Carg16519 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16519
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box domain containing protein
Location	Cucurbita_argyrosperma_scaffold_089 : 119471 .. 123480 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGCAACCGCCATTTCCTTAGCAATGTCGGCCAGATCACAATGCTAATCGCCGATCGCGCCATCCTCTCCAAAACCCTTTTCGCCTCTTGAGCTTTGAATTTATGGCGCAAAGTGACTTCCTCCGGCCGCCGATGAAAGCAAGGAAGAAGAAGAAGAAGAAGCGAGAGAGTGTCTCGGATGAACAAGGGCAACAAAATGGAACCCGTAATGAACTTCTCCAAGATCCTTTCGAGGTTTTAGGTCCTGATCTATTAATGACGATACTTAGCTACGTTGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACGCCGTGGCTTCCAGCGATCGCCTATGGAATTCGAAGGTCAGCGTCTTCACTCCGTTAATTCGTTTATGTTATGGTGCTTGTGATTAAATTCGATTCTCTGGAATTGGATTTTGGTATTTGATCTTCTGTTGGTTGTGGTAATTGTTTTCCCTGTGCAAATGGAGTCGTTCACTCGTTTTTGCAATTAGAAAAATCGTTTCGTTTGTGTCGAACCGAGGTCCTTATTCTGTGGCTTTCACTTCTATTTTGTTTCACGTACTTATCTTCTCTCTCGTCGGATTTGAATCTTAAATTTATGTAGCCTGTGGTTTTTTCTGCTGAATTCAGCTTTTTCTACCTAGATAGATCATAACAAACTGCAGTTAGTGGATTTTTTGTTCGATCTCTCATGTTAATTTGAATTATTTCTCTCGGTTGTTGAAAACTCATCTTCAAATCATTTCCTCGACTCTTTCTAAGAGTGATATCCACATTTCTATGGTAAAAAGTGTTCTAAGCCTGTTAAAATTATGAGGTAGATAATCAAAATCGATGCAAGTGTTTCTGGGAGAAGTATGTTAAAAAAACAAGTGCTGTACTTACTAGAAAAGTCATTCCAAGATGCGGAAGCTTGACATCATGAAATCCTTAGGAGAAATTCTGAGGTTATCCTATCTTGGTTTCACCCTTCGATAGATACGAAATTGTATGTGCATAGTTTTGACCTATATCCGTCTCTATGTTCCTGCCCAGAAGGTGTGTGTATTTTACAACACAATGTCAAGTGCTTGTGTAGGTGTGTTCGAAAGATGCATTGTAGATTATTTTCTAAAATTCATGTCTTCTTTTAAGCTTTTAGAAAATATTTGGAATTTGAATATACGTTTTAACTTATTTGTTTAGATGCAAATATTAGATGTTATATGAACAAGGATTGAAGTTGAAGCCAAGAAATTCACATCCTTCTTTCTGGATAGCTCATTCCTGGTTATGCCAGGGGATAGTTATGACTGCCTGTCATGTGTATGTTATTAGACACTGGGATAGATGATTTAAAATTCTACAAATTTTAAAGGGTGTAGCTGCAAAAAAACTAACGTTCTTTACTGTTTACTGTAAAATTGAACATTTGGTAAGCAAGTTTATTGTATTTTCTCTTAGTGCATGGAACTGTGGCTCGGGAAAGCACATATCCCTAGATTGGCACGAACCCGAAGTTTTTCAAGACTGGCTGCCTATTCGTTATCCATCATGGATGGCAAACGAGTTAAGTTTCTCTCTCCACCCCCAAGCAATAGTTTCGGGAGTATGTCGTTCCATATACTTAAATATGTGTGTTACTCCATGTATAGTCGTGTGAACGCAGTTGGGATGACAAAGTGCATCTACTGAATCTCGTCATCAATAATTTAGAAAAAAGAATATGTTCTACACATGTACTCCCAAGCATGGCATAGTGAGAAGCATGTATTACTTTGATATCGTTTTTCATGGGCTTAACTTCTTGTATCAGACTCGCATTATGAGGGAGGATTTATGTGCTCATGCCTGGCAATTTCACTTCAATAAGGTATGTTGGTCTTTTATGCAGTCATCAAACATTGTTTCTGGACGCTAACCATCATGTAATGAATTAGATAATATGAAACCTGGTTAGGAGAGGAGGATATTGAAGTTCTAAATTAACTGGATGAATTCTTTTACGTTTGTGTTTTATGATTGATTAAACCTGCTTATGTTATTACATATTTTCTACACATTTGAGTACCTTTTATCTTTTCTACACCATTCCTTAGGCATCTTACGAAGATTCATGGTATCTACATCTAATTTTATCCTCGTCTTTCATAATTTATTTTAAGTGTGCCCTACTCACTGGGAGAGGTTAGATGGCTGGTGGTGGATATTTTAGCAATACAAATTTCATGGATGATCCTCACAGCTTAGATAGCCATGCTAGTGATTGTGTTAAAAAAAAACATCTAACATGCACCCCAAAAAAAAAAAAAAAACTCCCATACCACTTGGATTTGGAACTGTCTATGGAGCATGATAATCGTATATAATGCGTCTATTTTCAAATTTGTGTGGTGTCATGGCTGTGTCTATGTTTCTTCGTGAAATGTCTATGCTGGTACTCACAATATTGATGGCCGTACTAGTGATTTAGAGGGTATATCCCAAAAGGTGTCTACTGCTTGATCCTGAATACCTTTTGAGAAGTACAATTGCATGGTTCTATTATCATACTCGAGTGCATGCTGGTTTTAGTCCAAGCTACCAATTTTCTGCTTAGATGCAAATGTATCTAAAGTTATAATGTGCAACCGACTGAACATCCACGTCCAAATCTTTAAGGCACCTTTCCTGATGAGGGGCAAATTGATTCATAATGTCTGGTGAGTTAATTTCTGTTCCCTTCAGGAAGCTCCCATATACTGGCGGAATCTTGATCCGTATTGGCAAGGCAGCCACCCTCTGATGCGCCGATATTTCCATCCCGATGGGAGCCAAACTGCTGATCCTGATGATAGAGTATGGGGTGGGCATGAATGCTGCTTTTCCACGGTTACAAGTTTCATCGGCGATGGGGAGATCAGAGAACACTATGTGAGGATAAACAGATGGCCAAGAATGTTTGTGTCAAGGAACGAAGATTGGAGCTGGAAGATGTCGAATCATTTCACCTCGTACTCAAGCATAGCCGATGCCGACAAGGATAGCGGGACGGGGCCACTTTAACAGCTGGTGAGAAAATGCTTGTTTGCTCTTTCTAGTAGAGGCTGTCGCTTTTCTGTTAACAGAATTTTTGGTAGTATGGGAAAGGAATTGGTGTTGGGTTAGGATCACATTTTCTTTTGATCCTCTGCACAGAATTGGGAGTGGACTTTGGTTTTTTCCTGGGAAAATGTATGTATATGTTTCTTACTAGCAAGCATCAGGATTTGAAATTAATAAGTTAAGTGAATTTGTTTTTCTCAAGTCATATACTTGTTAATATCACTTGTCATTCAGATATACATTAAACTTTTGGGGCCTATGTTATGTCTGGAACCTTAACTCGTCTTAAATATTAATTTTAGCATTATAGAGGTTTCTTAATAAGTCATGCCTATATTCATGTATATGTTATATACAATATTCAAGCCATTATTAACACGAGTAGTCAAAAGTTAAAGAGTTCTCCCCTGCCGCTGCTCGTACAGGCGCTTGTATATTCCGGCCAACTTGTCGGCGTCCGGCAGGTTATCTCTGATCAGAGCAGCTTTCTTTAAGTTATGGGTCCAAGCGTACAAGCCAGGGAATTCATCGCATGCACAATTCCTCCGAACTCCAAATCCAGGGTGCCAATCTCCTCTCCGGTGAAGAATTTCTTGTCGCCAAGGCATTGTTCTTAGGAATTCGATCGCCTCTGCCCTAGCTTTCTTCACCGCTGCGGGAACCGATTAATCAATGTTTAGTTAGATACTCTAGAAATTTAATTCACCACATAGACACAAACTTATAATTGTTCTAATTAAGCCGATTTGAGTATAAAAAAATACGTTCAAACTCAACTAATCTCACGAGACAACAGTGTATCCTTACCTCAATTGGGCCGTGCGGCTGTGCAGCGTGGACGGGCAGAGGTTGGGGATCATAAAGAAGAGGCAAGTCCCTGACATTGATGTATTTGGATTGGTTAAACCCTCCACACTGAATAAC

