Carg09175 (gene) Silver-seed gourd

Overview
NameCarg09175
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionacidic leucine-rich nuclear phosphoprotein 32 family member B-like
LocationCucurbita_argyrosperma_scaffold_063 : 909632 .. 910345 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCCCAAAATGTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACCATGTATATTGGATCTCCTGTAGATGATTCCAGTGATGGTGATGAAGATAACGATGTAGAATATGGAAAGAATAGAGTTTTTCATGCAAATCACCAAGATGATAGTGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGCCATCAACCAGATCACCCTTTTGGAGGACATGGGAGCATGAAACACCAGAAGCCATTAATGGAGAAGCACAGAGCTGAGAGGAAGGAAGTGAAAGAGAAGCTGGTTTTGGTGGGGCAAAAACCAAAGAGTTCGGCCCAGAGTAGCTCAAAGGTAAGAAAGAGCATTTGGATGGGCAAAAGAAACTAGCCAACCTGCCTTTCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTCTTGTTCTCTGGTTTTTCCTTTATGCTTTCTTGTAGGCTGAAACTGAACTGAAAAATATGAGTTGTGTATCCTTTACTGCTGTTTTTTTTTTTTTTTTTTTTTTGTTCATCTACATGTATTTCCCTGAAAGGAGCAGTGGATTTGGTTTTGGGTCAATTCTTGCATTTCACTGAACCAGAAAGGAAACTGAACAGATCCAATTCCTTTTGGGGTTTCTTTTCCCATACCTGTTCTGTAAATGCTCTGTTTTTTGAGCTGTAGGAGTAG

mRNA sequence

ATGGAGTCTTCCCAAAATGTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACCATGTATATTGGATCTCCTGTAGATGATTCCAGTGATGGTGATGAAGATAACGATGTAGAATATGGAAAGAATAGAGTTTTTCATGCAAATCACCAAGATGATAGTGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGCCATCAACCAGATCACCCTTTTGGAGGACATGGGAGCATGAAACACCAGAAGCCATTAATGGAGAAGCACAGAGCTGAGAGGAAGGAAGTGAAAGAGAAGCTGGTTTTGGTGGGGCAAAAACCAAAGAGTTCGGCCCAGAGTAGCTCAAAGGAGTAG

Coding sequence (CDS)

ATGGAGTCTTCCCAAAATGTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACCATGTATATTGGATCTCCTGTAGATGATTCCAGTGATGGTGATGAAGATAACGATGTAGAATATGGAAAGAATAGAGTTTTTCATGCAAATCACCAAGATGATAGTGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGCCATCAACCAGATCACCCTTTTGGAGGACATGGGAGCATGAAACACCAGAAGCCATTAATGGAGAAGCACAGAGCTGAGAGGAAGGAAGTGAAAGAGAAGCTGGTTTTGGTGGGGCAAAAACCAAAGAGTTCGGCCCAGAGTAGCTCAAAGGAGTAG

Protein sequence

MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKNRVFHANHQDDSDDSMASDASSGPSHQPDHPFGGHGSMKHQKPLMEKHRAERKEVKEKLVLVGQKPKSSAQSSSKE
Homology
[Close]
BLAST of Carg09175 vs. NCBI nr
Match: XP_022933470.1 (uncharacterized protein LOC111440875 [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 8.1e-51
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKNRVFHANHQDXXXXXX 60
           MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKNRVFHANHQDXXXXXX
Sbjct: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKNRVFHANHQDXXXXXX 60

Query: 61  XXXXXXGPSHQPDHPFGGHGSMKHQKPLMEKHRAERKEVKEKLVLVGQKPKSSAQSSSK 120
           XXXXXXGPSHQPDHPFGGHGSMKHQKPLMEKHRAERKEVKEKLVLVGQKPKSSAQSSSK
Sbjct: 61  XXXXXXGPSHQPDHPFGGHGSMKHQKPLMEKHRAERKEVKEKLVLVGQKPKSSAQSSSK 119

[Close]
BLAST of Carg09175 vs. NCBI nr
Match: XP_023531634.1 (uncharacterized protein LOC111793816 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 4.9e-48
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0 

