKQVQ+Q+RNKEGEKKRA+LTLEEL+QLSDDTN YKS
Sbjct: 1   MADEVNKTAFLEIQGRMIELTGKLKQVQNQMRNKEGEKKRAYLTLEELRQLSDDTNTYKS 60

Query: 61  I------EPKSVLMAEQEQKFKDSEAAIVSLQSSKEYLEKQKAEVENNLRELLQQDPGIA 120
           I      EPK VLM EQEQK KDSE+AI SLQ+SKEYLEKQ AEVENNLRELLQQDPG+A
Sbjct: 61  IGRTFVLEPKPVLMNEQEQKLKDSESAIASLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 RQIMSMSV 123
           RQIMSMSV
Sbjct: 121 RQIMSMSV 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022937756.16.8e-5393.80prefoldin subunit 1-like [Cucurbita moschata][more]
XP_023536940.16.8e-5394.57prefoldin subunit 1-like [Cucurbita pepo subsp. pepo][more]
XP_022966081.13.4e-5293.02prefoldin subunit 1 [Cucurbita maxima][more]
XP_022929581.17.7e-4988.37prefoldin subunit 1-like [Cucurbita moschata][more]
XP_023546624.11.0e-4888.37prefoldin subunit 1-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT2G07340.15.3e-4474.22PREFOLDIN 1[more]
Match NameE-valueIdentityDescription
sp|Q3SZE2|PFD1_BOVIN7.2e-0631.78Prefoldin subunit 1 OS=Bos taurus OX=9913 GN=PFDN1 PE=2 SV=1[more]
sp|Q9CWM4|PFD1_MOUSE7.2e-0631.78Prefoldin subunit 1 OS=Mus musculus OX=10090 GN=Pfdn1 PE=1 SV=1[more]
sp|Q5RAM7|PFD1_PONAB7.2e-0631.78Prefoldin subunit 1 OS=Pongo abelii OX=9601 GN=PFDN1 PE=2 SV=1[more]
sp|O60925|PFD1_HUMAN2.7e-0530.84Prefoldin subunit 1 OS=Homo sapiens OX=9606 GN=PFDN1 PE=1 SV=2[more]
sp|Q54JS0|PFD1_DICDI5.2e-0423.64Probable prefoldin subunit 1 OS=Dictyostelium discoideum OX=44689 GN=pfdn1 PE=3 ... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0LJF7|A0A0A0LJF7_CUCSA5.7e-4886.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070850 PE=4 SV=1[more]
tr|A0A2I4EVP4|A0A2I4EVP4_9ROSI5.3e-4682.81prefoldin subunit 1 OS=Juglans regia OX=51240 GN=LOC108993147 PE=4 SV=1[more]
tr|A0A2G9GHY4|A0A2G9GHY4_9LAMI6.9e-4682.81Molecular chaperone Prefoldin, subunit 1 OS=Handroanthus impetiginosus OX=429701... [more]
tr|A0A2P4IPN7|A0A2P4IPN7_QUESU2.6e-4582.03Prefoldin subunit 1 OS=Quercus suber OX=58331 GN=CFP56_67478 PE=4 SV=1[more]
tr|A0A061FRM5|A0A061FRM5_THECC2.6e-4581.25Prefoldin 1 OS=Theobroma cacao OX=3641 GN=TCM_044384 PE=4 SV=1[more]
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
Vocabulary: INTERPRO
TermDefinition
IPR009053Prefoldin
IPR002777PFD_beta-like
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
cellular_component GO:0016272 prefoldin complex
molecular_function GO:0051082 unfolded protein binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg22670Carg22670gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg22670-RACarg22670-RA-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg22670-RA.CDS.5Carg22670-RA.CDS.5CDS
Carg22670-RA.CDS.4Carg22670-RA.CDS.4CDS
Carg22670-RA.CDS.3Carg22670-RA.CDS.3CDS
Carg22670-RA.CDS.2Carg22670-RA.CDS.2CDS
Carg22670-RA.CDS.1Carg22670-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg22670-RA.exon.5Carg22670-RA.exon.5exon
Carg22670-RA.exon.4Carg22670-RA.exon.4exon
Carg22670-RA.exon.3Carg22670-RA.exon.3exon
Carg22670-RA.exon.2Carg22670-RA.exon.2exon
Carg22670-RA.exon.1Carg22670-RA.exon.1exon


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 68..109
NoneNo IPR availableCOILSCoilCoilcoord: 31..51
NoneNo IPR availablePANTHERPTHR20903PREFOLDIN SUBUNIT 1-RELATEDcoord: 1..115
NoneNo IPR availableSUPERFAMILYSSF46579Prefoldincoord: 10..108
IPR002777Prefoldin beta-likePFAMPF01920Prefoldin_2coord: 13..109
e-value: 1.1E-9
score: 38.1
IPR009053PrefoldinGENE3DG3DSA:1.10.287.370coord: 8..112
e-value: 9.6E-7
score: 30.5