Carg22064-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22064-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ethylene-responsive transcription factor
Location	Cucurbita_argyrosperma_scaffold_175 : 427307 .. 427984 (-)
Sequence length	678

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCCTACCGCCCCGCCGTCTTCCGCCGCATCACCGAGGAGCAGGAGGTCTCTATCATTGTCGACGCCCTCACCCACGTCATCTCCGGCGCCGCTGCTTCCGGTCTCGAGTTCCGCCACGACGATTTCCTCCGCCGCCTCCTCCTCCCGCCTTCTACTGACAATACCGCCGCCGCCTTCTCGGGTTCTTCAGATTTCGACACGTGTCAAGCCTGCAGAATCAACGGCTGCTTGGGCTGCCACTTCTTCTCCGCCCCCTCCTCCTCCTCCTCCTCCACCCGCCGTATCAGACGCCTGAAGAAGAATTACAGAGGCGTCCGCCTGCGCCCTTGGGGCAAATGGGCCGCCGAGATCCGCGACCCGAAACGTGCGACGCGAGTCTGGCTTGGTACCTTCAACACCGCCGAGGACGCCGCACGTGCCTACGATGAAGCCGCCATTAAATTCCGCGGCGCACGTGCCAAACTCAATTTCCCCCTCCCTGGCAATTCATCAACGACTTCCACAACCACCTCCGCCGTCAATGAATCGGCAGTAGCTCCAAGAACATCGCCGATGAAAATGGAGACGAAAAACTACACCTTACCCGAGATTTTCAAGGTCGATGACGACGACGACGACAACGACGACATTCAACGATTGATCAATGACTTTGCAGGCCATTCACGAAGCTAA

mRNA sequence

ATGTCATCCTACCGCCCCGCCGTCTTCCGCCGCATCACCGAGGAGCAGGAGGTCTCTATCATTGTCGACGCCCTCACCCACGTCATCTCCGGCGCCGCTGCTTCCGGTCTCGAGTTCCGCCACGACGATTTCCTCCGCCGCCTCCTCCTCCCGCCTTCTACTGACAATACCGCCGCCGCCTTCTCGGGTTCTTCAGATTTCGACACGTGTCAAGCCTGCAGAATCAACGGCTGCTTGGGCTGCCACTTCTTCTCCGCCCCCTCCTCCTCCTCCTCCTCCACCCGCCGTATCAGACGCCTGAAGAAGAATTACAGAGGCGTCCGCCTGCGCCCTTGGGGCAAATGGGCCGCCGAGATCCGCGACCCGAAACGTGCGACGCGAGTCTGGCTTGGTACCTTCAACACCGCCGAGGACGCCGCACGTGCCTACGATGAAGCCGCCATTAAATTCCGCGGCGCACGTGCCAAACTCAATTTCCCCCTCCCTGGCAATTCATCAACGACTTCCACAACCACCTCCGCCGTCAATGAATCGGCAGTAGCTCCAAGAACATCGCCGATGAAAATGGAGACGAAAAACTACACCTTACCCGAGATTTTCAAGGTCGATGACGACGACGACGACAACGACGACATTCAACGATTGATCAATGACTTTGCAGGCCATTCACGAAGCTAA

Coding sequence (CDS)

ATGTCATCCTACCGCCCCGCCGTCTTCCGCCGCATCACCGAGGAGCAGGAGGTCTCTATCATTGTCGACGCCCTCACCCACGTCATCTCCGGCGCCGCTGCTTCCGGTCTCGAGTTCCGCCACGACGATTTCCTCCGCCGCCTCCTCCTCCCGCCTTCTACTGACAATACCGCCGCCGCCTTCTCGGGTTCTTCAGATTTCGACACGTGTCAAGCCTGCAGAATCAACGGCTGCTTGGGCTGCCACTTCTTCTCCGCCCCCTCCTCCTCCTCCTCCTCCACCCGCCGTATCAGACGCCTGAAGAAGAATTACAGAGGCGTCCGCCTGCGCCCTTGGGGCAAATGGGCCGCCGAGATCCGCGACCCGAAACGTGCGACGCGAGTCTGGCTTGGTACCTTCAACACCGCCGAGGACGCCGCACGTGCCTACGATGAAGCCGCCATTAAATTCCGCGGCGCACGTGCCAAACTCAATTTCCCCCTCCCTGGCAATTCATCAACGACTTCCACAACCACCTCCGCCGTCAATGAATCGGCAGTAGCTCCAAGAACATCGCCGATGAAAATGGAGACGAAAAACTACACCTTACCCGAGATTTTCAAGGTCGATGACGACGACGACGACAACGACGACATTCAACGATTGATCAATGACTTTGCAGGCCATTCACGAAGCTAA