mRNA sequence

TTTTGCAACCGCCATTTCCTTAGCAATGTCGGCCAGATCACAATGCTAATCGCCGATCGCGCCATCCTCTCCAAAACCCTTTTCGCCTCTTGAGCTTTGAATTTATGGCGCAAAGTGACTTCCTCCGGCCGCCGATGAAAGCAAGGAAGAAGAAGAAGAAGAAGCGAGAGAGTGTCTCGGATGAACAAGGGCAACAAAATGGAACCCGTAATGAACTTCTCCAAGATCCTTTCGAGGTTTTAGGTCCTGATCTATTAATGACGATACTTAGCTACGTTGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACGCCGTGGCTTCCAGCGATCGCCTATGGAATTCGAAGACTCGCATTATGAGGGAGGATTTATGTGCTCATGCCTGGCAATTTCACTTCAATAAGGAAGCTCCCATATACTGGCGGAATCTTGATCCGTATTGGCAAGGCAGCCACCCTCTGATGCGCCGATATTTCCATCCCGATGGGAGCCAAACTGCTGATCCTGATGATAGAGTATGGGGTGGGCATGAATGCTGCTTTTCCACGGTTACAAGTTTCATCGGCGATGGGGAGATCAGAGAACACTATGTGAGGATAAACAGATGGCCAAGAATGTTTGTGTCAAGGAACGAAGATTGGAGCTGGAAGATGTCGAATCATTTCACCTCGTACTCAAGCATAGCCGATGCCGACAAGGATAGCGGGACGGGGCCACTTTAACAGCTGGTGAGAAAATGCTTGTTTGCTCTTTCTAGTAGAGGCTGTCGCTTTTCTGTTAACAGAATTTTTGGTAGTATGGGAAAGGAATTGGTGTTGGGTTAGGATCACATTTTCTTTTGATCCTCTGCACAGAATTGGGAGTGGACTTTGGTTTTTTCCTGGGAAAATGTATGTATATGTTTCTTACTAGCAAGCATCAGGATTTGAAATTAATAAGTTAAGTGAATTTGTTTTTCTCAAGTCATATACTTGTTAATATCACTTGTCATTCAGATATACATTAAACTTTTGGGGCCTATGTTATGTCTGGAACCTTAACTCGTCTTAAATATTAATTTTAGCATTATAGAGGTTTCTTAATAAGTCATGCCTATATTCATGTATATGTTATATACAATATTCAAGCCATTATTAACACGAGTAGTCAAAAGTTAAAGAGTTCTCCCCTGCCGCTGCTCGTACAGGCGCTTGTATATTCCGGCCAACTTGTCGGCGTCCGGCAGGTTATCTCTGATCAGAGCAGCTTTCTTTAAGTTATGGGTCCAAGCGTACAAGCCAGGGAATTCATCGCATGCACAATTCCTCCGAACTCCAAATCCAGGGTGCCAATCTCCTCTCCGGTGAAGAATTTCTTGTCGCCAAGGCATTGTTCTTAGGAATTCGATCGCCTCTGCCCTAGCTTTCTTCACCGCTCAATTGGGCCGTGCGGCTGTGCAGCGTGGACGGGCAGAGGTTGGGGATCATAAAGAAGAGGCAAGTCCCTGACATTGATGTATTTGGATTGGTTAAACCCTCCACACTGAATAAC