Query: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKNRVFHANHQDXXXXXX 60
           MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKN+ FHANHQDXXXXXX
Sbjct: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKNKGFHANHQDXXXXXX 60

Query: 61  XXXXXXGPSHQPDHPFGGHGSMKHQKPLMEKHRAERKEVKEKLVLVGQKPKSSAQSSSK 120
           XXXXXXGPSHQPDHPFGGHGSMKHQKPL+EKHR ERKEVKEKLVLVGQKPKSS QSSSK
Sbjct: 61  XXXXXXGPSHQPDHPFGGHGSMKHQKPLIEKHRDERKEVKEKLVLVGQKPKSSVQSSSK 119

[Close]
BLAST of Carg09175 vs. NCBI nr
Match: XP_022974149.1 (uncharacterized protein LOC111472737 [Cucurbita maxima])

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 106/119 (89.08%), Postives = 109/119 (91.60%), Query Frame = 0 

Query: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKNRVFHANHQDXXXXXX 60
           MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDED+DVEYGKN+ FHANHQD XXXXX
Sbjct: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDDDVEYGKNKGFHANHQDDXXXXX 60

Query: 61  XXXXXXGPSHQPDHPFGGHGSMKHQKPLMEKHRAERKEVKEKLVLVGQKPKSSAQSSSK 120
                 GPSHQPDHPF GHGSMKHQKPLMEKHRAERKEVK+KLVLVGQKPKSS QSSSK
Sbjct: 61  ASDASSGPSHQPDHPFAGHGSMKHQKPLMEKHRAERKEVKDKLVLVGQKPKSSVQSSSK 119

[Close]
BLAST of Carg09175 vs. NCBI nr
Match: XP_022135291.1 (uncharacterized protein LOC111007289 isoform X1 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 3.6e-19
Identity = 70/145 (48.28%), Postives = 78/145 (53.79%), Query Frame = 0 

Query: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKNRVF------HANHQD 60
           ME SQ  GV+EECHSSESGWTMYIGSP   S                       + N+QD
Sbjct: 1   MEPSQIFGVAEECHSSESGWTMYIGSPAGGSXXXXXXXXXXXXXXXXXXXXXXCYGNNQD 60

Query: 61  XXXXXXXXXXXXGPSHQPDHPFGGHGSMKH--------------------QKPLMEKHRA 120
                       GPSHQ  HPFGG+G +K+                    +KPLMEK RA
Sbjct: 61  ESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETKTKKPLMEKQRA 120

[Close]
BLAST of Carg09175 vs. NCBI nr
Match: XP_022135292.1 (uncharacterized protein LOC111007289 isoform X2 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 7.6e-17
Identity = 65/136 (47.79%), Postives = 72/136 (52.94%), Query Frame = 0 

Query: 10  SEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKNRVF------HANHQDXXXXXXXXX 69
           SEECHSSESGWTMYIGSP   S                       + N+QD         
Sbjct: 4   SEECHSSESGWTMYIGSPAGGSXXXXXXXXXXXXXXXXXXXXXXCYGNNQDESDDSMASD 63

Query: 70  XXXGPSHQPDHPFGGHGSMKH--------------------QKPLMEKHRAERKEVKEKL 120
              GPSHQ  HPFGG+G +K+                    +KPLMEK RAERKEVKEKL
Sbjct: 64  ASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETKTKKPLMEKQRAERKEVKEKL 123

[Close]
BLAST of Carg09175 vs. TrEMBL
Match: tr|A0A0A0LUQ4|A0A0A0LUQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014530 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 65/137 (47.45%), Postives = 70/137 (51.09%), Query Frame = 0 

Query: 1   MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDEDNDVEYGKNRVFHANHQDXXXXXX 60
           ME SQ  GVSEECHSSESGWTMYIGSP +                         XXXXXX
Sbjct: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXGPSHQPDHPFGGHGSMKH------------------QKPLMEKHRAERKEVKEK 120
           XXXXXX  S  P H  G H   K                   +KPLMEK + +R E KE 
Sbjct: 61  XXXXXXXASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKE- 120

