Carg22100 (gene) Silver-seed gourd

Overview
NameCarg22100
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat
LocationCucurbita_argyrosperma_scaffold_229 : 94052 .. 95479 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGCTTTATCGCTTCTGAGTGCGCGGATAGTCTGCAGATTGGTTTCAAGTTCTTTCATTGTGCGTCGAACAATTTGGAATCGGAGTTTTGGTAGTGATGACCGATTTGAGTTTGTTATGGAACCCTATAAGAAGGGGTTGGAGAGATCAGAGTCTTGTGAGTTTGAGAGTCTTAGATGCGATGATTTGTCTGTGAGAAGGGGTTTTCTAGAGGTTTCGAAAACTGATGCTGGAAAAGTTCTTGAGGTTCTCAAACAGGATGGTCCTGGATTTGACACATTAGTGGCTTTGGATGAACTCCAACTAAAGGTCTCAGGAGTTCTTGTTAGGGAAGTTTTGAGGGGGATTTTGAGAAGCATAAATGTTCTAAACAAAACTCAGTGTGCAAAATTGGGGTACAAGTTCTTCGTGTGGTCTGGTAAGGTTGAGAATTTCAACCACACCGCGAGTTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCAAGGCTATGTGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTGATATGTACTTGTGGTGATGCAGGGTTGGCTAGGAAAGTTGTCGTGAGGTTTATCAAATCGAAAACGTTCAATTACAGGCCGTTTAAGCACTCTTATAATGCTATTCTCCATGCACTTCTTGGTATAAAACAGTACAAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGATGGTCATAGCTCGGACATGCTGACATATAATTCGCTATTGTATGCAAGGTGCAAATTGGGGAAATTGGATCAGTTTCACAGATTGCTTGATGAAATGGCCAGGAACGGATTCTCTCCTGATTGTCATACTTATAACATTCTTCTCTATGTTCTTGGCAAAGGAGACAAGCCTCTTGCAGCTTTAAACCTTTTGAACCACATGAGGGAAGTGGGCTCTGATCCGAGCATTCTTCACTTCACGACGTTGATAAATGGACTTAGTCGGGCTGGAAATTTGGATGCTTGCAAATATTTTTTTGATGAACTTTCTAATAACGGCTGCACTCCTGATGTCGTTTGCTACACTGTGATGATCACAAGCTATACAGTAGCTGGGGAGCACGAAAAGGCTCGAGAACTTTTCGATGAGATGGTAATAAAGGGCCAACTCCCTAATGTATTTACATACAACTCCATGATTCGTGGGTTTTGTATGGTCGGTGAATTCGAGGAAGCTTACACTATGCTCGAAGAAATGGAATCCCGAGGCTGCAATCCAAATTTTCTTGTATATAGTACCCTTGTAAGTTATTTGCGAAACGCTGGACAGCTTTCCGAGGCTCACAAAGTTATTACACATATGGTCGAGAAGGGGCAATACGCGCATTTAGTGACGAAATTGAAGGGATATAGAAGATGCTAG

mRNA sequence

ATGAACGCTTTATCGCTTCTGAGTGCGCGGATAGTCTGCAGATTGGTTTCAAGTTCTTTCATTGTGCGTCGAACAATTTGGAATCGGAGTTTTGGTAGTGATGACCGATTTGAGTTTGTTATGGAACCCTATAAGAAGGGGTTGGAGAGATCAGAGTCTTGTGAGTTTGAGAGTCTTAGATGCGATGATTTGTCTGTGAGAAGGGGTTTTCTAGAGGTTTCGAAAACTGATGCTGGAAAAGTTCTTGAGGTTCTCAAACAGGATGGTCCTGGATTTGACACATTAGTGGCTTTGGATGAACTCCAACTAAAGGTCTCAGGAGTTCTTGTTAGGGAAGTTTTGAGGGGGATTTTGAGAAGCATAAATGTTCTAAACAAAACTCAGTGTGCAAAATTGGGGTACAAGTTCTTCGTGTGGTCTGGTAAGGTTGAGAATTTCAACCACACCGCGAGTTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCAAGGCTATGTGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTGATATGTACTTGTGGTGATGCAGGGTTGGCTAGGAAAGTTGTCGTGAGGTTTATCAAATCGAAAACGTTCAATTACAGGCCGTTTAAGCACTCTTATAATGCTATTCTCCATGCACTTCTTGGTATAAAACAGTACAAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGATGGTCATAGCTCGGACATGCTGACATATAATTCGCTATTGTATGCAAGGTGCAAATTGGGGAAATTGGATCAGTTTCACAGATTGCTTGATGAAATGGCCAGGAACGGATTCTCTCCTGATTGTCATACTTATAACATTCTTCTCTATGTTCTTGGCAAAGGAGACAAGCCTCTTGCAGCTTTAAACCTTTTGAACCACATGAGGGAAGTGGGCTCTGATCCGAGCATTCTTCACTTCACGACGTTGATAAATGGACTTAGTCGGGCTGGAAATTTGGATGCTTGCAAATATTTTTTTGATGAACTTTCTAATAACGGCTGCACTCCTGATGTCGTTTGCTACACTGTGATGATCACAAGCTATACAGTAGCTGGGGAGCACGAAAAGGCTCGAGAACTTTTCGATGAGATGGTAATAAAGGGCCAACTCCCTAATGTATTTACATACAACTCCATGATTCGTGGGTTTTGTATGGTCGGTGAATTCGAGGAAGCTTACACTATGCTCGAAGAAATGGAATCCCGAGGCTGCAATCCAAATTTTCTTGTATATAGTACCCTTGTAAGTTATTTGCGAAACGCTGGACAGCTTTCCGAGGCTCACAAAGTTATTACACATATGGTCGAGAAGGGGCAATACGCGCATTTAGTGACGAAATTGAAGGGATATAGAAGATGCTAG

