Carg22064 (gene) Silver-seed gourd

Overview
NameCarg22064
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEthylene-responsive transcription factor
LocationCucurbita_argyrosperma_scaffold_175 : 427307 .. 427984 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCCTACCGCCCCGCCGTCTTCCGCCGCATCACCGAGGAGCAGGAGGTCTCTATCATTGTCGACGCCCTCACCCACGTCATCTCCGGCGCCGCTGCTTCCGGTCTCGAGTTCCGCCACGACGATTTCCTCCGCCGCCTCCTCCTCCCGCCTTCTACTGACAATACCGCCGCCGCCTTCTCGGGTTCTTCAGATTTCGACACGTGTCAAGCCTGCAGAATCAACGGCTGCTTGGGCTGCCACTTCTTCTCCGCCCCCTCCTCCTCCTCCTCCTCCACCCGCCGTATCAGACGCCTGAAGAAGAATTACAGAGGCGTCCGCCTGCGCCCTTGGGGCAAATGGGCCGCCGAGATCCGCGACCCGAAACGTGCGACGCGAGTCTGGCTTGGTACCTTCAACACCGCCGAGGACGCCGCACGTGCCTACGATGAAGCCGCCATTAAATTCCGCGGCGCACGTGCCAAACTCAATTTCCCCCTCCCTGGCAATTCATCAACGACTTCCACAACCACCTCCGCCGTCAATGAATCGGCAGTAGCTCCAAGAACATCGCCGATGAAAATGGAGACGAAAAACTACACCTTACCCGAGATTTTCAAGGTCGATGACGACGACGACGACAACGACGACATTCAACGATTGATCAATGACTTTGCAGGCCATTCACGAAGCTAA

mRNA sequence

ATGTCATCCTACCGCCCCGCCGTCTTCCGCCGCATCACCGAGGAGCAGGAGGTCTCTATCATTGTCGACGCCCTCACCCACGTCATCTCCGGCGCCGCTGCTTCCGGTCTCGAGTTCCGCCACGACGATTTCCTCCGCCGCCTCCTCCTCCCGCCTTCTACTGACAATACCGCCGCCGCCTTCTCGGGTTCTTCAGATTTCGACACGTGTCAAGCCTGCAGAATCAACGGCTGCTTGGGCTGCCACTTCTTCTCCGCCCCCTCCTCCTCCTCCTCCTCCACCCGCCGTATCAGACGCCTGAAGAAGAATTACAGAGGCGTCCGCCTGCGCCCTTGGGGCAAATGGGCCGCCGAGATCCGCGACCCGAAACGTGCGACGCGAGTCTGGCTTGGTACCTTCAACACCGCCGAGGACGCCGCACGTGCCTACGATGAAGCCGCCATTAAATTCCGCGGCGCACGTGCCAAACTCAATTTCCCCCTCCCTGGCAATTCATCAACGACTTCCACAACCACCTCCGCCGTCAATGAATCGGCAGTAGCTCCAAGAACATCGCCGATGAAAATGGAGACGAAAAACTACACCTTACCCGAGATTTTCAAGGTCGATGACGACGACGACGACAACGACGACATTCAACGATTGATCAATGACTTTGCAGGCCATTCACGAAGCTAA

Coding sequence (CDS)

ATGTCATCCTACCGCCCCGCCGTCTTCCGCCGCATCACCGAGGAGCAGGAGGTCTCTATCATTGTCGACGCCCTCACCCACGTCATCTCCGGCGCCGCTGCTTCCGGTCTCGAGTTCCGCCACGACGATTTCCTCCGCCGCCTCCTCCTCCCGCCTTCTACTGACAATACCGCCGCCGCCTTCTCGGGTTCTTCAGATTTCGACACGTGTCAAGCCTGCAGAATCAACGGCTGCTTGGGCTGCCACTTCTTCTCCGCCCCCTCCTCCTCCTCCTCCTCCACCCGCCGTATCAGACGCCTGAAGAAGAATTACAGAGGCGTCCGCCTGCGCCCTTGGGGCAAATGGGCCGCCGAGATCCGCGACCCGAAACGTGCGACGCGAGTCTGGCTTGGTACCTTCAACACCGCCGAGGACGCCGCACGTGCCTACGATGAAGCCGCCATTAAATTCCGCGGCGCACGTGCCAAACTCAATTTCCCCCTCCCTGGCAATTCATCAACGACTTCCACAACCACCTCCGCCGTCAATGAATCGGCAGTAGCTCCAAGAACATCGCCGATGAAAATGGAGACGAAAAACTACACCTTACCCGAGATTTTCAAGGTCGATGACGACGACGACGACAACGACGACATTCAACGATTGATCAATGACTTTGCAGGCCATTCACGAAGCTAA