Coding sequence (CDS)

ATGGCGCAAAGTGACTTCCTCCGGCCGCCGATGAAAGCAAGGAAGAAGAAGAAGAAGAAGCGAGAGAGTGTCTCGGATGAACAAGGGCAACAAAATGGAACCCGTAATGAACTTCTCCAAGATCCTTTCGAGGTTTTAGGTCCTGATCTATTAATGACGATACTTAGCTACGTTGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACGCCGTGGCTTCCAGCGATCGCCTATGGAATTCGAAGACTCGCATTATGAGGGAGGATTTATGTGCTCATGCCTGGCAATTTCACTTCAATAAGGAAGCTCCCATATACTGGCGGAATCTTGATCCGTATTGGCAAGGCAGCCACCCTCTGATGCGCCGATATTTCCATCCCGATGGGAGCCAAACTGCTGATCCTGATGATAGAGTATGGGGTGGGCATGAATGCTGCTTTTCCACGGTTACAAGTTTCATCGGCGATGGGGAGATCAGAGAACACTATGTGAGGATAAACAGATGGCCAAGAATGTTTGTGTCAAGGAACGAAGATTGGAGCTGGAAGATGTCGAATCATTTCACCTCGTACTCAAGCATAGCCGATGCCGACAAGGATAGCGGGACGGGGCCACTTTAA

Protein sequence

MAQSDFLRPPMKARKKKKKKRESVSDEQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDARSVALSLLVSRSWYAVASSDRLWNSKTRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGPL

Homology

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BLAST of Carg16519 vs. NCBI nr
Match: XP_022924581.1 (uncharacterized protein LOC111432022 [Cucurbita moschata])

HSP 1 Score: 397.1 bits (1019), Expect = 3.6e-107
Identity = 203/245 (82.86%), Postives = 203/245 (82.86%), Query Frame = 0


Query: 1   MAQSDFLRPPMKAXXXXXXXXXXXXXEQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDA 60
           MAQSDFLRPPMKA   XXXXXX    EQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDA
Sbjct: 1   MAQSDFLRPPMKA-RKXXXXXXSVSDEQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDA 60

Query: 61  RSVALSLLVSRSWYAVASSDRLWNSK---------------------------------- 120
           RSVALSLLVSRSWYAVASSDRLWNSK                                  
Sbjct: 61  RSVALSLLVSRSWYAVASSDRLWNSKCMELWLGKAHIPRLARTRSFSRLAAYSLSIMDGK 120

Query: 121 -TRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWG 180
            TRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWG
Sbjct: 121 RTRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWG 180

Query: 181 GHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDS 211
           GHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDS
Sbjct: 181 GHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDS 240

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BLAST of Carg16519 vs. NCBI nr
Match: XP_022980380.1 (uncharacterized protein LOC111479766 [Cucurbita maxima])

HSP 1 Score: 394.0 bits (1011), Expect = 3.1e-106
Identity = 195/245 (79.59%), Postives = 197/245 (80.41%), Query Frame = 0


Query: 1   MAQSDFLRPPMKAXXXXXXXXXXXXXEQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDA 60
           MAQSDFLRPPMKA             EQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDA
Sbjct: 1   MAQSDFLRPPMKA--RKKKKRESGSDEQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDA 60

Query: 61  RSVALSLLVSRSWYAVASSDRLWNSK---------------------------------- 120
           RSVALSLLVSRSWYAVASSDRLW+SK                                  
Sbjct: 61  RSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLARTRSFSRLAAYSLSIMDGK 120

Query: 121 -TRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWG 180
            TRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWG
Sbjct: 121 RTRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWG 180

Query: 181 GHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDS 211
           GHECCFSTVTSFIGDGE+REHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDS
Sbjct: 181 GHECCFSTVTSFIGDGEMREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDS 240

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BLAST of Carg16519 vs. NCBI nr
Match: XP_023526828.1 (uncharacterized protein LOC111790211 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.9 bits (995), Expect = 2.2e-104
Identity = 192/245 (78.37%), Postives = 195/245 (79.59%), Query Frame = 0