Coding sequence (CDS)

ATGAACGCTTTATCGCTTCTGAGTGCGCGGATAGTCTGCAGATTGGTTTCAAGTTCTTTCATTGTGCGTCGAACAATTTGGAATCGGAGTTTTGGTAGTGATGACCGATTTGAGTTTGTTATGGAACCCTATAAGAAGGGGTTGGAGAGATCAGAGTCTTGTGAGTTTGAGAGTCTTAGATGCGATGATTTGTCTGTGAGAAGGGGTTTTCTAGAGGTTTCGAAAACTGATGCTGGAAAAGTTCTTGAGGTTCTCAAACAGGATGGTCCTGGATTTGACACATTAGTGGCTTTGGATGAACTCCAACTAAAGGTCTCAGGAGTTCTTGTTAGGGAAGTTTTGAGGGGGATTTTGAGAAGCATAAATGTTCTAAACAAAACTCAGTGTGCAAAATTGGGGTACAAGTTCTTCGTGTGGTCTGGTAAGGTTGAGAATTTCAACCACACCGCGAGTTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCAAGGCTATGTGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTGATATGTACTTGTGGTGATGCAGGGTTGGCTAGGAAAGTTGTCGTGAGGTTTATCAAATCGAAAACGTTCAATTACAGGCCGTTTAAGCACTCTTATAATGCTATTCTCCATGCACTTCTTGGTATAAAACAGTACAAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGATGGTCATAGCTCGGACATGCTGACATATAATTCGCTATTGTATGCAAGGTGCAAATTGGGGAAATTGGATCAGTTTCACAGATTGCTTGATGAAATGGCCAGGAACGGATTCTCTCCTGATTGTCATACTTATAACATTCTTCTCTATGTTCTTGGCAAAGGAGACAAGCCTCTTGCAGCTTTAAACCTTTTGAACCACATGAGGGAAGTGGGCTCTGATCCGAGCATTCTTCACTTCACGACGTTGATAAATGGACTTAGTCGGGCTGGAAATTTGGATGCTTGCAAATATTTTTTTGATGAACTTTCTAATAACGGCTGCACTCCTGATGTCGTTTGCTACACTGTGATGATCACAAGCTATACAGTAGCTGGGGAGCACGAAAAGGCTCGAGAACTTTTCGATGAGATGGTAATAAAGGGCCAACTCCCTAATGTATTTACATACAACTCCATGATTCGTGGGTTTTGTATGGTCGGTGAATTCGAGGAAGCTTACACTATGCTCGAAGAAATGGAATCCCGAGGCTGCAATCCAAATTTTCTTGTATATAGTACCCTTGTAAGTTATTTGCGAAACGCTGGACAGCTTTCCGAGGCTCACAAAGTTATTACACATATGGTCGAGAAGGGGCAATACGCGCATTTAGTGACGAAATTGAAGGGATATAGAAGATGCTAG

Protein sequence

MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLRCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRSINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKGYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIEWVYQQMLLDGHSSDMLTYNSLLYARCKLGKLDQFHRLLDEMARNGFSPDCHTYNILLYVLGKGDKPLAALNLLNHMREVGSDPSILHFTTLINGLSRAGNLDACKYFFDELSNNGCTPDVVCYTVMITSYTVAGEHEKARELFDEMVIKGQLPNVFTYNSMIRGFCMVGEFEEAYTMLEEMESRGCNPNFLVYSTLVSYLRNAGQLSEAHKVITHMVEKGQYAHLVTKLKGYRRC
Homology
[Close]
BLAST of Carg22100 vs. NCBI nr
Match: XP_022944812.1 (pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita moschata])

HSP 1 Score: 507.3 bits (1305), Expect = 5.7e-140
Identity = 253/256 (98.83%), Postives = 253/256 (98.83%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLR 60
           MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLR
Sbjct: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLR 60

Query: 61  CDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS 120
           CDDLSVRRGFLE SKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS
Sbjct: 61  CDDLSVRRGFLEDSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS 120

Query: 121 INVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKG 180
           INVLNKTQCAKLGYKFFVWSGKVENFNHTA SYHMIMKIFAECEEFKAMWRLVDEMTEKG
Sbjct: 121 INVLNKTQCAKLGYKFFVWSGKVENFNHTAGSYHMIMKIFAECEEFKAMWRLVDEMTEKG 180

Query: 181 YPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE 240
           YPVTARTFTLLICTCGDAGLARKVV RFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE
Sbjct: 181 YPVTARTFTLLICTCGDAGLARKVVERFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE 240

