Carg14097 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14097
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Replication termination factor 2
Location	Cucurbita_argyrosperma_scaffold_097 : 809925 .. 811085 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCCGAAAAATCAACACCGTCTTCAGTTCTTCGTCCATTCTCCCGACCTCCAAATTCAATCCAAAATCGTAAACCTAGCACAAACATCGGCCCAATCCCTCGCGGATCTTAAGTTATCTCTTATCCTCAACACGCCTGCTTCACGGTTAGCCTCATCTTTCTACTTCACCCTAAATGGGAAACCTCTCCTCGATTCCGCCACAATTTCCAGTTCTCTAGTTCCCCCTCTGTCCACCTTGATTTTAAGAACCAGGGTCCTTGGGGGCGGTGGTGATGGCGGTGCAACCGGGGCCGAATCCCGTGACTGCTACCTTAAAATGTACGCAGAGAAGAAACCCGATAAGGTCGATCCTAACGAGCAGAGGCTATCCAAGTGGTTGAACTGCGCTCTTTCTAACGAGCCTTTGAGGGAACCTTGTGTGATCGATTGGCTTGGAAATATCTTCAACAAGGAGCCGCTGGTTCACGCGTTGCTGGAGAAGAAGCTGCCAAAAGGTTTCGGACATGTCAAGGGTTTGAAGGATATGATCAAGATAAATCTTTCGATGATTCCCGGTACAGAATCGCGTGGCAATGCGATCTCAGAGGCGAGGTTTCAATGCCCGATTACTGGGCTCGAGTTCAATGGTAAGTACAAATTTTTTGCTCTGAGAACTTGTGGACACGTGCTGAGTGCAAAGGCCTTGAAGGAGGTTAAATCTTCTTCCTGCCTTGTTTGTCATGCTGAGTTTATGGACAGAGATAAGTTTGTGATCAATGGGAGCGAGGAGGAGGTAGTAAGAATGAGGGAGAGGATGGAGGAAGAGAAAACGAAATCAAAGGAGAAGAAGACGAAGAAAGTGAGGACCGGGGAAGTGGGTATGAATGGAGATGTGAGTGTGGATTTGGCATCATCCCGTTTGTCTGGTAAAAAGCATGGCATTGAAGGTAAGGCACTGGGTAAGGTTTCAGCCAAGTCTGAGAAGCATGAGCGGCCAGATAGTGGAGTTCAGGTAAAGGTTGCGGCAAGTAATGGTGGTGTTAAGCGATTTAAAGCAGCAGACATGGCGCCTGCCAATGCTACCAAAGAAGTCTATGCTTCCATATTCACCTCATCTAGAAAGTCGGATTTTAAGGAGACATATTCTTGTAGATCTCTTCCCCTTGGTCGTAATTGA

mRNA sequence

ATGTATCCGAAAAATCAACACCGTCTTCAGTTCTTCGTCCATTCTCCCGACCTCCAAATTCAATCCAAAATCGTAAACCTAGCACAAACATCGGCCCAATCCCTCGCGGATCTTAAGTTATCTCTTATCCTCAACACGCCTGCTTCACGGTTAGCCTCATCTTTCTACTTCACCCTAAATGGGAAACCTCTCCTCGATTCCGCCACAATTTCCAGTTCTCTAGTTCCCCCTCTGTCCACCTTGATTTTAAGAACCAGGGTCCTTGGGGGCGGTGGTGATGGCGGTGCAACCGGGGCCGAATCCCGTGACTGCTACCTTAAAATGTACGCAGAGAAGAAACCCGATAAGGTCGATCCTAACGAGCAGAGGCTATCCAAGTGGTTGAACTGCGCTCTTTCTAACGAGCCTTTGAGGGAACCTTGTGTGATCGATTGGCTTGGAAATATCTTCAACAAGGAGCCGCTGGTTCACGCGTTGCTGGAGAAGAAGCTGCCAAAAGGTTTCGGACATGTCAAGGGTTTGAAGGATATGATCAAGATAAATCTTTCGATGATTCCCGGTACAGAATCGCGTGGCAATGCGATCTCAGAGGCGAGGTTTCAATGCCCGATTACTGGGCTCGAGTTCAATGGTAAGTACAAATTTTTTGCTCTGAGAACTTGTGGACACGTGCTGAGTGCAAAGGCCTTGAAGGAGGTTAAATCTTCTTCCTGCCTTGTTTGTCATGCTGAGTTTATGGACAGAGATAAGTTTGTGATCAATGGGAGCGAGGAGGAGGTAGTAAGAATGAGGGAGAGGATGGAGGAAGAGAAAACGAAATCAAAGGAGAAGAAGACGAAGAAAGTGAGGACCGGGGAAGTGGGTATGAATGGAGATGTGAGTGTGGATTTGGCATCATCCCGTTTGTCTGGTAAAAAGCATGGCATTGAAGGTAAGGCACTGGGTAAGGTTTCAGCCAAGTCTGAGAAGCATGAGCGGCCAGATAGTGGAGTTCAGGTAAAGGTTGCGGCAAGTAATGGTGGTGTTAAGCGATTTAAAGCAGCAGACATGGCGCCTGCCAATGCTACCAAAGAAGTCTATGCTTCCATATTCACCTCATCTAGAAAGTCGGATTTTAAGGAGACATATTCTTGTAGATCTCTTCCCCTTGGTCGTAATTGA

