MELO3C018447 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018447
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ethylene-responsive transcription factor 10
Location	chr1 : 341707 .. 342027 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCTCCCCCCCCTTCCGCCGCATCACCGAAGAACAAGAACTCTCCGTCATGGTCGACGCTCTCACCCAAGTCGTTTCCGGGGCCTCCTCTTCCACCCTCTCATTCCACCACGACCATTTCCTCCGCCTCCTCTTCCCTCCTATTACCACCACCCCTCCCTTCTCCTCCTCTTCAGAATTCGACACATGTCCCCTCTGTAAAATCAACGGTTGCTTAGGCTGCCATTTCTTCTCCGCCCCCGACTCTACCACTACCACTACCGCCGCCACCCCCGCCGCCAAAACAACAACAACAACAATCCCGGCCGCCGCGTGA

mRNA sequence

ATGGCCTCCTCCCCCCCCTTCCGCCGCATCACCGAAGAACAAGAACTCTCCGTCATGGTCGACGCTCTCACCCAAGTCGTTTCCGGGGCCTCCTCTTCCACCCTCTCATTCCACCACGACCATTTCCTCCGCCTCCTCTTCCCTCCTATTACCACCACCCCTCCCTTCTCCTCCTCTTCAGAATTCGACACATGTCCCCTCTGTAAAATCAACGGTTGCTTAGGCTGCCATTTCTTCTCCGCCCCCGACTCTACCACTACCACTACCGCCGCCACCCCCGCCGCCAAAACAACAACAACAACAATCCCGGCCGCCGCGTGA

Coding sequence (CDS)

ATGGCCTCCTCCCCCCCCTTCCGCCGCATCACCGAAGAACAAGAACTCTCCGTCATGGTCGACGCTCTCACCCAAGTCGTTTCCGGGGCCTCCTCTTCCACCCTCTCATTCCACCACGACCATTTCCTCCGCCTCCTCTTCCCTCCTATTACCACCACCCCTCCCTTCTCCTCCTCTTCAGAATTCGACACATGTCCCCTCTGTAAAATCAACGGTTGCTTAGGCTGCCATTTCTTCTCCGCCCCCGACTCTACCACTACCACTACCGCCGCCACCCCCGCCGCCAAAACAACAACAACAACAATCCCGGCCGCCGCGTGA

Protein sequence

MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSSSSEFDTCPLCKINGCLGCHFFSAPDSTTTTTAATPAAKTTTTTIPAAA*

Homology

[Close]

BLAST of MELO3C018447 vs. TrEMBL
Match: A0A0A0K4S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073700 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.5e-38
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 1


Query: 4  SPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSSSSEFD 63
          SP FRRITEEQELSV+VDALTQVVSGA SS LSFHHDHFLR+LFPPI  TPPFSSSSEFD
Sbjct: 9  SPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPPFSSSSEFD 68

Query: 64 TCPLCKINGCLGCHFFSAPDSTTTTTA 91
          TCPLCKINGCLGCHFFSAP STTTTTA
Sbjct: 69 TCPLCKINGCLGCHFFSAPASTTTTTA 95

[Close]

BLAST of MELO3C018447 vs. TrEMBL
Match: A0A0C5AHM3_BETPL (ERF2 protein OS=Betula platyphylla GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 39/74 (52.70%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 9  RITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSSSSEFDTCPLC 68
          R+T EQELSVMV ALT VVSG +S+T S              T  PP    SE DTC +C
Sbjct: 8  RLTSEQELSVMVAALTNVVSGCTSTTASTSE------YCADATPLPP----SELDTCQVC 67

Query: 69 KINGCLGCHFFSAP 83
          KI+GCLGC+FF  P
Sbjct: 68 KIDGCLGCNFFFPP 71

[Close]

BLAST of MELO3C018447 vs. TrEMBL
Match: A0A067L1F6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01610 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 1


Query: 9  RITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPP------------------I 68
          ++T++QELS+MV AL  VVSG ++S+ +   D      FP                    
Sbjct: 5  QLTQDQELSIMVSALKNVVSGDATSSTTVASDFSQVRQFPSNGYGYSSSYSSAAVTGAVA 64

Query: 69 TTTPPFSSSSEFDTCPLCKINGCLGCHFF 80
          TTT  F ++S+ DTC +CKINGCLGC+FF
Sbjct: 65 TTTTSFYNASDLDTCSICKINGCLGCNFF 93

[Close]

BLAST of MELO3C018447 vs. TrEMBL
Match: A0A022RD85_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010618mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-08
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = 1


Query: 4   SPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHH---DHFLRLLFPPITTTPPFSSSS 63
           SPP  R+T E+E+S+MV AL  V++GA++    +     DHF R            S S 
Sbjct: 32  SPP--RLTSEEEVSIMVSALKNVITGAAAENAGYEFCGSDHFRRAA----AGGGFISVSD 91

