Cp4.1LG04g08100 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG04g08100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 3434947 .. 3435720 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTATGGCCTCCCACCACCACTCCGCCGCCTTCCCCCGCCTCACCGACGAGCAGGAAGGCCTCGTTATTGTCGACGCTCTCACCCAAGTCGTCTCCGGCGCTGCAGCCGCCGGCCTCGAATTCCGACACGACCACTTCCTCCGCCTTCTTCACCCACCTTCCACTATCTTTCCGCCCTCTTCTGATTTTGACACGTGTCACATCTGTAGAATCAGCGGCTGTTTGGGTTGCAACTTCTTCTCAACCCCCTCCTCCCACCAGCCCACCACCACTACCACCGATAAAAACAACAACTCCGGCCGCCGTGTCAGGCGATTGAAGAAGAATTACAGAGGTGTCCGGCAACGTCCATGGGGCAAATGGGCCGCCGAAATCCGTGACCCGAAACGCGCCGCCCGAGTCTGGCTTGGCACCTTCAACACTGCTGAGGAAGCCGCACGTGCCTACGATGAAGCCGCCATTAAGTTCCGAGGCCCACGTGCCAGACTCAACTTCCCCTCCTCTGACAATTCCTTAACGACATTCAATTATTCTCCCCCGGCAGCCTCCACTACTACCTCCACCTCCGCCACAGTCACCGCCGCCCCTGCCACCGCCACCGCCGCCGCCGCCACTTCTAATTTGAACCGAAATGAAGCAGCTGTAGCACCGAGGACACCGTCATCAATGATGGAGATTCAAAACAACGTCGTTTTGGCTGAAATATTCGAAGACGACGACGACATTAAGAGTTTGATTATGGATTTCGCCGGTCAATCCCGGAGCCGGTGA

mRNA sequence

ATGCTTATGGCCTCCCACCACCACTCCGCCGCCTTCCCCCGCCTCACCGACGAGCAGGAAGGCCTCGTTATTGTCGACGCTCTCACCCAAGTCGTCTCCGGCGCTGCAGCCGCCGGCCTCGAATTCCGACACGACCACTTCCTCCGCCTTCTTCACCCACCTTCCACTATCTTTCCGCCCTCTTCTGATTTTGACACGTTCACCGCCGCCCCTGCCACCGCCACCGCCGCCGCCGCCACTTCTAATTTGAACCGAAATGAAGCAGCTGTAGCACCGAGGACACCGTCATCAATGATGGAGATTCAAAACAACGTCGTTTTGGCTGAAATATTCGAAGACGACGACGACATTAAGAGTTTGATTATGGATTTCGCCGGTCAATCCCGGAGCCGGTGA

Coding sequence (CDS)

ATGCTTATGGCCTCCCACCACCACTCCGCCGCCTTCCCCCGCCTCACCGACGAGCAGGAAGGCCTCGTTATTGTCGACGCTCTCACCCAAGTCGTCTCCGGCGCTGCAGCCGCCGGCCTCGAATTCCGACACGACCACTTCCTCCGCCTTCTTCACCCACCTTCCACTATCTTTCCGCCCTCTTCTGATTTTGACACGTTCACCGCCGCCCCTGCCACCGCCACCGCCGCCGCCGCCACTTCTAATTTGAACCGAAATGAAGCAGCTGTAGCACCGAGGACACCGTCATCAATGATGGAGATTCAAAACAACGTCGTTTTGGCTGAAATATTCGAAGACGACGACGACATTAAGAGTTTGATTATGGATTTCGCCGGTCAATCCCGGAGCCGGTGA

Protein sequence

MLMASHHHSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFLRLLHPPSTIFPPSSDFDTFTAAPATATAAAATSNLNRNEAAVAPRTPSSMMEIQNNVVLAEIFEDDDDIKSLIMDFAGQSRSR
BLAST of Cp4.1LG04g08100 vs. TrEMBL
Match: A0A0A0K4S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073700 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 51/103 (49.51%), Postives = 60/103 (58.25%), Query Frame = 1

Query: 3   MASHH--HSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFLRLLHPPSTIFPP 62
           MAS H   S AF R+T+EQE  VIVDALTQVVSGA ++ L F HDHFLR+L PP    PP
Sbjct: 1   MASDHPPFSPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPP 60

Query: 63  ---SSDFDT--------------FTAAPATATAAAATSNLNRN 87
              SS+FDT              F+A  +T T  A  +N N N
Sbjct: 61  FSSSSEFDTCPLCKINGCLGCHFFSAPASTTTTTANAANKNNN 103