Protein sequence

MSSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAFSGSSDFDTCQACRINGCLGCHFFSAPSSSSSSTRRIRRLKKNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAVNESAVAPRTSPMKMETKNYTLPEIFKVDDDDDDNDDIQRLINDFAGHSRS

Homology

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BLAST of Carg22064-RA vs. NCBI nr
Match: XP_022952769.1 (ethylene-responsive transcription factor ERF109-like [Cucurbita moschata])

HSP 1 Score: 375.2 bits (962), Expect = 1.6e-100
Identity = 209/226 (92.48%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MSSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAA 60
           MSSYRPAVFR ITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAA
Sbjct: 1   MSSYRPAVFRSITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAA 60

Query: 61  FSGSSDFDTCQACRINGCLGCHFFSA-PXXXXXXXXXXXXXXKNYRGVRLRPWGKWAAEI 120
           FSGSSDFDTCQ CRINGCLGCHFFS   XXXXXXXXXXXXXX NYRGVRLRPWGKWAAEI
Sbjct: 61  FSGSSDFDTCQDCRINGCLGCHFFSTXXXXXXXXXXXXXXXXXNYRGVRLRPWGKWAAEI 120

Query: 121 RDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAVNESA 180
           RDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAVNE A
Sbjct: 121 RDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAVNEPA 180

Query: 181 VAPRTSPMKMETKNYTLPEIFKVDXXXXXXXXIQRLINDFAGHSRS 226
           VAPR SPMKMETK+YTLPEIFKVD        IQRLINDFAGHSRS
Sbjct: 181 VAPRASPMKMETKHYTLPEIFKVD----DDDDIQRLINDFAGHSRS 222

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BLAST of Carg22064-RA vs. NCBI nr
Match: XP_022972447.1 (ethylene-responsive transcription factor ERF109-like [Cucurbita maxima])

HSP 1 Score: 327.8 bits (839), Expect = 2.9e-86
Identity = 187/230 (81.30%), Postives = 188/230 (81.74%), Query Frame = 0


Query: 1   MSSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLR--RLLLPPSTDNTA 60
           MSSYRPAVFRRITEEQEVSIIVDALTHV+SGAAASGLEFRHDDFLR              
Sbjct: 1   MSSYRPAVFRRITEEQEVSIIVDALTHVVSGAAASGLEFRHDDFLRXXXXXXXXXXXXXX 60

Query: 61  AAFSGSSDFDTCQACRINGCLGCHFFSAP-----XXXXXXXXXXXXXXKNYRGVRLRPWG 120
            AFSGSSDFDTCQ CRINGCLGCH FSAP     XXXXXXXXXXX   KNYRGVRLRPWG
Sbjct: 61  XAFSGSSDFDTCQDCRINGCLGCHLFSAPXXXXXXXXXXXXXXXXLLKKNYRGVRLRPWG 120

Query: 121 KWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTS 180
           KWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLP NSST     S
Sbjct: 121 KWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPNNSSTXXXXXS 180

Query: 181 AVNESAVAPRTSPMKMETKNYTLPEIFKVDXXXXXXXXIQRLINDFAGHS 224
           AVNE AVAPR SPMKME KNYTLPEIFKVD        IQRLINDFAGHS
Sbjct: 181 AVNELAVAPRASPMKMEAKNYTLPEIFKVD--DDDENDIQRLINDFAGHS 228

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BLAST of Carg22064-RA vs. NCBI nr
Match: XP_022988906.1 (ethylene-responsive transcription factor 11-like [Cucurbita maxima])