[Close]
BLAST of Carg09175 vs. TrEMBL
Match: tr|A0A1Q3CCH0|A0A1Q3CCH0_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21233 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 1  MESSQNVGVSEECHSSESGWTMYIGSPVDDSSDGDED 38
          MESSQ  G +EECHSSESGWTMYIGSPV     GD D
Sbjct: 1  MESSQLFGDTEECHSSESGWTMYIGSPVHSDDGGDAD 37

[Close]
BLAST of Carg09175 vs. TrEMBL
Match: tr|A0A1U8NBQ4|A0A1U8NBQ4_GOSHI (acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Gossypium hirsutum OX=3635 GN=LOC107946567 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-04
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 1  MESSQNVGVSEECHSSESGWTMYIGSPV---DDSSDGDE---DNDVEYGKNRVFHANHQ 54
          MESS+  G  EECHSSESGWTMYIGSP+   DDS DG     D++  YG +   HA+ Q
Sbjct: 1  MESSKIYGGIEECHSSESGWTMYIGSPIHGGDDSGDGQSEKADDEGIYGVDN--HADEQ 57

[Close]
BLAST of Carg09175 vs. TrEMBL
Match: tr|A0A0D2T3R8|A0A0D2T3R8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G201100 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-04
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 1  MESSQNVGVSEECHSSESGWTMYIGSPV---DDSSDGDE---DNDVEYGKNRVFHANHQ 54
          MESS+  G  EECHSSESGWTMYIGSP+   DDS DG     D++  YG +   HA+ Q
Sbjct: 1  MESSKIYGGIEECHSSESGWTMYIGSPIHGGDDSGDGHSEKADDEGVYGVDN--HADEQ 57

[Close]
BLAST of Carg09175 vs. TrEMBL
Match: tr|A0A2P5RDH6|A0A2P5RDH6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD18216 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-04
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 1  MESSQNVGVSEECHSSESGWTMYIGSPV---DDSSDGDE---DNDVEYGKNRVFHANHQ 54
          MESS+  G  EECHSSESGWTMYIGSP+   DDS DG     D++  YG +   HA+ Q
Sbjct: 1  MESSKIYGGIEECHSSESGWTMYIGSPIHGGDDSGDGHSEKADDEGVYGVDN--HADEQ 57

The following BLAST results are available for this feature:
BLAST of Carg09175 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933470.18.1e-51100.00uncharacterized protein LOC111440875 [Cucurbita moschata][more]
XP_023531634.14.9e-4895.80uncharacterized protein LOC111793816 [Cucurbita pepo subsp. pepo][more]
XP_022974149.11.4e-4789.08uncharacterized protein LOC111472737 [Cucurbita maxima][more]
XP_022135291.13.6e-1948.28uncharacterized protein LOC111007289 isoform X1 [Momordica charantia][more]
XP_022135292.17.6e-1747.79uncharacterized protein LOC111007289 isoform X2 [Momordica charantia][more]
BLAST of Carg09175 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg09175 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg09175 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUQ4|A0A0A0LUQ4_CUCSA1.1e-0647.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014530 PE=4 SV=1[more]
tr|A0A1Q3CCH0|A0A1Q3CCH0_CEPFO1.3e-0472.97Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21233 PE=4... [more]
tr|A0A1U8NBQ4|A0A1U8NBQ4_GOSHI6.4e-0455.93acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Gossypium ... [more]
tr|A0A0D2T3R8|A0A0D2T3R8_GOSRA6.4e-0455.93Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G201100 PE=4 ... [more]
tr|A0A2P5RDH6|A0A2P5RDH6_GOSBA6.4e-0455.93Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD18216 PE=4 SV... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09175-RACarg09175-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..120
NoneNo IPR availablePANTHERPTHR33347:SF13SUBFAMILY NOT NAMEDcoord: 5..119
NoneNo IPR availablePANTHERPTHR33347FAMILY NOT NAMEDcoord: 5..119