BLAST of Cp4.1LG04g08100 vs. NCBI nr
Match: gi|778725119|ref|XP_004137113.2| (PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12
Identity = 53/105 (50.48%), Postives = 62/105 (59.05%), Query Frame = 1

Query: 1   MLMASHH--HSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFLRLLHPPSTIF 60
           MLMAS H   S AF R+T+EQE  VIVDALTQVVSGA ++ L F HDHFLR+L PP    
Sbjct: 1   MLMASDHPPFSPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPT 60

Query: 61  PP---SSDFDT--------------FTAAPATATAAAATSNLNRN 87
           PP   SS+FDT              F+A  +T T  A  +N N N
Sbjct: 61  PPFSSSSEFDTCPLCKINGCLGCHFFSAPASTTTTTANAANKNNN 105

BLAST of Cp4.1LG04g08100 vs. NCBI nr
Match: gi|659109909|ref|XP_008454945.1| (PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-12
Identity = 53/103 (51.46%), Postives = 62/103 (60.19%), Query Frame = 1

Query: 1   MLMASHHHSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFLRLLHPPSTIFPP 60
           MLMAS   S  F R+T+EQE  V+VDALTQVVSGA+++ L F HDHFLRLL PP T  PP
Sbjct: 1   MLMAS---SPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPP 60

Query: 61  ---SSDFDT--------------FTAAPATATAAAATSNLNRN 87
              SS+FDT              F+A  +T T  AAT   N N
Sbjct: 61  FSSSSEFDTCPLCKINGCLGCHFFSAPDSTTTTTAATPAANNN 100

BLAST of Cp4.1LG04g08100 vs. NCBI nr
Match: gi|700188701|gb|KGN43934.1| (hypothetical protein Csa_7G073700 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 51/103 (49.51%), Postives = 60/103 (58.25%), Query Frame = 1

Query: 3   MASHH--HSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFLRLLHPPSTIFPP 62
           MAS H   S AF R+T+EQE  VIVDALTQVVSGA ++ L F HDHFLR+L PP    PP
Sbjct: 1   MASDHPPFSPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPP 60

Query: 63  ---SSDFDT--------------FTAAPATATAAAATSNLNRN 87
              SS+FDT              F+A  +T T  A  +N N N
Sbjct: 61  FSSSSEFDTCPLCKINGCLGCHFFSAPASTTTTTANAANKNNN 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K4S2_CUCSA1.9e-1149.51Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778725119|ref|XP_004137113.2|2.4e-1250.48PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis sativus... [more]
gi|659109909|ref|XP_008454945.1|4.1e-1251.46PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis melo][more]
gi|700188701|gb|KGN43934.1|2.7e-1149.51hypothetical protein Csa_7G073700 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g08100.1Cp4.1LG04g08100.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g08100Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g08100Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g08100Cucurbita pepo (Zucchini)cpecpeB417
Cp4.1LG04g08100Cucurbita pepo (Zucchini)cpecpeB500
Cp4.1LG04g08100Cucumber (Gy14) v1cgycpeB0222
Cp4.1LG04g08100Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g08100Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g08100Cucurbita maxima (Rimu)cmacpeB884
Cp4.1LG04g08100Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g08100Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g08100Cucurbita moschata (Rifu)cmocpeB822
Cp4.1LG04g08100Wild cucumber (PI 183967)cpecpiB689
Cp4.1LG04g08100Cucumber (Chinese Long) v2cpecuB686
Cp4.1LG04g08100Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g08100Bottle gourd (USVL1VR-Ls)cpelsiB536
Cp4.1LG04g08100Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g08100Watermelon (Charleston Gray)cpewcgB588
Cp4.1LG04g08100Watermelon (Charleston Gray)cpewcgB611
Cp4.1LG04g08100Watermelon (Charleston Gray)cpewcgB624
Cp4.1LG04g08100Watermelon (97103) v1cpewmB656
Cp4.1LG04g08100Watermelon (97103) v1cpewmB663
Cp4.1LG04g08100Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g08100Melon (DHL92) v3.5.1cpemeB644
Cp4.1LG04g08100Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g08100Melon (DHL92) v3.6.1cpemedB746
Cp4.1LG04g08100Melon (DHL92) v3.6.1cpemedB772
Cp4.1LG04g08100Silver-seed gourdcarcpeB0529
Cp4.1LG04g08100Cucumber (Chinese Long) v3cpecucB0857
Cp4.1LG04g08100Wax gourdcpewgoB0841
Cp4.1LG04g08100Wax gourdcpewgoB0860