Protein sequence

MSSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAFSGSSDFDTCQACRINGCLGCHFFSAPSSSSSSTRRIRRLKKNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAVNESAVAPRTSPMKMETKNYTLPEIFKVDDDDDDNDDIQRLINDFAGHSRS
Homology
[Close]
BLAST of Carg22064 vs. NCBI nr
Match: XP_022952769.1 (ethylene-responsive transcription factor ERF109-like [Cucurbita moschata])

HSP 1 Score: 375.2 bits (962), Expect = 1.6e-100
Identity = 209/226 (92.48%), Postives = 210/226 (92.92%), Query Frame = 0 

Query: 1   MSSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAA 60
           MSSYRPAVFR ITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAA
Sbjct: 1   MSSYRPAVFRSITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAA 60

Query: 61  FSGSSDFDTCQACRINGCLGCHFFSA-PXXXXXXXXXXXXXXKNYRGVRLRPWGKWAAEI 120
           FSGSSDFDTCQ CRINGCLGCHFFS   XXXXXXXXXXXXXX NYRGVRLRPWGKWAAEI
Sbjct: 61  FSGSSDFDTCQDCRINGCLGCHFFSTXXXXXXXXXXXXXXXXXNYRGVRLRPWGKWAAEI 120

Query: 121 RDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAVNESA 180
           RDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAVNE A
Sbjct: 121 RDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAVNEPA 180

Query: 181 VAPRTSPMKMETKNYTLPEIFKVDXXXXXXXXIQRLINDFAGHSRS 226
           VAPR SPMKMETK+YTLPEIFKVD        IQRLINDFAGHSRS
Sbjct: 181 VAPRASPMKMETKHYTLPEIFKVD----DDDDIQRLINDFAGHSRS 222

[Close]
BLAST of Carg22064 vs. NCBI nr
Match: XP_022972447.1 (ethylene-responsive transcription factor ERF109-like [Cucurbita maxima])

HSP 1 Score: 327.8 bits (839), Expect = 2.9e-86
Identity = 187/230 (81.30%), Postives = 188/230 (81.74%), Query Frame = 0 

Query: 1   MSSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLR--RLLLPPSTDNTA 60
           MSSYRPAVFRRITEEQEVSIIVDALTHV+SGAAASGLEFRHDDFLR              
Sbjct: 1   MSSYRPAVFRRITEEQEVSIIVDALTHVVSGAAASGLEFRHDDFLRXXXXXXXXXXXXXX 60

Query: 61  AAFSGSSDFDTCQACRINGCLGCHFFSAP-----XXXXXXXXXXXXXXKNYRGVRLRPWG 120
            AFSGSSDFDTCQ CRINGCLGCH FSAP     XXXXXXXXXXX   KNYRGVRLRPWG
Sbjct: 61  XAFSGSSDFDTCQDCRINGCLGCHLFSAPXXXXXXXXXXXXXXXXLLKKNYRGVRLRPWG 120

Query: 121 KWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTS 180
           KWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLP NSST     S
Sbjct: 121 KWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPNNSSTXXXXXS 180

Query: 181 AVNESAVAPRTSPMKMETKNYTLPEIFKVDXXXXXXXXIQRLINDFAGHS 224
           AVNE AVAPR SPMKME KNYTLPEIFKVD        IQRLINDFAGHS
Sbjct: 181 AVNELAVAPRASPMKMEAKNYTLPEIFKVD--DDDENDIQRLINDFAGHS 228