HSP 1 Score: 234.2 bits (596), Expect = 4.4e-58
Identity = 151/255 (59.22%), Postives = 165/255 (64.71%), Query Frame = 0


Query: 2   SSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAF 61
           S +  A F R+T+EQE  +IVDALT V+SGAAA+GLEFRHD FL RLL PPST+NT   F
Sbjct: 5   SHHNSAAFPRLTDEQEGVVIVDALTQVVSGAAAAGLEFRHDHFL-RLLHPPSTNNTTTIF 64

Query: 62  SGSSDFDTCQACRINGCLGCHFFSAP-----------XXXXXXXXXXXXXXKNYRGVRLR 121
             SSDFDTC  CRI+GCLGC+FFS P           XXXXXXXXXXX   KNYRGVR R
Sbjct: 65  PPSSDFDTCHICRISGCLGCNFFSTPYSHQPXXXXXXXXXXXXXXXXXRLKKNYRGVRQR 124

Query: 122 PWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTST 181
           PWGKWAAEIRDPKRA RVWLGTFNTAE+AARAYDEAAIKFRG RA+LNFP   NS TT  
Sbjct: 125 PWGKWAAEIRDPKRAARVWLGTFNTAEEAARAYDEAAIKFRGPRARLNFPSSDNSLTTFN 184

Query: 182 TTSAV-------------------NESAVAPRT-SPMKMETKNYTLPEIFKVDXXXXXXX 226
            +                         AVAPRT S M     N  L EIF+ D       
Sbjct: 185 YSPPAXXXXXXXXXXXXXXXXXXXXXXAVAPRTPSSMMKIQNNVVLAEIFEDD------D 244

[Close]

BLAST of Carg22064-RA vs. NCBI nr
Match: XP_022927865.1 (ethylene-responsive transcription factor 11-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 232.3 bits (591), Expect = 1.7e-57
Identity = 148/254 (58.27%), Postives = 164/254 (64.57%), Query Frame = 0


Query: 2   SSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAF 61
           S +  A F R+T+EQE  +IVDALT V+SGAAA+GLEFRHD FL RLL PPST+ T   F
Sbjct: 5   SHHHSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFL-RLLHPPSTNTTTTIF 64

Query: 62  SGSSDFDTCQACRINGCLGCHFFSAP----------XXXXXXXXXXXXXXKNYRGVRLRP 121
             SSDFDTC  CRI+GCLGC+FFS P          XXXXXXXXXX    KNYRGVR RP
Sbjct: 65  PPSSDFDTCHICRISGCLGCNFFSTPSXXXXXXXXXXXXXXXXXXXRRLKKNYRGVRQRP 124

Query: 122 WGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTT 181
           WGKWAAEIRDPKRA RVWLGTFNTAE+AARAYDEAAIKFRG RA+LNFP   NS  T   
Sbjct: 125 WGKWAAEIRDPKRAARVWLGTFNTAEEAARAYDEAAIKFRGPRARLNFPSSDNSLMTFNY 184

Query: 182 TSAV-------------------NESAVAPRTSPMKMETK-NYTLPEIFKVDXXXXXXXX 226
           +                        +AVAPRT    ME + N  L EIF+ D        
Sbjct: 185 SPPAXXXXXXXXXXXXXXXXXXXXXAAVAPRTPSSMMEIQNNVVLAEIFEDD------DD 244

[Close]

BLAST of Carg22064-RA vs. NCBI nr
Match: XP_022927864.1 (ethylene-responsive transcription factor 11-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 228.4 bits (581), Expect = 2.4e-56
Identity = 148/264 (56.06%), Postives = 164/264 (62.12%), Query Frame = 0


Query: 2   SSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAF 61
           S +  A F R+T+EQE  +IVDALT V+SGAAA+GLEFRHD FL RLL PPST+ T   F
Sbjct: 5   SHHHSAAFPRLTDEQEGLVIVDALTQVVSGAAAAGLEFRHDHFL-RLLHPPSTNTTTTIF 64

Query: 62  SGSSDFDTCQACRINGCLGCHFFSAP----------XXXXXXXXXXXXXXKNYRGVRLRP 121
             SSDFDTC  CRI+GCLGC+FFS P          XXXXXXXXXX    KNYRGVR RP
Sbjct: 65  PPSSDFDTCHICRISGCLGCNFFSTPSXXXXXXXXXXXXXXXXXXXRRLKKNYRGVRQRP 124