Query: 1   MAQSDFLRPPMKAXXXXXXXXXXXXXEQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDA 60
           MAQSDFLRPP KA             EQGQ+NG RNELLQDPFEVLGPDLLMTILSYVDA
Sbjct: 1   MAQSDFLRPPKKA--RKKKKRESVLDEQGQRNGIRNELLQDPFEVLGPDLLMTILSYVDA 60

Query: 61  RSVALSLLVSRSWYAVASSDRLWNSK---------------------------------- 120
           RSVALSLLVSRSWYAVASSDRLW+SK                                  
Sbjct: 61  RSVALSLLVSRSWYAVASSDRLWSSKCMELWLRKAHIPRLARTRSFSRLAAYSLSIMDGK 120

Query: 121 -TRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWG 180
            TRIMREDLCAHAWQFHFNKEAP+YWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWG
Sbjct: 121 RTRIMREDLCAHAWQFHFNKEAPMYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWG 180

Query: 181 GHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDS 211
           GHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDS
Sbjct: 181 GHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDS 240

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BLAST of Carg16519 vs. NCBI nr
Match: XP_004134025.1 (PREDICTED: uncharacterized protein LOC101220252 isoform X2 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 2.5e-95
Identity = 177/212 (83.49%), Postives = 188/212 (88.68%), Query Frame = 0


Query: 1   MAQSDFLRPPMK-AXXXXXXXXXXXXXEQGQQNG-TRNELLQDPFEVLGPDLLMTILSYV 60
           MAQSDFL    +    XXXXXX     E+GQQN  TRN LLQDPFEVLG DLL+ ILSY+
Sbjct: 1   MAQSDFLGGGARWKSRXXXXXXETVSDERGQQNSKTRNPLLQDPFEVLGSDLLLAILSYL 60

Query: 61  DARSVALSLLVSRSWYAVASSDRLWNSKTRIMREDLCAHAWQFHFNKEAPIYWRNLDPYW 120
           DARSVALSL VSRSWYAVASSDRLW+SKTRIMREDLC HAWQFHFNKEAP+YWR+LDPYW
Sbjct: 61  DARSVALSLPVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYW 120

Query: 121 QGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTSFIGDGEIREHYVRINRWPRMFV 180
           QGSHPLMRRYFHPDG+QTADPDDRVWGGHE CFSTVTSF+GDGEIREHYVRINRWPRMFV
Sbjct: 121 QGSHPLMRRYFHPDGTQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFV 180

Query: 181 SRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 211
           SRNEDWSW+MSNHFTSYSSIAD +K  GTGPL
Sbjct: 181 SRNEDWSWRMSNHFTSYSSIADPEKTGGTGPL 212

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BLAST of Carg16519 vs. NCBI nr
Match: XP_008438424.1 (PREDICTED: uncharacterized protein LOC103483521 isoform X2 [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 3.5e-94
Identity = 162/181 (89.50%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 30  QQNGTRNELLQDPFEVLGPDLLMTILSYVDARSVALSLLVSRSWYAVASSDRLWNSKTRI 89
           Q   T N +LQDPFEVLG DLLM ILSY+DARSVALSLLVSRSWYAVASSDRLW+SKTRI
Sbjct: 39  QNRRTGNPILQDPFEVLGSDLLMIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRI 98

Query: 90  MREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHEC 149
           MREDLC HAWQFHFNKEAP+YWR+LDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHE 
Sbjct: 99  MREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHES 158

Query: 150 CFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGP 209
           CFSTVTSF+GDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD DK  GTGP
Sbjct: 159 CFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGP 218