[Close]
BLAST of Carg22064 vs. NCBI nr
Match: XP_022988906.1 (ethylene-responsive transcription factor 11-like [Cucurbita maxima])

HSP 1 Score: 234.2 bits (596), Expect = 4.4e-58
Identity = 151/255 (59.22%), Postives = 165/255 (64.71%), Query Frame = 0 

Query: 2   SSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAF 61
           S +  A F R+T+EQE  +IVDALT V+SGAAA+GLEFRHD FL RLL PPST+NT   F
Sbjct: 5   SHHNSAAFPRLTDEQEGVVIVDALTQVVSGAAAAGLEFRHDHFL-RLLHPPSTNNTTTIF 64

Query: 62  SGSSDFDTCQACRINGCLGCHFFSAP-----------XXXXXXXXXXXXXXKNYRGVRLR 121
             SSDFDTC  CRI+GCLGC+FFS P           XXXXXXXXXXX   KNYRGVR R
Sbjct: 65  PPSSDFDTCHICRISGCLGCNFFSTPYSHQPXXXXXXXXXXXXXXXXXRLKKNYRGVRQR 124

Query: 122 PWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTST 181
           PWGKWAAEIRDPKRA RVWLGTFNTAE+AARAYDEAAIKFRG RA+LNFP   NS TT  
Sbjct: 125 PWGKWAAEIRDPKRAARVWLGTFNTAEEAARAYDEAAIKFRGPRARLNFPSSDNSLTTFN 184

Query: 182 TTSAV-------------------NESAVAPRT-SPMKMETKNYTLPEIFKVDXXXXXXX 226
            +                         AVAPRT S M     N  L EIF+ D       
Sbjct: 185 YSPPAXXXXXXXXXXXXXXXXXXXXXXAVAPRTPSSMMKIQNNVVLAEIFEDD------D 244

[Close]
BLAST of Carg22064 vs. NCBI nr
Match: XP_022927865.1 (ethylene-responsive transcription factor 11-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 232.3 bits (591), Expect = 1.7e-57
Identity = 148/254 (58.27%), Postives = 164/254 (64.57%), Query Frame = 0 

Query: 2   SSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAF 61
           S +  A F R+T+EQE  +IVDALT V+SGAAA+GLEFRHD FL RLL PPST+ T   F
Sbjct: 5   SHHHSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFL-RLLHPPSTNTTTTIF 64

Query: 62  SGSSDFDTCQACRINGCLGCHFFSAP----------XXXXXXXXXXXXXXKNYRGVRLRP 121
             SSDFDTC  CRI+GCLGC+FFS P          XXXXXXXXXX    KNYRGVR RP
Sbjct: 65  PPSSDFDTCHICRISGCLGCNFFSTPSXXXXXXXXXXXXXXXXXXXRRLKKNYRGVRQRP 124

Query: 122 WGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTT 181
           WGKWAAEIRDPKRA RVWLGTFNTAE+AARAYDEAAIKFRG RA+LNFP   NS  T   
Sbjct: 125 WGKWAAEIRDPKRAARVWLGTFNTAEEAARAYDEAAIKFRGPRARLNFPSSDNSLMTFNY 184

Query: 182 TSAV-------------------NESAVAPRTSPMKMETK-NYTLPEIFKVDXXXXXXXX 226
           +                        +AVAPRT    ME + N  L EIF+ D        
Sbjct: 185 SPPAXXXXXXXXXXXXXXXXXXXXXAAVAPRTPSSMMEIQNNVVLAEIFEDD------DD 244

[Close]
BLAST of Carg22064 vs. NCBI nr
Match: XP_022927864.1 (ethylene-responsive transcription factor 11-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 228.4 bits (581), Expect = 2.4e-56
Identity = 148/264 (56.06%), Postives = 164/264 (62.12%), Query Frame = 0 

