MELO3C018447.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018447.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ethylene-responsive transcription factor ERF109-like
Location	chr01 : 341480 .. 341800 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCTCCCCCCCCTTCCGCCGCATCACCGAAGAACAAGAACTCTCCGTCATGGTCGACGCTCTCACCCAAGTCGTTTCCGGGGCCTCCTCTTCCACCCTCTCATTCCACCACGACCATTTCCTCCGCCTCCTCTTCCCTCCTATTACCACCACCCCTCCCTTCTCCTCCTCTTCAGAATTCGACACATGTCCCCTCTGTAAAATCAACGGTTGCTTAGGCTGCCATTTCTTCTCCGCCCCCGACTCTACCACTACCACTACCGCCGCCACCCCCGCCGCCAAAACAACAACAACAACAATCCCGGCCGCCGCGTGA

mRNA sequence

ATGGCCTCCTCCCCCCCCTTCCGCCGCATCACCGAAGAACAAGAACTCTCCGTCATGGTCGACGCTCTCACCCAAGTCGTTTCCGGGGCCTCCTCTTCCACCCTCTCATTCCACCACGACCATTTCCTCCGCCTCCTCTTCCCTCCTATTACCACCACCCCTCCCTTCTCCTCCTCTTCAGAATTCGACACATGTCCCCTCTGTAAAATCAACGGTTGCTTAGGCTGCCATTTCTTCTCCGCCCCCGACTCTACCACTACCACTACCGCCGCCACCCCCGCCGCCAAAACAACAACAACAACAATCCCGGCCGCCGCGTGA

Coding sequence (CDS)

ATGGCCTCCTCCCCCCCCTTCCGCCGCATCACCGAAGAACAAGAACTCTCCGTCATGGTCGACGCTCTCACCCAAGTCGTTTCCGGGGCCTCCTCTTCCACCCTCTCATTCCACCACGACCATTTCCTCCGCCTCCTCTTCCCTCCTATTACCACCACCCCTCCCTTCTCCTCCTCTTCAGAATTCGACACATGTCCCCTCTGTAAAATCAACGGTTGCTTAGGCTGCCATTTCTTCTCCGCCCCCGACTCTACCACTACCACTACCGCCGCCACCCCCGCCGCCAAAACAACAACAACAACAATCCCGGCCGCCGCGTGA

Protein sequence

MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPPFSSSSEFDTCPLCKINGCLGCHFFSAPDSTTTTTAATPAAKTTTTTIPAAA

Homology

[Close]

BLAST of MELO3C018447.2 vs. NCBI nr
Match: XP_008454945.1 (PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-34
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITXXXXFSSSS 60
          MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPI XXXXFSSSS
Sbjct: 3  MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPIXXXXXFSSSS 62

Query: 61 EFDTCPLCKINGCLGCHFFS 81
          EFDTCPLCKINGCLGCHFFS
Sbjct: 63 EFDTCPLCKINGCLGCHFFS 82

[Close]

BLAST of MELO3C018447.2 vs. NCBI nr
Match: KGN43934.1 (hypothetical protein Csa_7G073700 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 4  SPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITXXXXFSSSSEFD 63
          SP FRRITEEQELSV+VDALTQVVSGA SS LSFHHDHFLR+LFPPI     FSSSSEFD
Sbjct: 9  SPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPPFSSSSEFD 68

Query: 64 TCPLCKINGCLGCHFFS 81
          TCPLCKINGCLGCHFFS
Sbjct: 69 TCPLCKINGCLGCHFFS 85

[Close]

BLAST of MELO3C018447.2 vs. NCBI nr
Match: XP_004137113.2 (PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 4  SPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITXXXXFSSSSEFD 63
          SP FRRITEEQELSV+VDALTQVVSGA SS LSFHHDHFLR+LFPPI     FSSSSEFD
Sbjct: 11 SPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPPFSSSSEFD 70