Query: 122 WGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTT 181
           WGKWAAEIRDPKRA RVWLGTFNTAE+AARAYDEAAIKFRG RA+LNFP   NS  T   
Sbjct: 125 WGKWAAEIRDPKRAARVWLGTFNTAEEAARAYDEAAIKFRGPRARLNFPSSDNSLMTFNY 184

Query: 182 TSAV-----------------------------NESAVAPRTSPMKMETK-NYTLPEIFK 226
           +                                  +AVAPRT    ME + N  L EIF+
Sbjct: 185 SPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVAPRTPSSMMEIQNNVVLAEIFE 244

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BLAST of Carg22064-RA vs. TAIR10
Match: AT4G34410.1 (redox responsive transcription factor 1)

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-33
Identity = 103/199 (51.76%), Postives = 118/199 (59.30%), Query Frame = 0


Query: 11  RITEEQEVSIIVDALTHVISG----AAASGLEFRHDDFLRRLLLPPSTDNTA-AAFSGSS 70
           +++ EQE+S+IV AL HVISG    A   G                S+D+T  +A     
Sbjct: 23  QLSPEQELSVIVSALQHVISGENETAPCQGF---------------SSDSTVISAGMPRL 82

Query: 71  DFDTCQACRINGCLGCHFFSAP------------------------------XXXXXXXX 130
           D DTCQ CRI GCLGC++F AP                              XXXXXXXX
Sbjct: 83  DSDTCQVCRIEGCLGCNYFFAPNQRIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142

Query: 131 XXXXXXKNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARA 175
           XXXXXX  YRGVR RPWGK+AAEIRDPKRATRVWLGTF TAEDAARAYD AAI FRG RA
Sbjct: 143 XXXXXXNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRA 202

[Close]

BLAST of Carg22064-RA vs. TAIR10
Match: AT5G13330.1 (related to AP2 6l)

HSP 1 Score: 108.6 bits (270), Expect = 5.0e-24
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPL 161
           ++YRGVR RPWGKWAAEIRDPK+A RVWLGTF TAE+AA AYD AA+KF+G +AKLNFP 
Sbjct: 37  RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPE 96

Query: 162 PGNSSTTSTTTS 174
                TT+TT S
Sbjct: 97  RVQGPTTTTTIS 108

[Close]

BLAST of Carg22064-RA vs. TAIR10
Match: AT1G43160.1 (related to AP2 6)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFP 161
           K YRGVR RPWGKWAAEIRDP +ATRVWLGTF TAE AARAYD AA++FRG++AKLNFP
Sbjct: 59  KKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117

[Close]

BLAST of Carg22064-RA vs. TAIR10
Match: AT5G50080.1 (ethylene response factor 110)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-23
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFP 161
           + YRGVR RPWGKWAAEIRDP RA RVWLGTF+TAE AARAYDEAA++FRG +AKLNFP
Sbjct: 75  RRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133

[Close]

BLAST of Carg22064-RA vs. TAIR10
Match: AT5G61890.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 4.3e-23
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPL 161
           ++YRGVR RPWGKWAAEIRDPK+A RVWLGTF TAE AA AYDEAA+KF+G++AKLNFP 
Sbjct: 88  RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPE 147

Query: 162 PGNSSTTSTTTSAVNESAVAPRTSP 187
                + ST  S+     + P++ P
Sbjct: 148 RVQLGSNSTYYSSNQIPQMEPQSIP 172

[Close]

BLAST of Carg22064-RA vs. Swiss-Prot
Match: sp|Q9SZ06|EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana OX=3702 GN=ERF109 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.8e-32
Identity = 103/199 (51.76%), Postives = 118/199 (59.30%), Query Frame = 0


Query: 11  RITEEQEVSIIVDALTHVISG----AAASGLEFRHDDFLRRLLLPPSTDNTA-AAFSGSS 70
           +++ EQE+S+IV AL HVISG    A   G                S+D+T  +A     
Sbjct: 23  QLSPEQELSVIVSALQHVISGENETAPCQGF---------------SSDSTVISAGMPRL 82