Query: 241 WVYQQMLLDGHSSDML 257
           WVYQQMLLDGHSSDML
Sbjct: 241 WVYQQMLLDGHSSDML 256

[Close]
BLAST of Carg22100 vs. NCBI nr
Match: XP_023542888.1 (pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 505.8 bits (1301), Expect = 1.6e-139
Identity = 251/256 (98.05%), Postives = 253/256 (98.83%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLR 60
           MNALSLLSARIVCRLVS+SFIVRRTIWNRSFGSDDRFEFVMEPYKKG ERSESCEFESLR
Sbjct: 1   MNALSLLSARIVCRLVSNSFIVRRTIWNRSFGSDDRFEFVMEPYKKGFERSESCEFESLR 60

Query: 61  CDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS 120
           CDDLSVRRGFLE SKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS
Sbjct: 61  CDDLSVRRGFLEDSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS 120

Query: 121 INVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKG 180
           INVLNKTQCAKLGYKFFVWSGK+ENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKG
Sbjct: 121 INVLNKTQCAKLGYKFFVWSGKIENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKG 180

Query: 181 YPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE 240
           YPVTARTFTLLICTCGDAGLARKVV RFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE
Sbjct: 181 YPVTARTFTLLICTCGDAGLARKVVERFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE 240

Query: 241 WVYQQMLLDGHSSDML 257
           WVYQQMLLDGHSSDML
Sbjct: 241 WVYQQMLLDGHSSDML 256

[Close]
BLAST of Carg22100 vs. NCBI nr
Match: XP_022968463.1 (pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita maxima])

HSP 1 Score: 494.6 bits (1272), Expect = 3.8e-136
Identity = 248/256 (96.88%), Postives = 251/256 (98.05%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLR 60
           MNALSLLS RIV RLVS+SFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLR
Sbjct: 1   MNALSLLSTRIVWRLVSNSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLR 60

Query: 61  CDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS 120
            DDLSVRRGFLE SKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS
Sbjct: 61  YDDLSVRRGFLEDSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS 120

Query: 121 INVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKG 180
           INVL+KTQCAKLGYKFFVWSGKVENFNHTASSYH+IMKIFAECEEFKAMWRLVDEMTEKG
Sbjct: 121 INVLDKTQCAKLGYKFFVWSGKVENFNHTASSYHLIMKIFAECEEFKAMWRLVDEMTEKG 180

Query: 181 YPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE 240
           YPVTARTFTLLICTCGDAGLARKVV RFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE
Sbjct: 181 YPVTARTFTLLICTCGDAGLARKVVERFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE 240

Query: 241 WVYQQMLLDGHSSDML 257
           WVYQQMLLDGHSSDML
Sbjct: 241 WVYQQMLLDGHSSDML 256

[Close]
BLAST of Carg22100 vs. NCBI nr
Match: XP_023552266.1 (pentatricopeptide repeat-containing protein At1g55630-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552267.1 pentatricopeptide repeat-containing protein At1g55630-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023552268.1 pentatricopeptide repeat-containing protein At1g55630-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.0 bits (1107), Expect = 5.2e-117
Identity = 218/266 (81.95%), Postives = 236/266 (88.72%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSE-------- 60
           MN+LSL+S+RIVCRL S+SFIVRRTI NRSFG DDRFEFV+EP KK LE SE        
Sbjct: 1   MNSLSLVSSRIVCRLFSTSFIVRRTICNRSFGGDDRFEFVVEPNKKRLEGSEFGYFTDEN 60

Query: 61  --SCEFESLRCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLV 120
             SCE  S R DDLS+RRGFLE +K  A KV+E+LKQDGPGFDTL+ALDELQL+VSGVLV
Sbjct: 61  SDSCEIGSRRGDDLSMRRGFLEGAKIGAEKVIEILKQDGPGFDTLLALDELQLQVSGVLV 120

Query: 121 REVLRGILRSINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMW 180
           REVL+GILRSINVLNKTQCAKLGYKFFVWS KVEN+ HTASSYHM+MKIFAECEEFKAMW
Sbjct: 121 REVLKGILRSINVLNKTQCAKLGYKFFVWSSKVENYRHTASSYHMVMKIFAECEEFKAMW 180

Query: 181 RLVDEMTEKGYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHAL 240
           RL+DEMTEKGYPVTARTF +LICTCGDAGLARKVV RFIKSKTFN+RPFKHSYNAILH L
Sbjct: 181 RLLDEMTEKGYPVTARTFMILICTCGDAGLARKVVERFIKSKTFNFRPFKHSYNAILHGL 240

Query: 241 LGIKQYKLIEWVYQQMLLDGHSSDML 257
           L IKQYKLIEWVYQQMLLDGHSSD+L
Sbjct: 241 LVIKQYKLIEWVYQQMLLDGHSSDIL 266