Coding sequence (CDS)

ATGTATCCGAAAAATCAACACCGTCTTCAGTTCTTCGTCCATTCTCCCGACCTCCAAATTCAATCCAAAATCGTAAACCTAGCACAAACATCGGCCCAATCCCTCGCGGATCTTAAGTTATCTCTTATCCTCAACACGCCTGCTTCACGGTTAGCCTCATCTTTCTACTTCACCCTAAATGGGAAACCTCTCCTCGATTCCGCCACAATTTCCAGTTCTCTAGTTCCCCCTCTGTCCACCTTGATTTTAAGAACCAGGGTCCTTGGGGGCGGTGGTGATGGCGGTGCAACCGGGGCCGAATCCCGTGACTGCTACCTTAAAATGTACGCAGAGAAGAAACCCGATAAGGTCGATCCTAACGAGCAGAGGCTATCCAAGTGGTTGAACTGCGCTCTTTCTAACGAGCCTTTGAGGGAACCTTGTGTGATCGATTGGCTTGGAAATATCTTCAACAAGGAGCCGCTGGTTCACGCGTTGCTGGAGAAGAAGCTGCCAAAAGGTTTCGGACATGTCAAGGGTTTGAAGGATATGATCAAGATAAATCTTTCGATGATTCCCGGTACAGAATCGCGTGGCAATGCGATCTCAGAGGCGAGGTTTCAATGCCCGATTACTGGGCTCGAGTTCAATGGTAAGTACAAATTTTTTGCTCTGAGAACTTGTGGACACGTGCTGAGTGCAAAGGCCTTGAAGGAGGTTAAATCTTCTTCCTGCCTTGTTTGTCATGCTGAGTTTATGGACAGAGATAAGTTTGTGATCAATGGGAGCGAGGAGGAGGTAGTAAGAATGAGGGAGAGGATGGAGGAAGAGAAAACGAAATCAAAGGAGAAGAAGACGAAGAAAGTGAGGACCGGGGAAGTGGGTATGAATGGAGATGTGAGTGTGGATTTGGCATCATCCCGTTTGTCTGGTAAAAAGCATGGCATTGAAGGTAAGGCACTGGGTAAGGTTTCAGCCAAGTCTGAGAAGCATGAGCGGCCAGATAGTGGAGTTCAGGTAAAGGTTGCGGCAAGTAATGGTGGTGTTAAGCGATTTAAAGCAGCAGACATGGCGCCTGCCAATGCTACCAAAGAAGTCTATGCTTCCATATTCACCTCATCTAGAAAGTCGGATTTTAAGGAGACATATTCTTGTAGATCTCTTCCCCTTGGTCGTAATTGA

Protein sequence

MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLNGKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKINLSMIPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAEFMDRDKFVINGSEEEVVRMRERMEEEKTKSKEKKTKKVRTGEVGMNGDVSVDLASSRLSGKKHGIEGKALGKVSAKSEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKEVYASIFTSSRKSDFKETYSCRSLPLGRN

Homology

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BLAST of Carg14097 vs. NCBI nr
Match: XP_022933589.1 (protein RTF2 homolog [Cucurbita moschata])

HSP 1 Score: 723.0 bits (1865), Expect = 5.3e-205
Identity = 382/386 (98.96%), Postives = 384/386 (99.48%), Query Frame = 0


Query: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60
           MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN
Sbjct: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60

Query: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120
           GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN
Sbjct: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGH+KGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           NLSM+PGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NLSMVPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLASS 300
           CHAEFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLASS
Sbjct: 241 CHAEFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLASS 300

Query: 301 RLSGKKHGIEGKALGKVSAKSEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKEVY 360
           RLSGKKHGIEGKALGKVSAK EKHERPDSGVQVKVAASNG VKRFKAADMAPANATKEVY
Sbjct: 301 RLSGKKHGIEGKALGKVSAKPEKHERPDSGVQVKVAASNGAVKRFKAADMAPANATKEVY 360