Query: 71  DFDTCQACRINGCLGCHFFSAP------------------------------XXXXXXXX 130
           D DTCQ CRI GCLGC++F AP                              XXXXXXXX
Sbjct: 83  DSDTCQVCRIEGCLGCNYFFAPNQRIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142

Query: 131 XXXXXXKNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARA 175
           XXXXXX  YRGVR RPWGK+AAEIRDPKRATRVWLGTF TAEDAARAYD AAI FRG RA
Sbjct: 143 XXXXXXNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRA 202

[Close]

BLAST of Carg22064-RA vs. Swiss-Prot
Match: sp|Q9LYU3|EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana OX=3702 GN=ERF113 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.1e-23
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPL 161
           ++YRGVR RPWGKWAAEIRDPK+A RVWLGTF TAE+AA AYD AA+KF+G +AKLNFP 
Sbjct: 37  RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPE 96

Query: 162 PGNSSTTSTTTS 174
                TT+TT S
Sbjct: 97  RVQGPTTTTTIS 108

[Close]

BLAST of Carg22064-RA vs. Swiss-Prot
Match: sp|Q7G1L2|RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana OX=3702 GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-22
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFP 161
           K YRGVR RPWGKWAAEIRDP +ATRVWLGTF TAE AARAYD AA++FRG++AKLNFP
Sbjct: 59  KKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117

[Close]

BLAST of Carg22064-RA vs. Swiss-Prot
Match: sp|Q70II3|EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana OX=3702 GN=ERF110 PE=2 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-22
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFP 161
           + YRGVR RPWGKWAAEIRDP RA RVWLGTF+TAE AARAYDEAA++FRG +AKLNFP
Sbjct: 75  RRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133

[Close]

BLAST of Carg22064-RA vs. Swiss-Prot
Match: sp|Q9FH54|EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana OX=3702 GN=ERF114 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.7e-22
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 102 KNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPL 161
           ++YRGVR RPWGKWAAEIRDPK+A RVWLGTF TAE AA AYDEAA+KF+G++AKLNFP 
Sbjct: 88  RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPE 147

Query: 162 PGNSSTTSTTTSAVNESAVAPRTSP 187
                + ST  S+     + P++ P
Sbjct: 148 RVQLGSNSTYYSSNQIPQMEPQSIP 172

[Close]

BLAST of Carg22064-RA vs. TrEMBL
Match: tr|A0A2H4V3T2|A0A2H4V3T2_LUFAE (Ethylene-responsive transcription factor OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 136/250 (54.40%), Postives = 151/250 (60.40%), Query Frame = 0


Query: 9   FRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAFSGSSDFD 68
           FRRIT+EQE+S+IVDALT V+SG AA GLEF+HD FL RLLLP + D  AA F  SSDFD
Sbjct: 11  FRRITDEQELSVIVDALTQVVSGPAADGLEFQHDRFL-RLLLPSAND--AAVFPPSSDFD 70

Query: 69  TCQACRINGCLGCHFFSAP--------XXXXXXXXXXXXXXKNYRGVRLRPWGKWAAEIR 128
           TC  CRI+GCLGC+FFSAP                      KNYRGVR RPWGKWAAEIR
Sbjct: 71  TCHVCRISGCLGCNFFSAPSSHQQPTTANSNNSGRRVRRQKKNYRGVRQRPWGKWAAEIR 130

Query: 129 DPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAV----- 188
           DPKRA RVWLGTFNTAEDAARAYD AAIKFRG RA+LNFP    S  T   +        
Sbjct: 131 DPKRAARVWLGTFNTAEDAARAYDAAAIKFRGPRARLNFPSTDTSLMTFNYSXXXXXXXX 190

Query: 189 -----------------NESAVAPRTS---PMKMETKNYTLPEIFKVDXXXXXXXXIQRL 226
                            NE+AVAPRTS    M++       PE+   D        +Q L
Sbjct: 191 XXXXXXXXXXXXXXXFQNEAAVAPRTSSSTKMEIIQNEVVFPEMLDED------DDLQTL 250