[Close]
BLAST of Carg22100 vs. NCBI nr
Match: XP_023552269.1 (pentatricopeptide repeat-containing protein At1g55630-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430.6 bits (1106), Expect = 6.7e-117
Identity = 217/266 (81.58%), Postives = 236/266 (88.72%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSE-------- 60
           MN+LSL+S+RIVCRL S+SFIVRRTI NRSFG DDRFEFV+EP KK LE SE        
Sbjct: 1   MNSLSLVSSRIVCRLFSTSFIVRRTICNRSFGGDDRFEFVVEPNKKRLEGSEFGYFTDEN 60

Query: 61  --SCEFESLRCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLV 120
             SCE  S R DDLS+RRGFLE +K  A KV+E+LKQDGPGFDTL+ALDELQL+VSGVLV
Sbjct: 61  SDSCEIGSRRGDDLSMRRGFLEGAKIGAEKVIEILKQDGPGFDTLLALDELQLQVSGVLV 120

Query: 121 REVLRGILRSINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMW 180
           REVL+GILRS+NVLNKTQCAK GYKFFVWSGKVEN+ HTASSYHM+MKIFAECEEFKAMW
Sbjct: 121 REVLKGILRSVNVLNKTQCAKSGYKFFVWSGKVENYRHTASSYHMVMKIFAECEEFKAMW 180

Query: 181 RLVDEMTEKGYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHAL 240
           RL+DEMTEKGYPVTARTF +LICTCGDAGLARKVV RFIKSKTFN+RPFKHSYNAILH L
Sbjct: 181 RLLDEMTEKGYPVTARTFMILICTCGDAGLARKVVERFIKSKTFNFRPFKHSYNAILHGL 240

Query: 241 LGIKQYKLIEWVYQQMLLDGHSSDML 257
           L IKQYKLIEWVYQQMLLDGHSSD+L
Sbjct: 241 LVIKQYKLIEWVYQQMLLDGHSSDIL 266

[Close]
BLAST of Carg22100 vs. TAIR10
Match: AT1G55630.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 290.4 bits (742), Expect = 2.0e-78
Identity = 150/258 (58.14%), Postives = 185/258 (71.71%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSE-SCEF-ES 60
           MN++   S  +  R  S      R   N S G D       EP K   E SE  CEF + 
Sbjct: 1   MNSVIHYSTSVAVRKASRFLFTSRKFCNGSIGGDVTDNGTEEPLKITWESSEMDCEFDQE 60

Query: 61  LRCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGIL 120
              + +SVR+ F+E +K  A +VL+ L+QD PGF+T  ALDEL + +SG+LVREVL GIL
Sbjct: 61  ENGEKISVRKRFMESTKLSASRVLDTLQQDCPGFNTKSALDELNVSISGLLVREVLVGIL 120

Query: 121 RSINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTE 180
           R+++  NKT+CAKL YKFFVW G  ENF HTA+ YH++MKIFAEC E+KAM RL+DEM +
Sbjct: 121 RTLSFDNKTRCAKLAYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIK 180

Query: 181 KGYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKL 240
            GYP TA TF LLICTCG+AGLAR VV +FIKSKTFNYRP+KHSYNAILH+LLG+KQYKL
Sbjct: 181 DGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKL 240

Query: 241 IEWVYQQMLLDGHSSDML 257
           I+WVY+QML DG + D+L
Sbjct: 241 IDWVYEQMLEDGFTPDVL 258

[Close]
BLAST of Carg22100 vs. TAIR10
Match: AT3G60050.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 269.6 bits (688), Expect = 3.6e-72
Identity = 140/256 (54.69%), Postives = 183/256 (71.48%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLR 60
           MN   +L   +V +     FI R+   N +FG ++      +      E S   E  S+ 
Sbjct: 1   MNLALVLGTNVVRKAYRFLFISRK-FCNGNFGGNEIDNGFPDLDCGFDEDSNISELRSID 60

Query: 61  CDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS 120
            + +SVR  FLE +   A +VL  L+ D  GF++   LDEL ++VSG+LVREVL GILR+
Sbjct: 61  REVISVRSRFLESANHSASRVLVTLQLDESGFNSKSVLDELNVRVSGLLVREVLVGILRN 120

Query: 121 INVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKG 180
           ++  NK +CAKL Y+FF+WSG+ E F HT +SYH++MKIFAEC E+KAMWRLVDEM + G
Sbjct: 121 LSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDG 180

Query: 181 YPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE 240
           +P TARTF LLIC+CG+AGLA++ VV+F+KSKTFNYRPFKHSYNAIL++LLG+KQYKLIE
Sbjct: 181 FPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIE 240

Query: 241 WVYQQMLLDGHSSDML 257
           WVY+QML DG S D+L
Sbjct: 241 WVYKQMLEDGFSPDVL 255

[Close]
BLAST of Carg22100 vs. TAIR10
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-10
Identity = 42/170 (24.71%), Postives = 78/170 (45.88%), Query Frame = 0 

Query: 77  DAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRSINVLNKTQCAKLGYKF 136
           D  K +  +    P      ALD+  L+VS  +V +VL                 L Y+F
Sbjct: 70  DVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRF---------RNAGLLTYRF 129

Query: 137 FVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKGYPVTARTFTLLICTCG 196
           F WS K  ++ H+  +YHM+++  A+  ++K MW L++ M +K   +   TF +++    
Sbjct: 130 FQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKM-LNVETFCIVMRKYA 189

