Cp4.1LG04g08100.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g08100.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 3434947 .. 3435720 (-)
Sequence length396
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTATGGCCTCCCACCACCACTCCGCCGCCTTCCCCCGCCTCACCGACGAGCAGGAAGGCCTCGTTATTGTCGACGCTCTCACCCAAGTCGTCTCCGGCGCTGCAGCCGCCGGCCTCGAATTCCGACACGACCACTTCCTCCGCCTTCTTCACCCACCTTCCACTATCTTTCCGCCCTCTTCTGATTTTGACACGTGTCACATCTGTAGAATCAGCGGCTGTTTGGGTTGCAACTTCTTCTCAACCCCCTCCTCCCACCAGCCCACCACCACTACCACCGATAAAAACAACAACTCCGGCCGCCGTGTCAGGCGATTGAAGAAGAATTACAGAGGTGTCCGGCAACGTCCATGGGGCAAATGGGCCGCCGAAATCCGTGACCCGAAACGCGCCGCCCGAGTCTGGCTTGGCACCTTCAACACTGCTGAGGAAGCCGCACGTGCCTACGATGAAGCCGCCATTAAGTTCCGAGGCCCACGTGCCAGACTCAACTTCCCCTCCTCTGACAATTCCTTAACGACATTCAATTATTCTCCCCCGGCAGCCTCCACTACTACCTCCACCTCCGCCACAGTCACCGCCGCCCCTGCCACCGCCACCGCCGCCGCCGCCACTTCTAATTTGAACCGAAATGAAGCAGCTGTAGCACCGAGGACACCGTCATCAATGATGGAGATTCAAAACAACGTCGTTTTGGCTGAAATATTCGAAGACGACGACGACATTAAGAGTTTGATTATGGATTTCGCCGGTCAATCCCGGAGCCGGTGA

mRNA sequence

ATGCTTATGGCCTCCCACCACCACTCCGCCGCCTTCCCCCGCCTCACCGACGAGCAGGAAGGCCTCGTTATTGTCGACGCTCTCACCCAAGTCGTCTCCGGCGCTGCAGCCGCCGGCCTCGAATTCCGACACGACCACTTCCTCCGCCTTCTTCACCCACCTTCCACTATCTTTCCGCCCTCTTCTGATTTTGACACGTTCACCGCCGCCCCTGCCACCGCCACCGCCGCCGCCGCCACTTCTAATTTGAACCGAAATGAAGCAGCTGTAGCACCGAGGACACCGTCATCAATGATGGAGATTCAAAACAACGTCGTTTTGGCTGAAATATTCGAAGACGACGACGACATTAAGAGTTTGATTATGGATTTCGCCGGTCAATCCCGGAGCCGGTGA

Coding sequence (CDS)

ATGCTTATGGCCTCCCACCACCACTCCGCCGCCTTCCCCCGCCTCACCGACGAGCAGGAAGGCCTCGTTATTGTCGACGCTCTCACCCAAGTCGTCTCCGGCGCTGCAGCCGCCGGCCTCGAATTCCGACACGACCACTTCCTCCGCCTTCTTCACCCACCTTCCACTATCTTTCCGCCCTCTTCTGATTTTGACACGTTCACCGCCGCCCCTGCCACCGCCACCGCCGCCGCCGCCACTTCTAATTTGAACCGAAATGAAGCAGCTGTAGCACCGAGGACACCGTCATCAATGATGGAGATTCAAAACAACGTCGTTTTGGCTGAAATATTCGAAGACGACGACGACATTAAGAGTTTGATTATGGATTTCGCCGGTCAATCCCGGAGCCGGTGA

Protein sequence

MLMASHHHSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFLRLLHPPSTIFPPSSDFDTFTAAPATATAAAATSNLNRNEAAVAPRTPSSMMEIQNNVVLAEIFEDDDDIKSLIMDFAGQSRSR
Homology
[Close]
BLAST of Cp4.1LG04g08100.1 vs. TrEMBL
Match: A0A0A0K4S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073700 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 51/103 (49.51%), Postives = 60/103 (58.25%), Query Frame = 1 