Query: 64 TCPLCKINGCLGCHFFS 81
          TCPLCKINGCLGCHFFS
Sbjct: 71 TCPLCKINGCLGCHFFS 87

[Close]

BLAST of MELO3C018447.2 vs. NCBI nr
Match: AUB30293.1 (ethylene-responsive transcription factor [Luffa aegyptiaca])

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 6  PFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITXXXXFSSSSEFDTC 65
          PFRRIT+EQELSV+VDALTQVVSG ++  L F HD FLRLL P       F  SS+FDTC
Sbjct: 10 PFRRITDEQELSVIVDALTQVVSGPAADGLEFQHDRFLRLLLPSANDAAVFPPSSDFDTC 69

Query: 66 PLCKINGCLGCHFFS 81
           +C+I+GCLGC+FFS
Sbjct: 70 HVCRISGCLGCNFFS 84

[Close]

BLAST of MELO3C018447.2 vs. NCBI nr
Match: XP_022952769.1 (ethylene-responsive transcription factor ERF109-like [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 4.7e-18
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 7  FRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFL-RLLFPPIT--XXXXFSSSSEFD 66
          FR ITEEQE+S++VDALT V+SGA++S L F HD FL RLL PP T      FS SS+FD
Sbjct: 9  FRSITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAFSGSSDFD 68

Query: 67 TCPLCKINGCLGCHFFS 81
          TC  C+INGCLGCHFFS
Sbjct: 69 TCQDCRINGCLGCHFFS 85

[Close]

BLAST of MELO3C018447.2 vs. TAIR10
Match: AT4G34410.1 (redox responsive transcription factor 1)

HSP 1 Score: 44.3 bits (103), Expect = 5.5e-05
Identity = 26/73 (35.62%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 9  RITEEQELSVMVDALTQVVSGASSST--LSFHHDHFLRLLFPPITXXXXFSSSSEFDTCP 68
          +++ EQELSV+V AL  V+SG + +     F  D          T         + DTC 
Sbjct: 23 QLSPEQELSVIVSALQHVISGENETAPCQGFSSDS---------TVISAGMPRLDSDTCQ 82

Query: 69 LCKINGCLGCHFF 80
          +C+I GCLGC++F
Sbjct: 83 VCRIEGCLGCNYF 86

[Close]

BLAST of MELO3C018447.2 vs. Swiss-Prot
Match: sp|Q9SZ06|EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana OX=3702 GN=ERF109 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.9e-04
Identity = 26/73 (35.62%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 9  RITEEQELSVMVDALTQVVSGASSST--LSFHHDHFLRLLFPPITXXXXFSSSSEFDTCP 68
          +++ EQELSV+V AL  V+SG + +     F  D          T         + DTC 
Sbjct: 23 QLSPEQELSVIVSALQHVISGENETAPCQGFSSDS---------TVISAGMPRLDSDTCQ 82

Query: 69 LCKINGCLGCHFF 80
          +C+I GCLGC++F
Sbjct: 83 VCRIEGCLGCNYF 86

[Close]

BLAST of MELO3C018447.2 vs. TrEMBL
Match: tr|A0A1S3BZ96|A0A1S3BZ96_CUCME (ethylene-responsive transcription factor ERF109-like OS=Cucumis melo OX=3656 GN=LOC103495234 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITXXXXFSSSS 60
          MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPI XXXXFSSSS
Sbjct: 3  MASSPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPIXXXXXFSSSS 62

Query: 61 EFDTCPLCKINGCLGCHFFS 81
          EFDTCPLCKINGCLGCHFFS
Sbjct: 63 EFDTCPLCKINGCLGCHFFS 82

[Close]

BLAST of MELO3C018447.2 vs. TrEMBL
Match: tr|A0A0A0K4S2|A0A0A0K4S2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073700 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 4  SPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITXXXXFSSSSEFD 63
          SP FRRITEEQELSV+VDALTQVVSGA SS LSFHHDHFLR+LFPPI     FSSSSEFD
Sbjct: 9  SPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPPFSSSSEFD 68