Query: 2   SSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAF 61
           S +  A F R+T+EQE  +IVDALT V+SGAAA+GLEFRHD FL RLL PPST+ T   F
Sbjct: 5   SHHHSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFL-RLLHPPSTNTTTTIF 64

Query: 62  SGSSDFDTCQACRINGCLGCHFFSAP----------XXXXXXXXXXXXXXKNYRGVRLRP 121
             SSDFDTC  CRI+GCLGC+FFS P          XXXXXXXXXX    KNYRGVR RP
Sbjct: 65  PPSSDFDTCHICRISGCLGCNFFSTPSXXXXXXXXXXXXXXXXXXXRRLKKNYRGVRQRP 124

Query: 122 WGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTT 181
           WGKWAAEIRDPKRA RVWLGTFNTAE+AARAYDEAAIKFRG RA+LNFP   NS  T   
Sbjct: 125 WGKWAAEIRDPKRAARVWLGTFNTAEEAARAYDEAAIKFRGPRARLNFPSSDNSLMTFNY 184

Query: 182 TSAV-----------------------------NESAVAPRTSPMKMETK-NYTLPEIFK 226
           +                                  +AVAPRT    ME + N  L EIF+
Sbjct: 185 SPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVAPRTPSSMMEIQNNVVLAEIFE 244

[Close]
BLAST of Carg22064 vs. TAIR10
Match: AT4G34410.1 (redox responsive transcription factor 1)

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-33
Identity = 103/199 (51.76%), Postives = 118/199 (59.30%), Query Frame = 0 

Query: 11  RITEEQEVSIIVDALTHVISG----AAASGLEFRHDDFLRRLLLPPSTDNTA-AAFSGSS 70
           +++ EQE+S+IV AL HVISG    A   G                S+D+T  +A     
Sbjct: 23  QLSPEQELSVIVSALQHVISGENETAPCQGF---------------SSDSTVISAGMPRL 82

Query: 71  DFDTCQACRINGCLGCHFFSAP------------------------------XXXXXXXX 130
           D DTCQ CRI GCLGC++F AP                              XXXXXXXX
Sbjct: 83  DSDTCQVCRIEGCLGCNYFFAPNQRIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142

Query: 131 XXXXXXKNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARA 175
           XXXXXX  YRGVR RPWGK+AAEIRDPKRATRVWLGTF TAEDAARAYD AAI FRG RA
Sbjct: 143 XXXXXXNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRA 202

[Close]
BLAST of Carg22064 vs. TAIR10
Match: AT5G13330.1 (related to AP2 6l)

HSP 1 Score: 108.6 bits (270), Expect = 5.0e-24
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPL 161
           ++YRGVR RPWGKWAAEIRDPK+A RVWLGTF TAE+AA AYD AA+KF+G +AKLNFP 
Sbjct: 37  RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPE 96

Query: 162 PGNSSTTSTTTS 174
                TT+TT S
Sbjct: 97  RVQGPTTTTTIS 108

[Close]
BLAST of Carg22064 vs. TAIR10
Match: AT1G43160.1 (related to AP2 6)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0 

Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFP 161
           K YRGVR RPWGKWAAEIRDP +ATRVWLGTF TAE AARAYD AA++FRG++AKLNFP
Sbjct: 59  KKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117

[Close]
BLAST of Carg22064 vs. TAIR10
Match: AT5G50080.1 (ethylene response factor 110)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-23
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0 

Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFP 161
           + YRGVR RPWGKWAAEIRDP RA RVWLGTF+TAE AARAYDEAA++FRG +AKLNFP
Sbjct: 75  RRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133

[Close]
BLAST of Carg22064 vs. TAIR10
Match: AT5G61890.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 4.3e-23
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 0 

Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPL 161
           ++YRGVR RPWGKWAAEIRDPK+A RVWLGTF TAE AA AYDEAA+KF+G++AKLNFP 
Sbjct: 88  RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPE 147