Query: 210 L 211
           L
Sbjct: 219 L 219

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BLAST of Carg16519 vs. TrEMBL
Match: tr|A0A1S3AW05|A0A1S3AW05_CUCME (uncharacterized protein LOC103483521 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483521 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 2.3e-94
Identity = 162/181 (89.50%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 30  QQNGTRNELLQDPFEVLGPDLLMTILSYVDARSVALSLLVSRSWYAVASSDRLWNSKTRI 89
           Q   T N +LQDPFEVLG DLLM ILSY+DARSVALSLLVSRSWYAVASSDRLW+SKTRI
Sbjct: 39  QNRRTGNPILQDPFEVLGSDLLMIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRI 98

Query: 90  MREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHEC 149
           MREDLC HAWQFHFNKEAP+YWR+LDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHE 
Sbjct: 99  MREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHES 158

Query: 150 CFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGP 209
           CFSTVTSF+GDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD DK  GTGP
Sbjct: 159 CFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGP 218

Query: 210 L 211
           L
Sbjct: 219 L 219

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BLAST of Carg16519 vs. TrEMBL
Match: tr|A0A0A0L471|A0A0A0L471_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133360 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 3.5e-90
Identity = 177/247 (71.66%), Postives = 188/247 (76.11%), Query Frame = 0


Query: 1   MAQSDFLRPPMK-AXXXXXXXXXXXXXEQGQQNG-TRNELLQDPFEVLGPDLLMTILSYV 60
           MAQSDFL    +    XXXXXX     E+GQQN  TRN LLQDPFEVLG DLL+ ILSY+
Sbjct: 1   MAQSDFLGGGARWKSRXXXXXXETVSDERGQQNSKTRNPLLQDPFEVLGSDLLLAILSYL 60

Query: 61  DARSVALSLLVSRSWYAVASSDRLWNSK-------------------------------- 120
           DARSVALSL VSRSWYAVASSDRLW+SK                                
Sbjct: 61  DARSVALSLPVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLAQSRGLPKLAAYSLSVMD 120

Query: 121 ---TRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRV 180
              TRIMREDLC HAWQFHFNKEAP+YWR+LDPYWQGSHPLMRRYFHPDG+QTADPDDRV
Sbjct: 121 GKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGTQTADPDDRV 180

Query: 181 WGGHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADK 211
           WGGHE CFSTVTSF+GDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD +K
Sbjct: 181 WGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYSSIADPEK 240

[Close]

BLAST of Carg16519 vs. TrEMBL
Match: tr|A0A1S3AWZ4|A0A1S3AWZ4_CUCME (uncharacterized protein LOC103483521 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483521 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 5.1e-89
Identity = 162/216 (75.00%), Postives = 169/216 (78.24%), Query Frame = 0


Query: 30  QQNGTRNELLQDPFEVLGPDLLMTILSYVDARSVALSLLVSRSWYAVASSDRLWNSK--- 89
           Q   T N +LQDPFEVLG DLLM ILSY+DARSVALSLLVSRSWYAVASSDRLW+SK   
Sbjct: 39  QNRRTGNPILQDPFEVLGSDLLMIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKCLE 98

Query: 90  --------------------------------TRIMREDLCAHAWQFHFNKEAPIYWRNL 149
                                           TRIMREDLC HAWQFHFNKEAP+YWR+L
Sbjct: 99  LWLGKAHIPRLAQSRGLPKLAAYSLSIMDGKRTRIMREDLCDHAWQFHFNKEAPVYWRDL 158

Query: 150 DPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTSFIGDGEIREHYVRINRWP 209
           DPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHE CFSTVTSF+GDGEIREHYVRINRWP
Sbjct: 159 DPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWP 218

Query: 210 RMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 211
           RMFVSRNEDWSW+MSNHFTSYSSIAD DK  GTGPL
Sbjct: 219 RMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL 254

[Close]

BLAST of Carg16519 vs. TrEMBL
Match: tr|A0A2N9J216|A0A2N9J216_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58365 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.9e-72
Identity = 124/174 (71.26%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 37  ELLQDPFEVLGPDLLMTILSYVDARSVALSLLVSRSWYAVASSDRLWNSKTRIMREDLCA 96
           E  +DP EV G D+++ ILS +DARSVAL LLVSR+W+AVASSDRLW  K RIM++DLC 
Sbjct: 48  EETKDPLEVFGTDIMLKILSNLDARSVALCLLVSRAWHAVASSDRLWAPKNRIMKDDLCD 107