Query: 197 DAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIEWVYQQM 247
            A    + +  F   + ++  P   ++N +L AL   K  +  + V++ M
Sbjct: 190 RAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM 229

[Close]
BLAST of Carg22100 vs. TAIR10
Match: AT1G52640.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-08
Identity = 36/141 (25.53%), Postives = 68/141 (48.23%), Query Frame = 0 

Query: 94  TLVALDELQLKVSGVLVREVLRGILRSINVLNKTQCAKLGY---KFFVWSGKVENFNHTA 153
           TLVA      +VS  LV +VL+            +C  LG+   +FF+W+ ++ +F H+ 
Sbjct: 58  TLVAYSP---RVSSNLVEQVLK------------RCKNLGFPAHRFFLWARRIPDFAHSL 117

Query: 154 SSYHMIMKIFAECEEFKAMWRLVDEMTEKGY-PVTARTFTLLICTCGDAGLARKVVVRFI 213
            SYH++++I    ++F  +W  + E  E  Y  ++++ F ++      A L  +    F 
Sbjct: 118 ESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFN 177

Query: 214 KSKTFNYRPFKHSYNAILHAL 231
           +   F  +P     + +LH+L
Sbjct: 178 RMVEFGIKPCVDDLDQLLHSL 183

[Close]
BLAST of Carg22100 vs. TAIR10
Match: AT1G77405.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-07
Identity = 30/119 (25.21%), Postives = 56/119 (47.06%), Query Frame = 0 

Query: 135 KFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMW---RLVDEMTEKGYPVTARTFTLL 194
           +FF W      F+H   +   +  + A+  +FK +W   R V         VT  + T L
Sbjct: 112 EFFFWIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCL 171

Query: 195 ICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIEWVYQQMLLDG 251
           +   G+ G  ++ +  F + K ++ +P  ++YN I++AL  +  +K   ++  QM L G
Sbjct: 172 MKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPG 230

[Close]
BLAST of Carg22100 vs. Swiss-Prot
Match: sp|Q7X6A5|PPR81_ARATH (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana OX=3702 GN=At1g55630 PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 3.6e-77
Identity = 150/258 (58.14%), Postives = 185/258 (71.71%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSE-SCEF-ES 60
           MN++   S  +  R  S      R   N S G D       EP K   E SE  CEF + 
Sbjct: 1   MNSVIHYSTSVAVRKASRFLFTSRKFCNGSIGGDVTDNGTEEPLKITWESSEMDCEFDQE 60

Query: 61  LRCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGIL 120
              + +SVR+ F+E +K  A +VL+ L+QD PGF+T  ALDEL + +SG+LVREVL GIL
Sbjct: 61  ENGEKISVRKRFMESTKLSASRVLDTLQQDCPGFNTKSALDELNVSISGLLVREVLVGIL 120

Query: 121 RSINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTE 180
           R+++  NKT+CAKL YKFFVW G  ENF HTA+ YH++MKIFAEC E+KAM RL+DEM +
Sbjct: 121 RTLSFDNKTRCAKLAYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIK 180

Query: 181 KGYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKL 240
            GYP TA TF LLICTCG+AGLAR VV +FIKSKTFNYRP+KHSYNAILH+LLG+KQYKL
Sbjct: 181 DGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKL 240

Query: 241 IEWVYQQMLLDGHSSDML 257
           I+WVY+QML DG + D+L
Sbjct: 241 IDWVYEQMLEDGFTPDVL 258

[Close]
BLAST of Carg22100 vs. Swiss-Prot
Match: sp|Q9M1D8|PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana OX=3702 GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 6.5e-71
Identity = 140/256 (54.69%), Postives = 183/256 (71.48%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSESCEFESLR 60
           MN   +L   +V +     FI R+   N +FG ++      +      E S   E  S+ 
Sbjct: 1   MNLALVLGTNVVRKAYRFLFISRK-FCNGNFGGNEIDNGFPDLDCGFDEDSNISELRSID 60

Query: 61  CDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRS 120
            + +SVR  FLE +   A +VL  L+ D  GF++   LDEL ++VSG+LVREVL GILR+
Sbjct: 61  REVISVRSRFLESANHSASRVLVTLQLDESGFNSKSVLDELNVRVSGLLVREVLVGILRN 120

Query: 121 INVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKG 180
           ++  NK +CAKL Y+FF+WSG+ E F HT +SYH++MKIFAEC E+KAMWRLVDEM + G
Sbjct: 121 LSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDG 180

Query: 181 YPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIE 240
           +P TARTF LLIC+CG+AGLA++ VV+F+KSKTFNYRPFKHSYNAIL++LLG+KQYKLIE
Sbjct: 181 FPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIE 240

Query: 241 WVYQQMLLDGHSSDML 257
           WVY+QML DG S D+L
Sbjct: 241 WVYKQMLEDGFSPDVL 255

[Close]
BLAST of Carg22100 vs. Swiss-Prot
Match: sp|Q9FVX2|PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 7.1e-09
Identity = 42/170 (24.71%), Postives = 78/170 (45.88%), Query Frame = 0 