Query: 162 PGNSSTTSTTTSAVNESAVAPRTSP 187
                + ST  S+     + P++ P
Sbjct: 148 RVQLGSNSTYYSSNQIPQMEPQSIP 172

[Close]
BLAST of Carg22064 vs. Swiss-Prot
Match: sp|Q9SZ06|EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana OX=3702 GN=ERF109 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.8e-32
Identity = 103/199 (51.76%), Postives = 118/199 (59.30%), Query Frame = 0 

Query: 11  RITEEQEVSIIVDALTHVISG----AAASGLEFRHDDFLRRLLLPPSTDNTA-AAFSGSS 70
           +++ EQE+S+IV AL HVISG    A   G                S+D+T  +A     
Sbjct: 23  QLSPEQELSVIVSALQHVISGENETAPCQGF---------------SSDSTVISAGMPRL 82

Query: 71  DFDTCQACRINGCLGCHFFSAP------------------------------XXXXXXXX 130
           D DTCQ CRI GCLGC++F AP                              XXXXXXXX
Sbjct: 83  DSDTCQVCRIEGCLGCNYFFAPNQRIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142

Query: 131 XXXXXXKNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARA 175
           XXXXXX  YRGVR RPWGK+AAEIRDPKRATRVWLGTF TAEDAARAYD AAI FRG RA
Sbjct: 143 XXXXXXNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRA 202

[Close]
BLAST of Carg22064 vs. Swiss-Prot
Match: sp|Q9LYU3|EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana OX=3702 GN=ERF113 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.1e-23
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPL 161
           ++YRGVR RPWGKWAAEIRDPK+A RVWLGTF TAE+AA AYD AA+KF+G +AKLNFP 
Sbjct: 37  RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPE 96

Query: 162 PGNSSTTSTTTS 174
                TT+TT S
Sbjct: 97  RVQGPTTTTTIS 108

[Close]
BLAST of Carg22064 vs. Swiss-Prot
Match: sp|Q7G1L2|RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana OX=3702 GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-22
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0 

Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFP 161
           K YRGVR RPWGKWAAEIRDP +ATRVWLGTF TAE AARAYD AA++FRG++AKLNFP
Sbjct: 59  KKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117

[Close]
BLAST of Carg22064 vs. Swiss-Prot
Match: sp|Q70II3|EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana OX=3702 GN=ERF110 PE=2 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-22
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0 

Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFP 161
           + YRGVR RPWGKWAAEIRDP RA RVWLGTF+TAE AARAYDEAA++FRG +AKLNFP
Sbjct: 75  RRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133

[Close]
BLAST of Carg22064 vs. Swiss-Prot
Match: sp|Q9FH54|EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana OX=3702 GN=ERF114 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.7e-22
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 0 

Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPL 161
           ++YRGVR RPWGKWAAEIRDPK+A RVWLGTF TAE AA AYDEAA+KF+G++AKLNFP 
Sbjct: 88  RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPE 147

Query: 162 PGNSSTTSTTTSAVNESAVAPRTSP 187
                + ST  S+     + P++ P
Sbjct: 148 RVQLGSNSTYYSSNQIPQMEPQSIP 172

[Close]
BLAST of Carg22064 vs. TrEMBL
Match: tr|A0A2H4V3T2|A0A2H4V3T2_LUFAE (Ethylene-responsive transcription factor OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 136/250 (54.40%), Postives = 151/250 (60.40%), Query Frame = 0 

Query: 9   FRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAFSGSSDFD 68
           FRRIT+EQE+S+IVDALT V+SG AA GLEF+HD FL RLLLP + D  AA F  SSDFD
Sbjct: 11  FRRITDEQELSVIVDALTQVVSGPAADGLEFQHDRFL-RLLLPSAND--AAVFPPSSDFD 70

Query: 69  TCQACRINGCLGCHFFSAP--------XXXXXXXXXXXXXXKNYRGVRLRPWGKWAAEIR 128
           TC  CRI+GCLGC+FFSAP                      KNYRGVR RPWGKWAAEIR
Sbjct: 71  TCHVCRISGCLGCNFFSAPSSHQQPTTANSNNSGRRVRRQKKNYRGVRQRPWGKWAAEIR 130