[Close]

BLAST of Carg22064-RA vs. TrEMBL
Match: tr|A0A1S3BZ96|A0A1S3BZ96_CUCME (ethylene-responsive transcription factor ERF109-like OS=Cucumis melo OX=3656 GN=LOC103495234 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.5e-50
Identity = 119/174 (68.39%), Postives = 128/174 (73.56%), Query Frame = 0


Query: 9   FRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAFSGSSDFD 68
           FRRITEEQE+S++VDALT V+SGA++S L F HD FL RLL PP        FS SS+FD
Sbjct: 9   FRRITEEQELSVMVDALTQVVSGASSSTLSFHHDHFL-RLLFPPI--XXXXXFSSSSEFD 68

Query: 69  TCQACRINGCLGCHFFS--------------APXXXXXXXXXXXXXXKNYRGVRLRPWGK 128
           TC  C+INGCLGCHFFS                XXXXXXXXX     KNYRGVR RPWGK
Sbjct: 69  TCPLCKINGCLGCHFFSXXXXXXXXXXXXXXXXXXXXXXXXXVKRLKKNYRGVRQRPWGK 128

Query: 129 WAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTT 169
           WAAEIRDPKRA RVWLGTFNTAEDAARAYDEAAIKFRG RAKLNFP P  S +T
Sbjct: 129 WAAEIRDPKRAARVWLGTFNTAEDAARAYDEAAIKFRGPRAKLNFPFPDYSLST 179

[Close]

BLAST of Carg22064-RA vs. TrEMBL
Match: tr|A0A0A0K4S2|A0A0A0K4S2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073700 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.9e-49
Identity = 124/177 (70.06%), Postives = 135/177 (76.27%), Query Frame = 0


Query: 4   YRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAFSG 63
           + PA FRRITEEQE+S+IVDALT V+SGA +S L F HD FL R+L PP   N    FS 
Sbjct: 8   FSPA-FRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFL-RVLFPPI--NPTPPFSS 67

Query: 64  SSDFDTCQACRINGCLGCHFFS-----------APXXXXXXXXXXXXXXKNYRGVRLRPW 123
           SS+FDTC  C+INGCLGCHFFS             XXXXXXXXXXXXXX NYRGVR RPW
Sbjct: 68  SSEFDTCPLCKINGCLGCHFFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYRGVRQRPW 127

Query: 124 GKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTS 170
           GKWAAEIRDP RA RVWLGTFNTAEDAARAYDEAAIKFRG RAKLNFP P  S +++
Sbjct: 128 GKWAAEIRDPIRAARVWLGTFNTAEDAARAYDEAAIKFRGPRAKLNFPFPDYSLSST 180

[Close]

BLAST of Carg22064-RA vs. TrEMBL
Match: tr|B9RYI3|B9RYI3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0813580 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 94/174 (54.02%), Postives = 111/174 (63.79%), Query Frame = 0


Query: 10  RRITEEQEVSIIVDALTHVISGAAASGLEFRHD--DFLRRLLLPPS-----TDNTAAAFS 69
           +R+T+EQE +I+V AL +V+SG+A+S      D    L  L  P S     T  TAAA +
Sbjct: 35  QRLTQEQEFAIMVAALGNVLSGSASSSTAMASDFSQELFHLSFPSSNSQFATSGTAAAAT 94

Query: 70  GSS------DFDTCQACRINGCLGCHFF----SAPXXXXXXXXXXXXXXKNYRGVRLRPW 129
             +      D DTC  C+I GCLGC+FF                     KNYRGVR RPW
Sbjct: 95  AINPILPPLDLDTCNVCKIRGCLGCNFFPPNQEESSNGNNKKGTRKRGKKNYRGVRQRPW 154

Query: 130 GKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSS 167
           GKWAAEIRDP+RATRVWLGTFNTAEDAARAYD+AAI+FRG RAKLNFP P N+S
Sbjct: 155 GKWAAEIRDPRRATRVWLGTFNTAEDAARAYDKAAIEFRGPRAKLNFPFPDNTS 208

[Close]