Query: 77  DAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILRSINVLNKTQCAKLGYKF 136
           D  K +  +    P      ALD+  L+VS  +V +VL                 L Y+F
Sbjct: 70  DVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRF---------RNAGLLTYRF 129

Query: 137 FVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEKGYPVTARTFTLLICTCG 196
           F WS K  ++ H+  +YHM+++  A+  ++K MW L++ M +K   +   TF +++    
Sbjct: 130 FQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKM-LNVETFCIVMRKYA 189

Query: 197 DAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIEWVYQQM 247
            A    + +  F   + ++  P   ++N +L AL   K  +  + V++ M
Sbjct: 190 RAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM 229

[Close]
BLAST of Carg22100 vs. Swiss-Prot
Match: sp|Q9SSR6|PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-07
Identity = 36/141 (25.53%), Postives = 68/141 (48.23%), Query Frame = 0 

Query: 94  TLVALDELQLKVSGVLVREVLRGILRSINVLNKTQCAKLGY---KFFVWSGKVENFNHTA 153
           TLVA      +VS  LV +VL+            +C  LG+   +FF+W+ ++ +F H+ 
Sbjct: 58  TLVAYSP---RVSSNLVEQVLK------------RCKNLGFPAHRFFLWARRIPDFAHSL 117

Query: 154 SSYHMIMKIFAECEEFKAMWRLVDEMTEKGY-PVTARTFTLLICTCGDAGLARKVVVRFI 213
            SYH++++I    ++F  +W  + E  E  Y  ++++ F ++      A L  +    F 
Sbjct: 118 ESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFN 177

Query: 214 KSKTFNYRPFKHSYNAILHAL 231
           +   F  +P     + +LH+L
Sbjct: 178 RMVEFGIKPCVDDLDQLLHSL 183

[Close]
BLAST of Carg22100 vs. Swiss-Prot
Match: sp|Q1PFC5|PP130_ARATH (Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana OX=3702 GN=At1g77405 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.3e-06
Identity = 30/119 (25.21%), Postives = 56/119 (47.06%), Query Frame = 0 

Query: 135 KFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMW---RLVDEMTEKGYPVTARTFTLL 194
           +FF W      F+H   +   +  + A+  +FK +W   R V         VT  + T L
Sbjct: 112 EFFFWIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCL 171

Query: 195 ICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLIEWVYQQMLLDG 251
           +   G+ G  ++ +  F + K ++ +P  ++YN I++AL  +  +K   ++  QM L G
Sbjct: 172 MKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPG 230

[Close]
BLAST of Carg22100 vs. TrEMBL
Match: tr|A0A1S3AYB3|A0A1S3AYB3_CUCME (pentatricopeptide repeat-containing protein At1g55630-like OS=Cucumis melo OX=3656 GN=LOC103484076 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.9e-108
Identity = 194/257 (75.49%), Postives = 227/257 (88.33%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLE-RSESCEFESL 60
           MN+LSL+S+RIVCRL S+SFIVRRTIWNRSF SDDRF+FV+EP+    +  S+S E +S 
Sbjct: 1   MNSLSLVSSRIVCRLFSTSFIVRRTIWNRSFCSDDRFQFVVEPFSYFADGNSDSFETDSR 60

Query: 61  RCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILR 120
           R DD S+RR FL+ +K DA KV+E+LKQDGPGFDT +ALDEL+L+VSGVLV EVL+GIL+
Sbjct: 61  RWDDFSLRRSFLKDAKIDAEKVIEILKQDGPGFDTFLALDELKLQVSGVLVGEVLKGILK 120

Query: 121 SINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEK 180
           S +VLNKTQCAKLGYKFFVWS ++EN+ HT  SYHMIMKIFAECEEFKAMWRL+DEMTEK
Sbjct: 121 STSVLNKTQCAKLGYKFFVWSSRIENYRHTVKSYHMIMKIFAECEEFKAMWRLLDEMTEK 180

Query: 181 GYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLI 240
           GYPVTARTF +LICTCGDAGLA+KVV RFIKSKTFN+RP+KHSYNAILH L+ +KQYKLI
Sbjct: 181 GYPVTARTFMILICTCGDAGLAKKVVERFIKSKTFNFRPYKHSYNAILHGLVVVKQYKLI 240

Query: 241 EWVYQQMLLDGHSSDML 257
           EWVY+QMLLDGH  D+L
Sbjct: 241 EWVYEQMLLDGHGPDIL 257

[Close]
BLAST of Carg22100 vs. TrEMBL
Match: tr|A0A0A0L8P4|A0A0A0L8P4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182100 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 5.1e-105
Identity = 189/257 (73.54%), Postives = 225/257 (87.55%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLE-RSESCEFESL 60
           MN+LSL+S+RIVCRL S+SFIVRRTIWNR+F SDDRF+F +EP+    +  S+S E +S 
Sbjct: 1   MNSLSLVSSRIVCRLFSTSFIVRRTIWNRNFCSDDRFQFFVEPFSYLADGNSDSFETDSR 60