Query: 129 DPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAV----- 188
           DPKRA RVWLGTFNTAEDAARAYD AAIKFRG RA+LNFP    S  T   +        
Sbjct: 131 DPKRAARVWLGTFNTAEDAARAYDAAAIKFRGPRARLNFPSTDTSLMTFNYSXXXXXXXX 190

Query: 189 -----------------NESAVAPRTS---PMKMETKNYTLPEIFKVDXXXXXXXXIQRL 226
                            NE+AVAPRTS    M++       PE+   D        +Q L
Sbjct: 191 XXXXXXXXXXXXXXXFQNEAAVAPRTSSSTKMEIIQNEVVFPEMLDED------DDLQTL 250

[Close]
BLAST of Carg22064 vs. TrEMBL
Match: tr|A0A1S3BZ96|A0A1S3BZ96_CUCME (ethylene-responsive transcription factor ERF109-like OS=Cucumis melo OX=3656 GN=LOC103495234 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.5e-50
Identity = 119/174 (68.39%), Postives = 128/174 (73.56%), Query Frame = 0 

Query: 9   FRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAFSGSSDFD 68
           FRRITEEQE+S++VDALT V+SGA++S L F HD FL RLL PP        FS SS+FD
Sbjct: 9   FRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFL-RLLFPPI--XXXXXFSSSSEFD 68

Query: 69  TCQACRINGCLGCHFFS--------------APXXXXXXXXXXXXXXKNYRGVRLRPWGK 128
           TC  C+INGCLGCHFFS                XXXXXXXXX     KNYRGVR RPWGK
Sbjct: 69  TCPLCKINGCLGCHFFSXXXXXXXXXXXXXXXXXXXXXXXXXVKRLKKNYRGVRQRPWGK 128

Query: 129 WAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTT 169
           WAAEIRDPKRA RVWLGTFNTAEDAARAYDEAAIKFRG RAKLNFP P  S +T
Sbjct: 129 WAAEIRDPKRAARVWLGTFNTAEDAARAYDEAAIKFRGPRAKLNFPFPDYSLST 179

[Close]
BLAST of Carg22064 vs. TrEMBL
Match: tr|A0A0A0K4S2|A0A0A0K4S2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073700 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.9e-49
Identity = 124/177 (70.06%), Postives = 135/177 (76.27%), Query Frame = 0 

Query: 4   YRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAFSG 63
           + PA FRRITEEQE+S+IVDALT V+SGA +S L F HD FL R+L PP   N    FS 
Sbjct: 8   FSPA-FRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFL-RVLFPPI--NPTPPFSS 67

Query: 64  SSDFDTCQACRINGCLGCHFFS-----------APXXXXXXXXXXXXXXKNYRGVRLRPW 123
           SS+FDTC  C+INGCLGCHFFS             XXXXXXXXXXXXXX NYRGVR RPW
Sbjct: 68  SSEFDTCPLCKINGCLGCHFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYRGVRQRPW 127

Query: 124 GKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTS 170
           GKWAAEIRDP RA RVWLGTFNTAEDAARAYDEAAIKFRG RAKLNFP P  S +++
Sbjct: 128 GKWAAEIRDPIRAARVWLGTFNTAEDAARAYDEAAIKFRGPRAKLNFPFPDYSLSST 180

[Close]
BLAST of Carg22064 vs. TrEMBL
Match: tr|B9RYI3|B9RYI3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0813580 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 94/174 (54.02%), Postives = 111/174 (63.79%), Query Frame = 0 

Query: 10  RRITEEQEVSIIVDALTHVISGAAASGLEFRHD--DFLRRLLLPPS-----TDNTAAAFS 69
           +R+T+EQE +I+V AL +V+SG+A+S      D    L  L  P S     T  TAAA +
Sbjct: 35  QRLTQEQEFAIMVAALGNVLSGSASSSTAMASDFSQELFHLSFPSSNSQFATSGTAAAAT 94

