Carg17888 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17888
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pheromone-processing carboxypeptidase KEX1-like
Location	Cucurbita_argyrosperma_scaffold_114 : 112180 .. 113276 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAGAATACAAATGGAAGAACCAAAAGACAGAAAGGAATAAGAATTCTGAAGGTGAGATAGGTAATGTAAGGGTTATGAAGATGTCCATTTCCATGCTATTTAAGAACATGAGTCTTATATTCTCTCTAGTGTTGTAGGGCTGAGCTAACCCATCTCTCTGCATTTAAAGCTACCTCTTCTAATAATGATAGAATGCAGAGAAGAGTTAAGATGATTGCCATCTTCTGTGATGAACCAACCCCCCCATGTCCTTTCAAATTCAAGAAACTTTAGCATGTTTGTATATCTTTTGCAATAGGAAGGATTTCTCTTTCATGGACTCCTTCTAGCTGTCTTCTGCTCAGTGAAAAAGTCAGAGAATTTATTTGCCTTTGGATTTCCAGGTGGTGCAGTGAGGGTTTTTATCTCTACCCATTAAGAACTTGTGTGTTTCTTTTCATGTTTTTTTTAAAAAATTGGGTTTTGTAGCTTTCATATAATTAGAGAAGCCTGTTTGGGTCAGAGAGGTAGCAAAAGGGTATGAATGGTTTCCTCAGGTGTCTAAATTCAGCCTTCCCCCAATTCTGTTCTTGTTCTTGTTCTTGTTCTTGTTCTGTGTTCTGTGTTCCTTAAACTCCTCGAATTGCTTGTGTCCAGTTATGGAGCCATCCCAAATGTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCCCCTGCAGCTGCTGATGGTTCCAGTGATGTTGATACTGGTGCAGCTTCTGATGAAGAAGAAGATGAAGAACACAAAGGCTATTATGATATTAACCAAGATGACAGCGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAAGACGCCACCCATTTGGTGGGATGAAGAATCCCCCCCATGCTTTGCTGCCTCTCTTCACCCACCAGAACAAGCCAAACTCTTGCTTCCAAACCAAACCCAAACCCAAACCCAAGAAGCCATTAAAGAAGAAGCAAAGAGCTGAAAGAAAAGAAGTGAAAGAGCCAAAGAGCTCAGTTCAGAGCAGCTCCAAGGCAAGAAAGAGCATCTGGATGGGTAAAAGAAAC

mRNA sequence

GAAAAGAATACAAATGGAAGAACCAAAAGACAGAAAGGAATAAGAATTCTGAAGTTATGGAGCCATCCCAAATGTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCCCCTGCAGCTGCTGATGGTTCCAGTGATGTTGATACTGGTGCAGCTTCTGATGAAGAAGAAGATGAAGAACACAAAGGCTATTATGATATTAACCAAGATGACAGCGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAAGACGCCACCCATTTGGTGGGATGAAGAATCCCCCCCATGCTTTGCTGCCTCTCTTCACCCACCAGAACAAGCCAAACTCTTGCTTCCAAACCAAACCCAAACCCAAACCCAAGAAGCCATTAAAGAAGAAGCAAAGAGCTGAAAGAAAAGAAGTGAAAGAGCCAAAGAGCTCAGTTCAGAGCAGCTCCAAGGCAAGAAAGAGCATCTGGATGGGTAAAAGAAAC

Coding sequence (CDS)

ATGGAGCCATCCCAAATGTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCCCCTGCAGCTGCTGATGGTTCCAGTGATGTTGATACTGGTGCAGCTTCTGATGAAGAAGAAGATGAAGAACACAAAGGCTATTATGATATTAACCAAGATGACAGCGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAAGACGCCACCCATTTGGTGGGATGAAGAATCCCCCCCATGCTTTGCTGCCTCTCTTCACCCACCAGAACAAGCCAAACTCTTGCTTCCAAACCAAACCCAAACCCAAACCCAAGAAGCCATTAAAGAAGAAGCAAAGAGCTGAAAGAAAAGAAGTGAAAGAGCCAAAGAGCTCAGTTCAGAGCAGCTCCAAGGCAAGAAAGAGCATCTGGATGGGTAAAAGAAAC

Protein sequence

MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

Homology

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BLAST of Carg17888 vs. NCBI nr
Match: XP_022987932.1 (uncharacterized protein LOC111485335 isoform X3 [Cucurbita maxima] >XP_022987933.1 uncharacterized protein LOC111485335 isoform X3 [Cucurbita maxima])