Query: 97  HAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTS 156
           H W+FHFNK AP YWRNLDPYW+G+   MRRYFHPDGSQ+ADP D+VWGGHECC+ TVTS
Sbjct: 108 HVWEFHFNKAAPEYWRNLDPYWKGTGRPMRRYFHPDGSQSADPGDKVWGGHECCYLTVTS 167

Query: 157 FIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 211
            +G+G+IREHYVRINRWPRM VSR +DWSW++SN+  SYSSI DADK+ GTGPL
Sbjct: 168 IVGEGKIREHYVRINRWPRMSVSRKQDWSWELSNYLYSYSSIPDADKEGGTGPL 221

[Close]

BLAST of Carg16519 vs. TrEMBL
Match: tr|A0A2P2KYG2|A0A2P2KYG2_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.9e-72
Identity = 125/173 (72.25%), Postives = 143/173 (82.66%), Query Frame = 0


Query: 38  LLQDPFEVLGPDLLMTILSYVDARSVALSLLVSRSWYAVASSDRLWNSKTRIMREDLCAH 97
           LLQDP EVLG DL+M I S VDARSVALSL+VSRSW+ VA SD LW+ K RI R+DLC H
Sbjct: 83  LLQDPLEVLGRDLMMKIFSNVDARSVALSLVVSRSWHGVACSDSLWSLKNRITRDDLCDH 142

Query: 98  AWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTSF 157
            W+FHF K AP+YWRNLDPYW+G+ PLMRRYFHPDGS TAD  DRVWGGHECC+S VTSF
Sbjct: 143 VWEFHFTKTAPVYWRNLDPYWKGTGPLMRRYFHPDGSLTADTGDRVWGGHECCYSIVTSF 202

Query: 158 IGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 211
           +G+G+IREHYVR+NRWP+M + R EDWSW+MSN    YSSI DA K+ GTGPL
Sbjct: 203 VGNGKIREHYVRVNRWPQMTIRRKEDWSWEMSNSIYCYSSIPDAHKEGGTGPL 255

The following BLAST results are available for this feature:

BLAST of Carg16519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924581.1	3.6e-107	82.86	uncharacterized protein LOC111432022 [Cucurbita moschata]	[more]
XP_022980380.1	3.1e-106	79.59	uncharacterized protein LOC111479766 [Cucurbita maxima]	[more]
XP_023526828.1	2.2e-104	78.37	uncharacterized protein LOC111790211 [Cucurbita pepo subsp. pepo]	[more]
XP_004134025.1	2.5e-95	83.49	PREDICTED: uncharacterized protein LOC101220252 isoform X2 [Cucumis sativus]	[more]
XP_008438424.1	3.5e-94	89.50	PREDICTED: uncharacterized protein LOC103483521 isoform X2 [Cucumis melo]	[more]

BLAST of Carg16519 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg16519 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16519 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AW05\|A0A1S3AW05_CUCME	2.3e-94	89.50	uncharacterized protein LOC103483521 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0L471\|A0A0A0L471_CUCSA	3.5e-90	71.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133360 PE=4 SV=1	[more]
tr\|A0A1S3AWZ4\|A0A1S3AWZ4_CUCME	5.1e-89	75.00	uncharacterized protein LOC103483521 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2N9J216\|A0A2N9J216_FAGSY	1.9e-72	71.26	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58365 PE=4 SV=1	[more]
tr\|A0A2P2KYG2\|A0A2P2KYG2_RHIMU	1.9e-72	72.25	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR001810	F-box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16519-RA	Carg16519-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 48..85 e-value: 2.4E-7 score: 30.4
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 28..84 e-value: 1.2E-10 score: 42.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 172..188 coord: 40..120