Query: 64 TCPLCKINGCLGCHFFS 81
          TCPLCKINGCLGCHFFS
Sbjct: 69 TCPLCKINGCLGCHFFS 85

[Close]

BLAST of MELO3C018447.2 vs. TrEMBL
Match: tr|A0A2H4V3T2|A0A2H4V3T2_LUFAE (Ethylene-responsive transcription factor OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 6  PFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITXXXXFSSSSEFDTC 65
          PFRRIT+EQELSV+VDALTQVVSG ++  L F HD FLRLL P       F  SS+FDTC
Sbjct: 10 PFRRITDEQELSVIVDALTQVVSGPAADGLEFQHDRFLRLLLPSANDAAVFPPSSDFDTC 69

Query: 66 PLCKINGCLGCHFFS 81
           +C+I+GCLGC+FFS
Sbjct: 70 HVCRISGCLGCNFFS 84

[Close]

BLAST of MELO3C018447.2 vs. TrEMBL
Match: tr|A0A0C5AHM3|A0A0C5AHM3_BETPL (ERF2 protein OS=Betula platyphylla OX=78630 GN=ERF2 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 37/71 (52.11%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 9  RITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITXXXXFSSSSEFDTCPLC 68
          R+T EQELSVMV ALT VVSG +S+T S           PP          SE DTC +C
Sbjct: 8  RLTSEQELSVMVAALTNVVSGCTSTTASTSEYCADATPLPP----------SELDTCQVC 67

Query: 69 KINGCLGCHFF 80
          KI+GCLGC+FF
Sbjct: 68 KIDGCLGCNFF 68

[Close]

BLAST of MELO3C018447.2 vs. TrEMBL
Match: tr|A0A067L1F6|A0A067L1F6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01610 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 9  RITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPP------------------I 68
          ++T++QELS+MV AL  VVSG ++S+ +   D      FP                    
Sbjct: 5  QLTQDQELSIMVSALKNVVSGDATSSTTVASDFSQVRQFPSNGYGYSSSYSSAAVTGAVA 64

Query: 69 TXXXXFSSSSEFDTCPLCKINGCLGCHFF 80
          T    F ++S+ DTC +CKINGCLGC+FF
Sbjct: 65 TTTTSFYNASDLDTCSICKINGCLGCNFF 93

The following BLAST results are available for this feature:

BLAST of MELO3C018447.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454945.1	2.1e-34	98.75	PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis melo]	[more]
KGN43934.1	3.1e-30	87.01	hypothetical protein Csa_7G073700 [Cucumis sativus]	[more]
XP_004137113.2	3.1e-30	87.01	PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis sativus...	[more]
AUB30293.1	2.5e-19	65.33	ethylene-responsive transcription factor [Luffa aegyptiaca]	[more]
XP_022952769.1	4.7e-18	66.23	ethylene-responsive transcription factor ERF109-like [Cucurbita moschata]	[more]

BLAST of MELO3C018447.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34410.1	5.5e-05	35.62	redox responsive transcription factor 1	[more]

BLAST of MELO3C018447.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZ06\|EF109_ARATH	9.9e-04	35.62	Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MELO3C018447.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZ96\|A0A1S3BZ96_CUCME	1.4e-34	98.75	ethylene-responsive transcription factor ERF109-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0K4S2\|A0A0A0K4S2_CUCSA	2.1e-30	87.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073700 PE=4 SV=1	[more]
tr\|A0A2H4V3T2\|A0A2H4V3T2_LUFAE	1.6e-19	65.33	Ethylene-responsive transcription factor OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
tr\|A0A0C5AHM3\|A0A0C5AHM3_BETPL	1.9e-07	52.11	ERF2 protein OS=Betula platyphylla OX=78630 GN=ERF2 PE=2 SV=1	[more]
tr\|A0A067L1F6\|A0A067L1F6_JATCU	2.1e-06	38.20	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01610 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018447.2.1	MELO3C018447.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..106