Query: 61  RCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVLRGILR 120
           R DD S RR FL+ +K DA KV+E+LKQDGPGFDT +ALDELQLKVSGVLV EVL+GIL+
Sbjct: 61  RWDDFSFRRSFLKDAKIDAEKVIEILKQDGPGFDTFLALDELQLKVSGVLVGEVLKGILK 120

Query: 121 SINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFKAMWRLVDEMTEK 180
           S +VLNKTQCAKLGYKFF+WSG++EN+ HT +SYH+IMKIFAECEEFKAMWR++DEMTEK
Sbjct: 121 SKSVLNKTQCAKLGYKFFIWSGRIENYRHTVNSYHIIMKIFAECEEFKAMWRVLDEMTEK 180

Query: 181 GYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAILHALLGIKQYKLI 240
           GYPVTARTF +LICTCG+AGLA++VV RFIKSKTFN+RP+KHSYNAILH L+ +KQYKLI
Sbjct: 181 GYPVTARTFMILICTCGEAGLAKRVVERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLI 240

Query: 241 EWVYQQMLLDGHSSDML 257
            WVY QMLLD HS D+L
Sbjct: 241 GWVYDQMLLDDHSPDIL 257

[Close]
BLAST of Carg22100 vs. TrEMBL
Match: tr|A0A251QNA4|A0A251QNA4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G294500 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.5e-83
Identity = 160/269 (59.48%), Postives = 203/269 (75.46%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFG---SDDRFEFVMEPYKKGL--------- 60
           MN +SL   R++ + +S  F+V R + +  FG    D+  EF+ EP K+           
Sbjct: 1   MNCISLFGPRVI-QKISCYFVVARKLSDGCFGGNKGDNGHEFIEEPLKRIWRSSDFDSVL 60

Query: 61  -ERSESCEFESLRCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSG 120
            E+    E+E+   +  S+RR F E +K    +VLEVL+QDGPGFDT  ALDEL ++VSG
Sbjct: 61  DEKQNVPEYENRPREYFSLRRSFFENAKIHTRRVLEVLQQDGPGFDTKAALDELHIEVSG 120

Query: 121 VLVREVLRGILRSINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFK 180
           +LVREVL  IL+ +N  +K +CAKLGYKFFVWSG++EN+ HTA++YH++MKIFA+CEEFK
Sbjct: 121 LLVREVLFKILKQVNYASKMRCAKLGYKFFVWSGQLENYRHTANTYHLMMKIFADCEEFK 180

Query: 181 AMWRLVDEMTEKGYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAIL 240
           AMWRLVDEM EKGYP TA+TF +LICTCG+AGLA+KVV RFIKSKTFNYRPFKHSYNAIL
Sbjct: 181 AMWRLVDEMIEKGYPTTAQTFNILICTCGEAGLAKKVVERFIKSKTFNYRPFKHSYNAIL 240

Query: 241 HALLGIKQYKLIEWVYQQMLLDGHSSDML 257
           H+L+ +KQYKLIEWVYQQML DGH +D+L
Sbjct: 241 HSLVVVKQYKLIEWVYQQMLADGHCTDIL 268

[Close]
BLAST of Carg22100 vs. TrEMBL
Match: tr|A0A2N9GTB9|A0A2N9GTB9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30482 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 7.2e-83
Identity = 160/269 (59.48%), Postives = 203/269 (75.46%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGS---DDRFEFVMEPYKK----------G 60
           MN++ L   R+V +L S  F+V R + +R F     D+ F  + EP K+           
Sbjct: 1   MNSIFLFGPRVVHKL-SCFFVVSRKLCDRGFDGDKVDNGFGCIEEPLKRMWRFSDFDIVS 60

Query: 61  LERSESCEFESLRCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSG 120
            E+ +  E+ S      SVR+ F +  K+DA +VLE+L+QDGPGFDT +ALD+L +++SG
Sbjct: 61  DEKPDGNEYGSCVQGYFSVRQSFFDTVKSDARRVLEILEQDGPGFDTKLALDKLCVRISG 120

Query: 121 VLVREVLRGILRSINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFK 180
           +LVREVL G+LR++N  +K +CAKLGYKFFVWSG+ EN+ HTA+SYH+IMKIFAEC+EFK
Sbjct: 121 LLVREVLLGVLRNVNYASKMRCAKLGYKFFVWSGQQENYRHTANSYHLIMKIFAECDEFK 180

Query: 181 AMWRLVDEMTEKGYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAIL 240
           AMWRLVDEM E G+P TARTF +LICTCG AGLARKVV RFIKSKTFN+RPFKHSYNAIL
Sbjct: 181 AMWRLVDEMIENGFPTTARTFNILICTCGGAGLARKVVERFIKSKTFNFRPFKHSYNAIL 240

Query: 241 HALLGIKQYKLIEWVYQQMLLDGHSSDML 257
           H+LL + QYKLIEWVYQQML++GHS D+L
Sbjct: 241 HSLLTVNQYKLIEWVYQQMLVEGHSPDIL 268

[Close]
BLAST of Carg22100 vs. TrEMBL
Match: tr|A0A2P5ABM2|A0A2P5ABM2_9ROSA (Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_354170 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.0e-81
Identity = 160/269 (59.48%), Postives = 198/269 (73.61%), Query Frame = 0 