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16519	Cla021460	Watermelon (97103) v1	carwmB0223
Carg16519	Csa3G133360	Cucumber (Chinese Long) v2	carcuB0262
Carg16519	MELO3C006351	Melon (DHL92) v3.5.1	carmeB0240
Carg16519	ClCG05G003720	Watermelon (Charleston Gray)	carwcgB0226
Carg16519	CSPI03G11330	Wild cucumber (PI 183967)	carcpiB0266
Carg16519	Cucsa.256040	Cucumber (Gy14) v1	carcgyB0276
Carg16519	CmaCh06G012760	Cucurbita maxima (Rimu)	carcmaB0329
Carg16519	CmaCh14G018640	Cucurbita maxima (Rimu)	carcmaB0325
Carg16519	CmoCh06G012850	Cucurbita moschata (Rifu)	carcmoB0332
Carg16519	CmoCh14G019080	Cucurbita moschata (Rifu)	carcmoB0328
Carg16519	Lsi05G017950	Bottle gourd (USVL1VR-Ls)	carlsiB210
Carg16519	Cp4.1LG03g18360	Cucurbita pepo (Zucchini)	carcpeB0334
Carg16519	Cp4.1LG08g03070	Cucurbita pepo (Zucchini)	carcpeB0336
Carg16519	CsGy3G011360	Cucumber (Gy14) v2	carcgybB0251
Carg16519	MELO3C006351.2	Melon (DHL92) v3.6.1	carmedB0248
Carg16519	CsaV3_3G011440	Cucumber (Chinese Long) v3	carcucB0266
Carg16519	Cla97C05G084390	Watermelon (97103) v2	carwmbB0236
Carg16519	Bhi01G000016	Wax gourd	carwgoB0295

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16519	Carg06262	Silver-seed gourd	carcarB274

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16519	Melon (DHL92) v3.6.1	carmedB0246
Carg16519	Watermelon (Charleston Gray)	carwcgB0227
Carg16519	Watermelon (Charleston Gray)	carwcgB0228
Carg16519	Watermelon (97103) v1	carwmB0224
Carg16519	Watermelon (97103) v2	carwmbB0237
Carg16519	Watermelon (97103) v2	carwmbB0238
Carg16519	Wax gourd	carwgoB0290
Carg16519	Wax gourd	carwgoB0297
Carg16519	Silver-seed gourd	carcarB259
Carg16519	Silver-seed gourd	carcarB273
Carg16519	Silver-seed gourd	carcarB275
Carg16519	Cucumber (Gy14) v2	carcgybB0250
Carg16519	Cucumber (Gy14) v2	carcgybB0252
Carg16519	Cucumber (Gy14) v1	carcgyB0275
Carg16519	Cucurbita maxima (Rimu)	carcmaB0326
Carg16519	Cucurbita maxima (Rimu)	carcmaB0327
Carg16519	Cucurbita maxima (Rimu)	carcmaB0328
Carg16519	Cucurbita maxima (Rimu)	carcmaB0330
Carg16519	Cucurbita moschata (Rifu)	carcmoB0329
Carg16519	Cucurbita moschata (Rifu)	carcmoB0330
Carg16519	Cucurbita moschata (Rifu)	carcmoB0331
Carg16519	Cucurbita moschata (Rifu)	carcmoB0333
Carg16519	Cucurbita pepo (Zucchini)	carcpeB0331
Carg16519	Cucurbita pepo (Zucchini)	carcpeB0332
Carg16519	Cucurbita pepo (Zucchini)	carcpeB0333
Carg16519	Cucurbita pepo (Zucchini)	carcpeB0335
Carg16519	Wild cucumber (PI 183967)	carcpiB0265
Carg16519	Wild cucumber (PI 183967)	carcpiB0267
Carg16519	Cucumber (Chinese Long) v2	carcuB0261
Carg16519	Cucumber (Chinese Long) v2	carcuB0263
Carg16519	Cucumber (Chinese Long) v3	carcucB0265
Carg16519	Cucumber (Chinese Long) v3	carcucB0267
Carg16519	Bottle gourd (USVL1VR-Ls)	carlsiB209
Carg16519	Melon (DHL92) v3.5.1	carmeB0238