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018447.2	Csa7G073700	Cucumber (Chinese Long) v2	cumedB509
MELO3C018447.2	CSPI07G07670	Wild cucumber (PI 183967)	cpimedB523
MELO3C018447.2	Cucsa.219890	Cucumber (Gy14) v1	cgymedB377
MELO3C018447.2	CmaCh11G017540	Cucurbita maxima (Rimu)	cmamedB106
MELO3C018447.2	CmaCh19G006060	Cucurbita maxima (Rimu)	cmamedB535
MELO3C018447.2	CmoCh11G013590	Cucurbita moschata (Rifu)	cmomedB091
MELO3C018447.2	CmoCh19G006240	Cucurbita moschata (Rifu)	cmomedB523
MELO3C018447.2	Lsi03G004900	Bottle gourd (USVL1VR-Ls)	lsimedB260
MELO3C018447.2	Cp4.1LG04g08100	Cucurbita pepo (Zucchini)	cpemedB715
MELO3C018447.2	CsGy7G007230	Cucumber (Gy14) v2	cgybmedB465
MELO3C018447.2	Cla016009	Watermelon (97103) v1	medwmB232
MELO3C018447.2	ClCG02G005910	Watermelon (Charleston Gray)	medwcgB192
MELO3C018447.2	Cla97C02G032880	Watermelon (97103) v2	medwmbB166
MELO3C018447.2	Bhi05G000994	Wax gourd	medwgoB222
MELO3C018447.2	Carg26415	Silver-seed gourd	carmedB0810
MELO3C018447.2	Carg22064	Silver-seed gourd	carmedB0218
MELO3C018447.2	CsaV3_7G008630	Cucumber (Chinese Long) v3	cucmedB536

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018447.2	Watermelon (97103) v2	medwmbB178
MELO3C018447.2	Watermelon (97103) v2	medwmbB190
MELO3C018447.2	Wax gourd	medwgoB208
MELO3C018447.2	Wax gourd	medwgoB228
MELO3C018447.2	Cucumber (Gy14) v2	cgybmedB087
MELO3C018447.2	Cucumber (Gy14) v2	cgybmedB160
MELO3C018447.2	Cucumber (Gy14) v1	cgymedB411
MELO3C018447.2	Cucurbita maxima (Rimu)	cmamedB464
MELO3C018447.2	Cucurbita maxima (Rimu)	cmamedB754
MELO3C018447.2	Cucurbita moschata (Rifu)	cmomedB452
MELO3C018447.2	Cucurbita moschata (Rifu)	cmomedB751
MELO3C018447.2	Cucurbita pepo (Zucchini)	cpemedB263
MELO3C018447.2	Cucurbita pepo (Zucchini)	cpemedB457
MELO3C018447.2	Cucurbita pepo (Zucchini)	cpemedB883
MELO3C018447.2	Wild cucumber (PI 183967)	cpimedB100
MELO3C018447.2	Cucumber (Chinese Long) v2	cumedB100
MELO3C018447.2	Cucumber (Chinese Long) v2	cumedB181
MELO3C018447.2	Cucumber (Chinese Long) v2	cumedB266
MELO3C018447.2	Melon (DHL92) v3.6.1	medmedB080
MELO3C018447.2	Melon (DHL92) v3.6.1	medmedB098
MELO3C018447.2	Bottle gourd (USVL1VR-Ls)	lsimedB363
MELO3C018447.2	Bottle gourd (USVL1VR-Ls)	lsimedB485
MELO3C018447.2	Watermelon (Charleston Gray)	medwcgB214
MELO3C018447.2	Watermelon (Charleston Gray)	medwcgB203
MELO3C018447.2	Watermelon (97103) v1	medwmB215
MELO3C018447.2	Watermelon (97103) v1	medwmB226
MELO3C018447.2	Cucumber (Chinese Long) v3	cucmedB181
MELO3C018447.2	Cucumber (Chinese Long) v3	cucmedB269