Query: 3   MASHH--HSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFLRLLHPPSTIFPP 62
           MAS H   S AF R+T+EQE  VIVDALTQVVSGA ++ L F HDHFLR+L PP    PP
Sbjct: 1   MASDHPPFSPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPP 60

Query: 63  ---SSDFDT--------------FTAAPATATAAAATSNLNRN 87
              SS+FDT              F+A  +T T  A  +N N N
Sbjct: 61  FSSSSEFDTCPLCKINGCLGCHFFSAPASTTTTTANAANKNNN 103

[Close]
BLAST of Cp4.1LG04g08100.1 vs. NCBI nr
Match: gi|778725119|ref|XP_004137113.2| (PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12
Identity = 53/105 (50.48%), Postives = 62/105 (59.05%), Query Frame = 1 

Query: 1   MLMASHH--HSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFLRLLHPPSTIF 60
           MLMAS H   S AF R+T+EQE  VIVDALTQVVSGA ++ L F HDHFLR+L PP    
Sbjct: 1   MLMASDHPPFSPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPT 60

Query: 61  PP---SSDFDT--------------FTAAPATATAAAATSNLNRN 87
           PP   SS+FDT              F+A  +T T  A  +N N N
Sbjct: 61  PPFSSSSEFDTCPLCKINGCLGCHFFSAPASTTTTTANAANKNNN 105

[Close]
BLAST of Cp4.1LG04g08100.1 vs. NCBI nr
Match: gi|659109909|ref|XP_008454945.1| (PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-12
Identity = 53/103 (51.46%), Postives = 62/103 (60.19%), Query Frame = 1 

Query: 1   MLMASHHHSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFLRLLHPPSTIFPP 60
           MLMAS   S  F R+T+EQE  V+VDALTQVVSGA+++ L F HDHFLRLL PP T  PP
Sbjct: 1   MLMAS---SPPFRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFLRLLFPPITTTPP 60

Query: 61  ---SSDFDT--------------FTAAPATATAAAATSNLNRN 87
              SS+FDT              F+A  +T T  AAT   N N
Sbjct: 61  FSSSSEFDTCPLCKINGCLGCHFFSAPDSTTTTTAATPAANNN 100

[Close]
BLAST of Cp4.1LG04g08100.1 vs. NCBI nr
Match: gi|700188701|gb|KGN43934.1| (hypothetical protein Csa_7G073700 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 51/103 (49.51%), Postives = 60/103 (58.25%), Query Frame = 1 

Query: 3   MASHH--HSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFLRLLHPPSTIFPP 62
           MAS H   S AF R+T+EQE  VIVDALTQVVSGA ++ L F HDHFLR+L PP    PP
Sbjct: 1   MASDHPPFSPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPP 60

Query: 63  ---SSDFDT--------------FTAAPATATAAAATSNLNRN 87
              SS+FDT              F+A  +T T  A  +N N N
Sbjct: 61  FSSSSEFDTCPLCKINGCLGCHFFSAPASTTTTTANAANKNNN 103

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g08100.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g08100.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4S2_CUCSA1.9e-1149.51Uncharacterized protein OS=Cucumis sativus GN=Csa_7G073700 PE=4 SV=1[more]
BLAST of Cp4.1LG04g08100.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g08100.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778725119|ref|XP_004137113.2|2.4e-1250.48PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis sativus... [more]
gi|659109909|ref|XP_008454945.1|4.1e-1251.46PREDICTED: ethylene-responsive transcription factor ERF109-like [Cucumis melo][more]
gi|700188701|gb|KGN43934.1|2.7e-1149.51hypothetical protein Csa_7G073700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG04g08100Cp4.1LG04g08100gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g08100.1:cds:001Cp4.1LG04g08100.1:cds:001CDS
Cp4.1LG04g08100.1:cds:002Cp4.1LG04g08100.1:cds:002CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG04g08100.1Cp4.1LG04g08100.1-proteinpolypeptide