Query: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSF---GSDDRFEFVMEPYKKGL--------- 60
           MN++SL    +V R  S   +VRR   NRSF     +++++   EP K+           
Sbjct: 1   MNSISLCGPSLVRRTCSYLVVVRR-FCNRSFDGGNGENKYDCFEEPLKRMWGSSYFDSAM 60

Query: 61  -ERSESCEFESLRCDDLSVRRGFLEVSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSG 120
            E+ +    E++     S RR F EV++ DAG+VLEVL+QDGPGFD+ +ALDEL ++VSG
Sbjct: 61  DEKPDVSADETMARPRFSARRSFFEVARIDAGRVLEVLRQDGPGFDSKLALDELHIRVSG 120

Query: 121 VLVREVLRGILRSINVLNKTQCAKLGYKFFVWSGKVENFNHTASSYHMIMKIFAECEEFK 180
           +LVREVL GILR +N  NK +CAKLG+KFF WS +  N+ HTA++YH++MKIFAECEEFK
Sbjct: 121 LLVREVLTGILRMVNYSNKIRCAKLGFKFFTWSSQQGNYRHTANTYHILMKIFAECEEFK 180

Query: 181 AMWRLVDEMTEKGYPVTARTFTLLICTCGDAGLARKVVVRFIKSKTFNYRPFKHSYNAIL 240
           AMWRLVDEM EKG+P TARTF +LICTCG+AGLAR+VV RFIKSKTFNYRPFKHSYNAIL
Sbjct: 181 AMWRLVDEMIEKGFPTTARTFNILICTCGEAGLARRVVERFIKSKTFNYRPFKHSYNAIL 240

Query: 241 HALLGIKQYKLIEWVYQQMLLDGHSSDML 257
           H LL   QYKLIEWVYQQML +GH  D+L
Sbjct: 241 HCLLVASQYKLIEWVYQQMLAEGHYPDIL 268

The following BLAST results are available for this feature:
BLAST of Carg22100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022944812.15.7e-14098.83pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita moschata][more]
XP_023542888.11.6e-13998.05pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita pepo subsp... [more]
XP_022968463.13.8e-13696.88pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita maxima][more]
XP_023552266.15.2e-11781.95pentatricopeptide repeat-containing protein At1g55630-like isoform X1 [Cucurbita... [more]
XP_023552269.16.7e-11781.58pentatricopeptide repeat-containing protein At1g55630-like isoform X4 [Cucurbita... [more]
BLAST of Carg22100 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55630.12.0e-7858.14Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G60050.13.6e-7254.69Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G77360.13.9e-1024.71Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G52640.14.8e-0825.53Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G77405.14.1e-0725.21Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg22100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q7X6A5|PPR81_ARATH3.6e-7758.14Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana OX... [more]
sp|Q9M1D8|PP288_ARATH6.5e-7154.69Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana OX... [more]
sp|Q9FVX2|PP129_ARATH7.1e-0924.71Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidop... [more]
sp|Q9SSR6|PPR78_ARATH8.6e-0725.53Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidop... [more]
sp|Q1PFC5|PP130_ARATH7.3e-0625.21Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg22100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AYB3|A0A1S3AYB3_CUCME4.9e-10875.49pentatricopeptide repeat-containing protein At1g55630-like OS=Cucumis melo OX=36... [more]
tr|A0A0A0L8P4|A0A0A0L8P4_CUCSA5.1e-10573.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182100 PE=4 SV=1[more]
tr|A0A251QNA4|A0A251QNA4_PRUPE2.5e-8359.48Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G294500 PE=4 SV=1[more]
tr|A0A2N9GTB9|A0A2N9GTB9_FAGSY7.2e-8359.48Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30482 PE=4 SV=1[more]
tr|A0A2P5ABM2|A0A2P5ABM2_9ROSA1.0e-8159.48Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_354170 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22100-RACarg22100-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 432..460
e-value: 0.23
score: 11.7
coord: 328..356
e-value: 2.9E-4
score: 20.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 291..324
e-value: 2.6E-4
score: 18.9
coord: 328..360
e-value: 5.7E-8
score: 30.5
coord: 152..184
e-value: 0.0029
score: 15.7
coord: 396..429
e-value: 4.5E-12
score: 43.4
coord: 361..394
e-value: 3.2E-7
score: 28.1
coord: 257..290
e-value: 2.6E-7
score: 28.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 255..299
e-value: 5.7E-11
score: 42.3
coord: 358..406
e-value: 4.3E-16
score: 58.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 289..323
score: 9.536
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 184..218
score: 5.963
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 149..183
score: 8.791
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 359..393
score: 11.498
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 394..428
score: 14.458
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 254..288
score: 12.09
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 429..463
score: 8.583
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 219..253
score: 6.697
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 324..358
score: 10.315
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 320..388
e-value: 2.3E-16
score: 61.8
coord: 389..461
e-value: 2.1E-19
score: 71.7
coord: 213..319
e-value: 5.2E-17
score: 63.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 121..212
e-value: 4.3E-7
score: 31.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 363..463
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..473
NoneNo IPR availablePANTHERPTHR24015:SF361SUBFAMILY NOT NAMEDcoord: 1..473
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 234..425