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 141/152 (92.76%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGXXXXXXXXXXXXXXXXXXXXX 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTG   XXXXXXXXXXXXXXXXXX
Sbjct: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTG-AAXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKXXXXXXX 120
           XXXXXXXXXXXXX     RHPFGGMKNPPHALLPLFTHQNKPNSC +TKPKPKXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCLETKPKPKXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXSSKARKSIWMGKRN 153
           XXXXXXXXXXXXXXXXXXSSKARKSIWMGKR+
Sbjct: 121 XXXXXXXXXXXXXXXXXXSSKARKSIWMGKRS 151

[Close]

BLAST of Carg17888 vs. NCBI nr
Match: XP_022987931.1 (uncharacterized protein LOC111485335 isoform X2 [Cucurbita maxima])

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 141/152 (92.76%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGXXXXXXXXXXXXXXXXXXXXX 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTG   XXXXXXXXXXXXXXXXXX
Sbjct: 6   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTG-AAXXXXXXXXXXXXXXXXXX 65

Query: 61  XXXXXXXXXXXXXXXXXXRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKXXXXXXX 120
           XXXXXXXXXXXXX     RHPFGGMKNPPHALLPLFTHQNKPNSC +TKPKPKXXXXXXX
Sbjct: 66  XXXXXXXXXXXXXSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCLETKPKPKXXXXXXX 125

Query: 121 XXXXXXXXXXXXXXXXXXSSKARKSIWMGKRN 153
           XXXXXXXXXXXXXXXXXXSSKARKSIWMGKR+
Sbjct: 126 XXXXXXXXXXXXXXXXXXSSKARKSIWMGKRS 156

[Close]

BLAST of Carg17888 vs. NCBI nr
Match: XP_022987928.1 (uncharacterized protein LOC111485335 isoform X1 [Cucurbita maxima] >XP_022987930.1 uncharacterized protein LOC111485335 isoform X1 [Cucurbita maxima])

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 141/152 (92.76%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGXXXXXXXXXXXXXXXXXXXXX 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTG   XXXXXXXXXXXXXXXXXX
Sbjct: 24  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTG-AAXXXXXXXXXXXXXXXXXX 83

Query: 61  XXXXXXXXXXXXXXXXXXRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKXXXXXXX 120
           XXXXXXXXXXXXX     RHPFGGMKNPPHALLPLFTHQNKPNSC +TKPKPKXXXXXXX
Sbjct: 84  XXXXXXXXXXXXXSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCLETKPKPKXXXXXXX 143

Query: 121 XXXXXXXXXXXXXXXXXXSSKARKSIWMGKRN 153
           XXXXXXXXXXXXXXXXXXSSKARKSIWMGKR+
Sbjct: 144 XXXXXXXXXXXXXXXXXXSSKARKSIWMGKRS 174

[Close]

BLAST of Carg17888 vs. NCBI nr
Match: XP_022921475.1 (uncharacterized protein LOC111429737 isoform X3 [Cucurbita moschata] >XP_022921476.1 uncharacterized protein LOC111429737 isoform X3 [Cucurbita moschata] >XP_022921477.1 uncharacterized protein LOC111429737 isoform X3 [Cucurbita moschata])

HSP 1 Score: 146.4 bits (368), Expect = 8.1e-32
Identity = 138/154 (89.61%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGXXXXXXXXXXXXXXXXXXXXX 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXRHPFGGMKNPPHALLPLFTHQNKPNSCFQTK--PKPKXXXXX 120
           XXXXXXXXXXXXXXXXXXRHPFGGMKNPPHALLPLFTHQNKPNSCF+TK      XXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXRHPFGGMKNPPHALLPLFTHQNKPNSCFETKXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXSSKARKSIWMGKRN 153
           XXXXXXXXXXXX        SSKARK IWMGKRN
Sbjct: 121 XXXXXXXXXXXXEPKSSVQSSSKARKCIWMGKRN 154

[Close]

BLAST of Carg17888 vs. NCBI nr
Match: XP_022921472.1 (uncharacterized protein LOC111429737 isoform X1 [Cucurbita moschata] >XP_022921473.1 uncharacterized protein LOC111429737 isoform X1 [Cucurbita moschata])