BLAST of Carg22064-RA vs. TrEMBL
Match: tr|A0A2C9V3H0|A0A2C9V3H0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G056300 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.2e-37
Identity = 91/176 (51.70%), Postives = 105/176 (59.66%), Query Frame = 0


Query: 11  RITEEQEVSIIVDALTHVISGAAAS------------GLEF-----RHDDFLRRLLLPPS 70
           R+T+EQE+SI+V AL +V+SG A +             L+F         F         
Sbjct: 24  RLTQEQELSIMVAALKNVVSGGATNTATLTDVSQELFRLQFSTTAATSSQFATSSSATTV 83

Query: 71  TDNTAAAFSGSSDFDTCQACRINGCLGCHFFSAPXXXXXXXXXXXXXXKNYRGVRLRPWG 130
           TD   +     SD DTC  C+I GCLGC+FF  P              KNYRGVR RPWG
Sbjct: 84  TDGFCSPLLPPSDLDTCNVCKIKGCLGCNFF--PPNQEEKKGKRKRVKKNYRGVRQRPWG 143

Query: 131 KWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTS 170
           KWAAEIRDP+RATRVWLGTFNTAE+AARAYD+AAI FRG RAKLNFP P N   TS
Sbjct: 144 KWAAEIRDPRRATRVWLGTFNTAEEAARAYDKAAIDFRGPRAKLNFPFPDNIGNTS 197

The following BLAST results are available for this feature:

BLAST of Carg22064-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952769.1	1.6e-100	92.48	ethylene-responsive transcription factor ERF109-like [Cucurbita moschata]	[more]
XP_022972447.1	2.9e-86	81.30	ethylene-responsive transcription factor ERF109-like [Cucurbita maxima]	[more]
XP_022988906.1	4.4e-58	59.22	ethylene-responsive transcription factor 11-like [Cucurbita maxima]	[more]
XP_022927865.1	1.7e-57	58.27	ethylene-responsive transcription factor 11-like isoform X2 [Cucurbita moschata]	[more]
XP_022927864.1	2.4e-56	56.06	ethylene-responsive transcription factor 11-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg22064-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34410.1	2.7e-33	51.76	redox responsive transcription factor 1	[more]
AT5G13330.1	5.0e-24	70.83	related to AP2 6l	[more]
AT1G43160.1	1.5e-23	81.36	related to AP2 6	[more]
AT5G50080.1	1.9e-23	81.36	ethylene response factor 110	[more]
AT5G61890.1	4.3e-23	61.18	Integrase-type DNA-binding superfamily protein	[more]

BLAST of Carg22064-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZ06\|EF109_ARATH	4.8e-32	51.76	Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9LYU3\|EF113_ARATH	9.1e-23	70.83	Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q7G1L2\|RAP26_ARATH	2.6e-22	81.36	Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q70II3\|EF110_ARATH	3.5e-22	81.36	Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9FH54\|EF114_ARATH	7.7e-22	61.18	Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg22064-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2H4V3T2\|A0A2H4V3T2_LUFAE	1.3e-55	54.40	Ethylene-responsive transcription factor OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
tr\|A0A1S3BZ96\|A0A1S3BZ96_CUCME	6.5e-50	68.39	ethylene-responsive transcription factor ERF109-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0K4S2\|A0A0A0K4S2_CUCSA	1.9e-49	70.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073700 PE=4 SV=1	[more]
tr\|B9RYI3\|B9RYI3_RICCO	1.5e-38	54.02	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0813580 PE=4 SV=1	[more]
tr\|A0A2C9V3H0\|A0A2C9V3H0_MANES	2.2e-37	51.70	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G056300 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22064	Carg22064	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22064-RA.CDS.1	Carg22064-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22064-RA.exon.1	Carg22064-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22064-RA	Carg22064-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 104..115 score: 73.48 coord: 126..142 score: 72.19
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 103..166 e-value: 1.2E-38 score: 144.4
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 103..152 e-value: 1.6E-13 score: 50.5
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 103..160 score: 24.605
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 102..160 e-value: 4.93176E-32 score: 111.98
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 102..161 e-value: 3.4E-31 score: 108.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..185
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 88..193
None	No IPR available	PANTHER	PTHR31190:SF66	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABR1-RELATED	coord: 88..193
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 103..161