Query: 64  EFDTCPLCKINGCLGCHFFSAPDSTTT-TTAATPAAKTTTTTIPAAA 107
           + +TC  C+INGCLGC+FF   ++ ++   +  P++  T   + AAA
Sbjct: 92  DLETCRFCRINGCLGCNFFDDQENKSSHNNSNAPSSAATPPPVAAAA 132

[Close]

BLAST of MELO3C018447 vs. TrEMBL
Match: B9HS08_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10470g PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-08
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = 1


Query: 3   SSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSS---- 62
           ++PP R +T+EQEL+VMV AL  VVSG +S   S   +    +  P IT+ P F S    
Sbjct: 23  AAPPLR-LTQEQELAVMVAALKNVVSGTASMDFSREMNS---INMPIITSHPQFGSASNN 82

Query: 63  -----------SSEFDTCPLCKINGCLGCHFF 80
                      SS+ DTC +CKI GCLGC+FF
Sbjct: 83  GNGFCNSILPPSSDLDTCGVCKIKGCLGCNFF 110

[Close]

BLAST of MELO3C018447 vs. TAIR10
Match: AT4G34410.1 (AT4G34410.1 redox responsive transcription factor 1)

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1


Query: 9  RITEEQELSVMVDALTQVVSGASSST--LSFHHDHFLRLLFPPITTTPPFSSSSEFDTCP 68
          +++ EQELSV+V AL  V+SG + +     F  D  +      I+   P   S   DTC 
Sbjct: 23 QLSPEQELSVIVSALQHVISGENETAPCQGFSSDSTV------ISAGMPRLDS---DTCQ 82

Query: 69 LCKINGCLGCHFFSAPD 84
          +C+I GCLGC++F AP+
Sbjct: 83 VCRIEGCLGCNYFFAPN 90

[Close]

BLAST of MELO3C018447 vs. NCBI nr
Match: gi|659109909|ref|XP_008454945.1| (PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 1.5e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSSSS 60
          MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSSSS
Sbjct: 3  MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSSSS 62

Query: 61 EFDTCPLCKINGCLGCHFFSAPDSTTTTTAATPAA 96
          EFDTCPLCKINGCLGCHFFSAPDSTTTTTAATPAA
Sbjct: 63 EFDTCPLCKINGCLGCHFFSAPDSTTTTTAATPAA 97

[Close]

BLAST of MELO3C018447 vs. NCBI nr
Match: gi|778725119|ref|XP_004137113.2| (PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 3.6e-38
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 1


Query: 4  SPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSSSSEFD 63
          SP FRRITEEQELSV+VDALTQVVSGA SS LSFHHDHFLR+LFPPI  TPPFSSSSEFD
Sbjct: 11 SPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPPFSSSSEFD 70

Query: 64 TCPLCKINGCLGCHFFSAPDSTTTTTA 91
          TCPLCKINGCLGCHFFSAP STTTTTA
Sbjct: 71 TCPLCKINGCLGCHFFSAPASTTTTTA 97

[Close]

BLAST of MELO3C018447 vs. NCBI nr
Match: gi|700188701|gb|KGN43934.1| (hypothetical protein Csa_7G073700 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 3.6e-38
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 1


Query: 4  SPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSSSSEFD 63
          SP FRRITEEQELSV+VDALTQVVSGA SS LSFHHDHFLR+LFPPI  TPPFSSSSEFD
Sbjct: 9  SPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPPFSSSSEFD 68

Query: 64 TCPLCKINGCLGCHFFSAPDSTTTTTA 91
          TCPLCKINGCLGCHFFSAP STTTTTA
Sbjct: 69 TCPLCKINGCLGCHFFSAPASTTTTTA 95

[Close]

BLAST of MELO3C018447 vs. NCBI nr
Match: gi|755257693|gb|AJK26922.1| (ethylene response factor protein 2 [Betula platyphylla])

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-09
Identity = 39/74 (52.70%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 9  RITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSSSSEFDTCPLC 68
          R+T EQELSVMV ALT VVSG +S+T S              T  PP    SE DTC +C
Sbjct: 8  RLTSEQELSVMVAALTNVVSGCTSTTASTSE------YCADATPLPP----SELDTCQVC 67

Query: 69 KINGCLGCHFFSAP 83
          KI+GCLGC+FF  P
Sbjct: 68 KIDGCLGCNFFFPP 71

[Close]

BLAST of MELO3C018447 vs. NCBI nr
Match: gi|643735778|gb|KDP42286.1| (hypothetical protein JCGZ_01610 [Jatropha curcas])

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-08
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 1


Query: 9  RITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPP------------------I 68
          ++T++QELS+MV AL  VVSG ++S+ +   D      FP                    
Sbjct: 5  QLTQDQELSIMVSALKNVVSGDATSSTTVASDFSQVRQFPSNGYGYSSSYSSAAVTGAVA 64

Query: 69 TTTPPFSSSSEFDTCPLCKINGCLGCHFF 80
          TTT  F ++S+ DTC +CKINGCLGC+FF
Sbjct: 65 TTTTSFYNASDLDTCSICKINGCLGCNFF 93

The following BLAST results are available for this feature:

BLAST of MELO3C018447 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4S2_CUCSA	2.5e-38	90.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073700 PE=4 SV=1	[more]
A0A0C5AHM3_BETPL	5.4e-09	52.70	ERF2 protein OS=Betula platyphylla GN=ERF2 PE=2 SV=1	[more]
A0A067L1F6_JATCU	2.1e-08	40.45	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01610 PE=4 SV=1	[more]
A0A022RD85_ERYGU	4.6e-08	35.51	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010618mg PE=4 SV=1	[more]
B9HS08_POPTR	6.0e-08	43.48	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10470g PE=4 SV=1	[more]

BLAST of MELO3C018447 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34410.1	1.0e-06	38.96	redox responsive transcription factor 1	[more]

BLAST of MELO3C018447 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109909\|ref\|XP_008454945.1\|	1.5e-47	100.00	PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis melo]	[more]
gi\|778725119\|ref\|XP_004137113.2\|	3.6e-38	90.80	PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis sativus...	[more]
gi\|700188701\|gb\|KGN43934.1\|	3.6e-38	90.80	hypothetical protein Csa_7G073700 [Cucumis sativus]	[more]
gi\|755257693\|gb\|AJK26922.1\|	7.8e-09	52.70	ethylene response factor protein 2 [Betula platyphylla]	[more]
gi\|643735778\|gb\|KDP42286.1\|	3.0e-08	40.45	hypothetical protein JCGZ_01610 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018447T1	MELO3C018447T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018447	Csa7G073700	Cucumber (Chinese Long) v2	cumeB530
MELO3C018447	Cla016009	Watermelon (97103) v1	mewmB240
MELO3C018447	ClCG02G005910	Watermelon (Charleston Gray)	mewcgB197
MELO3C018447	Cla97C02G032880	Watermelon (97103) v2	mewmbB180
MELO3C018447	Bhi05G000994	Wax gourd	mewgoB222
MELO3C018447	CSPI07G07670	Wild cucumber (PI 183967)	cpimeB538
MELO3C018447	Cucsa.219890	Cucumber (Gy14) v1	cgymeB379
MELO3C018447	CmaCh11G017540	Cucurbita maxima (Rimu)	cmameB098
MELO3C018447	CmoCh11G013590	Cucurbita moschata (Rifu)	cmomeB085
MELO3C018447	CmoCh19G006240	Cucurbita moschata (Rifu)	cmomeB454
MELO3C018447	Lsi03G004900	Bottle gourd (USVL1VR-Ls)	lsimeB247
MELO3C018447	CsGy7G007230	Cucumber (Gy14) v2	cgybmeB468
MELO3C018447	Carg22064	Silver-seed gourd	carmeB0213
MELO3C018447	Carg26415	Silver-seed gourd	carmeB0798
MELO3C018447	CsaV3_7G008630	Cucumber (Chinese Long) v3	cucmeB548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018447	Cucurbita maxima (Rimu)	cmameB463
MELO3C018447	Cucurbita maxima (Rimu)	cmameB672
MELO3C018447	Cucurbita moschata (Rifu)	cmomeB665
MELO3C018447	Wild cucumber (PI 183967)	cpimeB105
MELO3C018447	Cucumber (Chinese Long) v2	cumeB106
MELO3C018447	Cucumber (Chinese Long) v2	cumeB195
MELO3C018447	Cucumber (Chinese Long) v2	cumeB281
MELO3C018447	Watermelon (Charleston Gray)	mewcgB209
MELO3C018447	Watermelon (Charleston Gray)	mewcgB223
MELO3C018447	Watermelon (97103) v1	mewmB218
MELO3C018447	Watermelon (97103) v1	mewmB231
MELO3C018447	Cucurbita pepo (Zucchini)	cpemeB182
MELO3C018447	Cucurbita pepo (Zucchini)	cpemeB225
MELO3C018447	Cucurbita pepo (Zucchini)	cpemeB394
MELO3C018447	Cucurbita pepo (Zucchini)	cpemeB604
MELO3C018447	Bottle gourd (USVL1VR-Ls)	lsimeB346
MELO3C018447	Bottle gourd (USVL1VR-Ls)	lsimeB466
MELO3C018447	Cucumber (Gy14) v2	cgybmeB090
MELO3C018447	Cucumber (Gy14) v2	cgybmeB160
MELO3C018447	Cucumber (Chinese Long) v3	cucmeB189
MELO3C018447	Cucumber (Chinese Long) v3	cucmeB276
MELO3C018447	Watermelon (97103) v2	mewmbB192
MELO3C018447	Watermelon (97103) v2	mewmbB206
MELO3C018447	Wax gourd	mewgoB207
MELO3C018447	Wax gourd	mewgoB228
MELO3C018447	Melon (DHL92) v3.5.1	memeB090
MELO3C018447	Melon (DHL92) v3.5.1	memeB079
MELO3C018447	Melon (DHL92) v3.5.1	memeB098
MELO3C018447	Cucumber (Gy14) v1	cgymeB416