HSP 1 Score: 146.4 bits (368), Expect = 8.1e-32
Identity = 138/154 (89.61%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGXXXXXXXXXXXXXXXXXXXXX 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGXXXXXXXXXXXXXXXXXXXXX
Sbjct: 24  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGXXXXXXXXXXXXXXXXXXXXX 83

Query: 61  XXXXXXXXXXXXXXXXXXRHPFGGMKNPPHALLPLFTHQNKPNSCFQTK--PKPKXXXXX 120
           XXXXXXXXXXXXXXXXXXRHPFGGMKNPPHALLPLFTHQNKPNSCF+TK      XXXXX
Sbjct: 84  XXXXXXXXXXXXXXXXXXRHPFGGMKNPPHALLPLFTHQNKPNSCFETKXXXXXXXXXXX 143

Query: 121 XXXXXXXXXXXXXXXXXXXXSSKARKSIWMGKRN 153
           XXXXXXXXXXXX        SSKARK IWMGKRN
Sbjct: 144 XXXXXXXXXXXXEPKSSVQSSSKARKCIWMGKRN 177

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BLAST of Carg17888 vs. TrEMBL
Match: tr|A0A0A0LUQ4|A0A0A0LUQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014530 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MEPSQMFGVSEECHSSESGWTMYIGSPA 29
          MEPSQ+FGVSEECHSSESGWTMYIGSPA
Sbjct: 1  MEPSQIFGVSEECHSSESGWTMYIGSPA 28

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BLAST of Carg17888 vs. TrEMBL
Match: tr|A0A1Q3CCH0|A0A1Q3CCH0_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21233 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 1  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVD 38
          ME SQ+FG +EECHSSESGWTMYIGSP  +D   D D
Sbjct: 1  MESSQLFGDTEECHSSESGWTMYIGSPVHSDDGGDAD 37

[Close]

BLAST of Carg17888 vs. TrEMBL
Match: tr|A0A2I4E695|A0A2I4E695_9ROSI (pheromone-processing carboxypeptidase KEX1-like OS=Juglans regia OX=51240 GN=LOC108986684 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.5e-05
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1  MEPSQMFGVSEECHSSESGWTMYIGSPAAAD 32
          ME SQMFG +EECHSSESGWTMYIGSP   D
Sbjct: 1  MESSQMFGGTEECHSSESGWTMYIGSPIYGD 31

[Close]

BLAST of Carg17888 vs. TrEMBL
Match: tr|A0A2I4FCV0|A0A2I4FCV0_9ROSI (rRNA biogenesis protein rrp36-like OS=Juglans regia OX=51240 GN=LOC108997579 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1  MEPSQMFGVSEECHSSESGWTMYIGSPAAAD 32
          ME SQ+FG +EECHSSESGWTMYIGSP   D
Sbjct: 1  MESSQVFGAAEECHSSESGWTMYIGSPIYGD 31

[Close]

BLAST of Carg17888 vs. TrEMBL
Match: tr|A0A2P4M3E2|A0A2P4M3E2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_42330 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 1  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSD 36
          M+ SQMFG +EEC SSESGWTMYIGSP   D  SD
Sbjct: 46 MDSSQMFGGTEECQSSESGWTMYIGSPIYGDDDSD 80

The following BLAST results are available for this feature:

BLAST of Carg17888 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022987932.1	1.3e-34	92.76	uncharacterized protein LOC111485335 isoform X3 [Cucurbita maxima] >XP_022987933...	[more]
XP_022987931.1	1.3e-34	92.76	uncharacterized protein LOC111485335 isoform X2 [Cucurbita maxima]	[more]
XP_022987928.1	1.3e-34	92.76	uncharacterized protein LOC111485335 isoform X1 [Cucurbita maxima] >XP_022987930...	[more]
XP_022921475.1	8.1e-32	89.61	uncharacterized protein LOC111429737 isoform X3 [Cucurbita moschata] >XP_0229214...	[more]
XP_022921472.1	8.1e-32	89.61	uncharacterized protein LOC111429737 isoform X1 [Cucurbita moschata] >XP_0229214...	[more]