Query: 70  GSS------DFDTCQACRINGCLGCHFF----SAPXXXXXXXXXXXXXXKNYRGVRLRPW 129
             +      D DTC  C+I GCLGC+FF                     KNYRGVR RPW
Sbjct: 95  AINPILPPLDLDTCNVCKIRGCLGCNFFPPNQEESSNGNNKKGTRKRGKKNYRGVRQRPW 154

Query: 130 GKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSS 167
           GKWAAEIRDP+RATRVWLGTFNTAEDAARAYD+AAI+FRG RAKLNFP P N+S
Sbjct: 155 GKWAAEIRDPRRATRVWLGTFNTAEDAARAYDKAAIEFRGPRAKLNFPFPDNTS 208

[Close]
BLAST of Carg22064 vs. TrEMBL
Match: tr|A0A2C9V3H0|A0A2C9V3H0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G056300 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.2e-37
Identity = 91/176 (51.70%), Postives = 105/176 (59.66%), Query Frame = 0 

Query: 11  RITEEQEVSIIVDALTHVISGAAAS------------GLEF-----RHDDFLRRLLLPPS 70
           R+T+EQE+SI+V AL +V+SG A +             L+F         F         
Sbjct: 24  RLTQEQELSIMVAALKNVVSGGATNTATLTDVSQELFRLQFSTTAATSSQFATSSSATTV 83

Query: 71  TDNTAAAFSGSSDFDTCQACRINGCLGCHFFSAPXXXXXXXXXXXXXXKNYRGVRLRPWG 130
           TD   +     SD DTC  C+I GCLGC+FF  P              KNYRGVR RPWG
Sbjct: 84  TDGFCSPLLPPSDLDTCNVCKIKGCLGCNFF--PPNQEEKKGKRKRVKKNYRGVRQRPWG 143

Query: 131 KWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTS 170
           KWAAEIRDP+RATRVWLGTFNTAE+AARAYD+AAI FRG RAKLNFP P N   TS
Sbjct: 144 KWAAEIRDPRRATRVWLGTFNTAEEAARAYDKAAIDFRGPRAKLNFPFPDNIGNTS 197

The following BLAST results are available for this feature:
BLAST of Carg22064 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952769.11.6e-10092.48ethylene-responsive transcription factor ERF109-like [Cucurbita moschata][more]
XP_022972447.12.9e-8681.30ethylene-responsive transcription factor ERF109-like [Cucurbita maxima][more]
XP_022988906.14.4e-5859.22ethylene-responsive transcription factor 11-like [Cucurbita maxima][more]
XP_022927865.11.7e-5758.27ethylene-responsive transcription factor 11-like isoform X2 [Cucurbita moschata][more]
XP_022927864.12.4e-5656.06ethylene-responsive transcription factor 11-like isoform X1 [Cucurbita moschata][more]
BLAST of Carg22064 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34410.12.7e-3351.76redox responsive transcription factor 1[more]
AT5G13330.15.0e-2470.83related to AP2 6l[more]
AT1G43160.11.5e-2381.36related to AP2 6[more]
AT5G50080.11.9e-2381.36ethylene response factor 110[more]
AT5G61890.14.3e-2361.18Integrase-type DNA-binding superfamily protein[more]
BLAST of Carg22064 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SZ06|EF109_ARATH4.8e-3251.76Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q9LYU3|EF113_ARATH9.1e-2370.83Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q7G1L2|RAP26_ARATH2.6e-2281.36Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q70II3|EF110_ARATH3.5e-2281.36Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q9FH54|EF114_ARATH7.7e-2261.18Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Carg22064 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2H4V3T2|A0A2H4V3T2_LUFAE1.3e-5554.40Ethylene-responsive transcription factor OS=Luffa aegyptiaca OX=3670 PE=2 SV=1[more]
tr|A0A1S3BZ96|A0A1S3BZ96_CUCME6.5e-5068.39ethylene-responsive transcription factor ERF109-like OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A0A0K4S2|A0A0A0K4S2_CUCSA1.9e-4970.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073700 PE=4 SV=1[more]
tr|B9RYI3|B9RYI3_RICCO1.5e-3854.02Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0813580 PE=4 SV=1[more]
tr|A0A2C9V3H0|A0A2C9V3H0_MANES2.2e-3751.70Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G056300 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR036955AP2/ERF_dom_sf
IPR001471AP2/ERF_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22064-RACarg22064-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 104..115
score: 73.48
coord: 126..142
score: 72.19
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 103..166
e-value: 1.2E-38
score: 144.4
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 103..152
e-value: 1.6E-13
score: 50.5
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 103..160
score: 24.605
IPR001471AP2/ERF domainCDDcd00018AP2coord: 102..160
e-value: 4.93176E-32
score: 111.98
IPR036955AP2/ERF domain superfamilyGENE3DG3DSA:3.30.730.10coord: 102..161
e-value: 3.4E-31
score: 108.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..185
NoneNo IPR availablePANTHERPTHR31190FAMILY NOT NAMEDcoord: 88..193
NoneNo IPR availablePANTHERPTHR31190:SF66ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABR1-RELATEDcoord: 88..193
IPR016177DNA-binding domain superfamilySUPERFAMILYSSF54171DNA-binding domaincoord: 103..161