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg09175Cla019024Watermelon (97103) v1carwmB0594
Carg09175Csa1G014530Cucumber (Chinese Long) v2carcuB0620
Carg09175ClCG06G015330Watermelon (Charleston Gray)carwcgB0581
Carg09175CSPI01G03150Wild cucumber (PI 183967)carcpiB0626
Carg09175CmaCh10G002720Cucurbita maxima (Rimu)carcmaB0827
Carg09175CmoCh11G002390Cucurbita moschata (Rifu)carcmoB0808
Carg09175CmoCh10G002910Cucurbita moschata (Rifu)carcmoB0805
Carg09175Lsi06G013770Bottle gourd (USVL1VR-Ls)carlsiB540
Carg09175Cp4.1LG04g14400Cucurbita pepo (Zucchini)carcpeB0847
Carg09175CsGy1G003120Cucumber (Gy14) v2carcgybB0592
Carg09175CsaV3_1G003210Cucumber (Chinese Long) v3carcucB0627
Carg09175Cla97C06G124850Watermelon (97103) v2carwmbB0623
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg09175Carg17888Silver-seed gourdcarcarB459
The following block(s) are covering this gene:
GeneOrganismBlock
Carg09175Silver-seed gourdcarcarB538
Carg09175Silver-seed gourdcarcarB416
Carg09175Silver-seed gourdcarcarB496
Carg09175Cucumber (Gy14) v2carcgybB0594
Carg09175Cucumber (Gy14) v2carcgybB0595
Carg09175Cucumber (Gy14) v2carcgybB0598
Carg09175Cucumber (Gy14) v1carcgyB0669
Carg09175Cucumber (Gy14) v1carcgyB0671
Carg09175Cucumber (Gy14) v1carcgyB0673
Carg09175Cucumber (Gy14) v1carcgyB0676
Carg09175Cucurbita maxima (Rimu)carcmaB0830
Carg09175Cucurbita maxima (Rimu)carcmaB0832
Carg09175Cucurbita maxima (Rimu)carcmaB0833
Carg09175Cucurbita maxima (Rimu)carcmaB0834
Carg09175Cucurbita maxima (Rimu)carcmaB0836
Carg09175Cucurbita moschata (Rifu)carcmoB0810
Carg09175Cucurbita moschata (Rifu)carcmoB0811
Carg09175Cucurbita moschata (Rifu)carcmoB0812
Carg09175Cucurbita moschata (Rifu)carcmoB0814
Carg09175Cucurbita pepo (Zucchini)carcpeB0840
Carg09175Cucurbita pepo (Zucchini)carcpeB0841
Carg09175Cucurbita pepo (Zucchini)carcpeB0845
Carg09175Cucurbita pepo (Zucchini)carcpeB0846
Carg09175Wild cucumber (PI 183967)carcpiB0628
Carg09175Wild cucumber (PI 183967)carcpiB0629
Carg09175Wild cucumber (PI 183967)carcpiB0632
Carg09175Cucumber (Chinese Long) v2carcuB0622
Carg09175Cucumber (Chinese Long) v2carcuB0623
Carg09175Cucumber (Chinese Long) v2carcuB0626
Carg09175Cucumber (Chinese Long) v3carcucB0629
Carg09175Cucumber (Chinese Long) v3carcucB0630
Carg09175Cucumber (Chinese Long) v3carcucB0633
Carg09175Bottle gourd (USVL1VR-Ls)carlsiB538
Carg09175Bottle gourd (USVL1VR-Ls)carlsiB539
Carg09175Melon (DHL92) v3.5.1carmeB0597
Carg09175Melon (DHL92) v3.5.1carmeB0598
Carg09175Melon (DHL92) v3.5.1carmeB0599
Carg09175Melon (DHL92) v3.6.1carmedB0604
Carg09175Melon (DHL92) v3.6.1carmedB0605
Carg09175Melon (DHL92) v3.6.1carmedB0606
Carg09175Watermelon (Charleston Gray)carwcgB0579
Carg09175Watermelon (Charleston Gray)carwcgB0580
Carg09175Watermelon (97103) v1carwmB0591
Carg09175Watermelon (97103) v1carwmB0592
Carg09175Watermelon (97103) v2carwmbB0621
Carg09175Wax gourdcarwgoB0704
Carg09175Wax gourdcarwgoB0707