BLAST of Carg17888 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg17888 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg17888 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUQ4\|A0A0A0LUQ4_CUCSA	1.7e-06	96.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014530 PE=4 SV=1	[more]
tr\|A0A1Q3CCH0\|A0A1Q3CCH0_CEPFO	1.1e-05	70.27	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21233 PE=4...	[more]
tr\|A0A2I4E695\|A0A2I4E695_9ROSI	9.5e-05	80.65	pheromone-processing carboxypeptidase KEX1-like OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4FCV0\|A0A2I4FCV0_9ROSI	1.2e-04	77.42	rRNA biogenesis protein rrp36-like OS=Juglans regia OX=51240 GN=LOC108997579 PE=...	[more]
tr\|A0A2P4M3E2\|A0A2P4M3E2_QUESU	2.8e-04	71.43	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_42330 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17888-RA	Carg17888-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..152
None	No IPR available	PANTHER	PTHR33347	FAMILY NOT NAMED	coord: 4..151
None	No IPR available	PANTHER	PTHR33347:SF13	SUBFAMILY NOT NAMED	coord: 4..151

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17888	Cla019024	Watermelon (97103) v1	carwmB0461
Carg17888	Csa1G014530	Cucumber (Chinese Long) v2	carcuB0494
Carg17888	ClCG06G015330	Watermelon (Charleston Gray)	carwcgB0451
Carg17888	CSPI01G03150	Wild cucumber (PI 183967)	carcpiB0500
Carg17888	CmaCh10G002720	Cucurbita maxima (Rimu)	carcmaB0640
Carg17888	CmoCh11G002390	Cucurbita moschata (Rifu)	carcmoB0623
Carg17888	CmoCh10G002910	Cucurbita moschata (Rifu)	carcmoB0622
Carg17888	Lsi06G013770	Bottle gourd (USVL1VR-Ls)	carlsiB420
Carg17888	Cp4.1LG04g14400	Cucurbita pepo (Zucchini)	carcpeB0651
Carg17888	Cp4.1LG18g07410	Cucurbita pepo (Zucchini)	carcpeB0646
Carg17888	CsGy1G003120	Cucumber (Gy14) v2	carcgybB0471
Carg17888	CsaV3_1G003210	Cucumber (Chinese Long) v3	carcucB0497
Carg17888	Cla97C06G124850	Watermelon (97103) v2	carwmbB0487

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17888	Carg09175	Silver-seed gourd	carcarB459

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17888	Cucumber (Gy14) v1	carcgyB0535
Carg17888	Silver-seed gourd	carcarB410
Carg17888	Silver-seed gourd	carcarB461
Carg17888	Cucumber (Gy14) v2	carcgybB0468
Carg17888	Cucumber (Gy14) v2	carcgybB0469
Carg17888	Cucumber (Gy14) v1	carcgyB0534
Carg17888	Cucumber (Gy14) v1	carcgyB0530
Carg17888	Cucumber (Gy14) v1	carcgyB0532
Carg17888	Cucurbita maxima (Rimu)	carcmaB0641
Carg17888	Cucurbita moschata (Rifu)	carcmoB0627
Carg17888	Cucurbita moschata (Rifu)	carcmoB0626
Carg17888	Cucurbita pepo (Zucchini)	carcpeB0645
Carg17888	Cucurbita pepo (Zucchini)	carcpeB0647
Carg17888	Wild cucumber (PI 183967)	carcpiB0497
Carg17888	Wild cucumber (PI 183967)	carcpiB0498
Carg17888	Wild cucumber (PI 183967)	carcpiB0502
Carg17888	Cucumber (Chinese Long) v2	carcuB0491
Carg17888	Cucumber (Chinese Long) v2	carcuB0492
Carg17888	Cucumber (Chinese Long) v2	carcuB0496
Carg17888	Cucumber (Chinese Long) v3	carcucB0494
Carg17888	Cucumber (Chinese Long) v3	carcucB0495
Carg17888	Cucumber (Chinese Long) v3	carcucB0499
Carg17888	Bottle gourd (USVL1VR-Ls)	carlsiB417
Carg17888	Melon (DHL92) v3.5.1	carmeB0467
Carg17888	Melon (DHL92) v3.5.1	carmeB0469
Carg17888	Melon (DHL92) v3.6.1	carmedB0470
Carg17888	Melon (DHL92) v3.6.1	carmedB0472
Carg17888	Watermelon (Charleston Gray)	carwcgB0449
Carg17888	Watermelon (97103) v1	carwmB0459
Carg17888	Watermelon (97103) v2	carwmbB0484
Carg17888	Wax gourd	carwgoB0560
Carg17888	Wax gourd	carwgoB0563
Carg17888	Cucurbita maxima (Rimu)	carcmaB0645
Carg17888	Cucumber (Gy14) v2	carcgybB0473