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg22064Cla013063Watermelon (97103) v1carwmB0197
Carg22064Cla016009Watermelon (97103) v1carwmB0198
Carg22064Csa7G073700Cucumber (Chinese Long) v2carcuB0233
Carg22064Csa3G207390Cucumber (Chinese Long) v2carcuB0232
Carg22064MELO3C019506Melon (DHL92) v3.5.1carmeB0215
Carg22064MELO3C018447Melon (DHL92) v3.5.1carmeB0213
Carg22064ClCG05G009970Watermelon (Charleston Gray)carwcgB0204
Carg22064ClCG02G005910Watermelon (Charleston Gray)carwcgB0203
Carg22064CSPI07G07670Wild cucumber (PI 183967)carcpiB0239
Carg22064Cucsa.244290Cucumber (Gy14) v1carcgyB0253
Carg22064Cucsa.219890Cucumber (Gy14) v1carcgyB0251
Carg22064CmaCh19G006060Cucurbita maxima (Rimu)carcmaB0288
Carg22064CmaCh11G017540Cucurbita maxima (Rimu)carcmaB0287
Carg22064CmoCh19G006240Cucurbita moschata (Rifu)carcmoB0293
Carg22064CmoCh11G013590Cucurbita moschata (Rifu)carcmoB0292
Carg22064Lsi03G004900Bottle gourd (USVL1VR-Ls)carlsiB187
Carg22064Cp4.1LG04g08100Cucurbita pepo (Zucchini)carcpeB0296
Carg22064CsGy3G018410Cucumber (Gy14) v2carcgybB0221
Carg22064CsGy7G007230Cucumber (Gy14) v2carcgybB0222
Carg22064MELO3C019506.2Melon (DHL92) v3.6.1carmedB0220
Carg22064MELO3C018447.2Melon (DHL92) v3.6.1carmedB0218
Carg22064CsaV3_7G008630Cucumber (Chinese Long) v3carcucB0237
Carg22064CsaV3_3G018600Cucumber (Chinese Long) v3carcucB0236
Carg22064Cla97C01G015890Watermelon (97103) v2carwmbB0211
Carg22064Cla97C02G032880Watermelon (97103) v2carwmbB0212
Carg22064Cla97C05G092380Watermelon (97103) v2carwmbB0213
Carg22064Bhi01G001253Wax gourdcarwgoB0258
Carg22064Bhi05G000994Wax gourdcarwgoB0260
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg22064Carg08167Silver-seed gourdcarcarB244
Carg22064Carg26415Silver-seed gourdcarcarB246
The following block(s) are covering this gene:
GeneOrganismBlock
Carg22064Cucurbita pepo (Zucchini)carcpeB0295
Carg22064Bottle gourd (USVL1VR-Ls)carlsiB186