Query: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 387
           ASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 386

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BLAST of Carg14097 vs. NCBI nr
Match: XP_023005959.1 (protein RTF2 homolog isoform X1 [Cucurbita maxima] >XP_023005964.1 protein RTF2 homolog isoform X2 [Cucurbita maxima] >XP_023005967.1 protein RTF2 homolog isoform X3 [Cucurbita maxima])

HSP 1 Score: 710.3 bits (1832), Expect = 3.6e-201
Identity = 373/386 (96.63%), Postives = 376/386 (97.41%), Query Frame = 0


Query: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60
           MYPKNQHRLQFFV SPDLQIQSKIVNLAQTSAQSLADLKLSL+LN PASRLASSFYFTLN
Sbjct: 1   MYPKNQHRLQFFVRSPDLQIQSKIVNLAQTSAQSLADLKLSLLLNAPASRLASSFYFTLN 60

Query: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120
           GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN
Sbjct: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKE LVHALLEKKLPKGFGH+KGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           NLSMIPGTESRGN ISEARFQCPITGLEFNGKYKFFALR CGHVLSAKALKEVKSSSCLV
Sbjct: 181 NLSMIPGTESRGNEISEARFQCPITGLEFNGKYKFFALRACGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLASS 300
           CHAEFMDRDKFVINGSEEEVVRMRERM  XXXXXXXXXXX VRTGEVGMNGDVSVDLASS
Sbjct: 241 CHAEFMDRDKFVINGSEEEVVRMRERMEEXXXXXXXXXXXKVRTGEVGMNGDVSVDLASS 300

Query: 301 RLSGKKHGIEGKALGKVSAKSEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKEVY 360
           RLSGKKHGIEGKALGK+SAK EKHERPDSGVQVKVAASNG VKRFKAADMAPANATKEVY
Sbjct: 301 RLSGKKHGIEGKALGKISAKPEKHERPDSGVQVKVAASNGAVKRFKAADMAPANATKEVY 360

Query: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 387
           ASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 386

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BLAST of Carg14097 vs. NCBI nr
Match: XP_023531451.1 (protein RTF2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 709.5 bits (1830), Expect = 6.1e-201
Identity = 376/386 (97.41%), Postives = 379/386 (98.19%), Query Frame = 0


Query: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60
           MYPKNQHRLQFFVHSPDLQIQS IVNLAQTSAQSLADLKLSL+L TPASRLASSFYFTLN
Sbjct: 1   MYPKNQHRLQFFVHSPDLQIQSTIVNLAQTSAQSLADLKLSLLLKTPASRLASSFYFTLN 60

Query: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120
           GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN
Sbjct: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKI 180
           EQRLSKWLNC+LSNEPLREPCVIDWLGNIFNKE LVHALLEKKLPKGFGH+KGLKDMIKI
Sbjct: 121 EQRLSKWLNCSLSNEPLREPCVIDWLGNIFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           NLSMIPGTESRGNAISEARFQCPITGLE NGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NLSMIPGTESRGNAISEARFQCPITGLESNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLASS 300
           CH EFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLA S
Sbjct: 241 CHTEFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLAPS 300

Query: 301 RLSGKKHGIEGKALGKVSAKSEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKEVY 360
           RLSGKKHGIEGKALGKVSAK EKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKEVY
Sbjct: 301 RLSGKKHGIEGKALGKVSAKPEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKEVY 360

Query: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 387
           ASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 386

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BLAST of Carg14097 vs. NCBI nr
Match: XP_022135450.1 (protein RTF2 homolog [Momordica charantia])

HSP 1 Score: 629.4 bits (1622), Expect = 8.0e-177
Identity = 327/386 (84.72%), Postives = 344/386 (89.12%), Query Frame = 0


Query: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60
           M+PKNQ RLQ FVHSPDLQIQSKI+NLA+TSAQ+L DLK SL+  T A R ASSFYFTLN
Sbjct: 1   MHPKNQQRLQIFVHSPDLQIQSKILNLARTSAQTLEDLKFSLLPQTLAPRSASSFYFTLN 60

Query: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120
           GKPLLDS  ++SSL+ PLSTLILRTR+ GGGGDGGATGAESRDCYL MYAEKKPDKVDPN
Sbjct: 61  GKPLLDSTPVTSSLISPLSTLILRTRIHGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGN+FNKE LV ALLEKKLPKGFGHVKGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVQALLEKKLPKGFGHVKGLKDMIKI 180

Query: 181 NLSMIPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           +LS IPGTES  NAIS  RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 SLSAIPGTESGSNAISGPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLASS 300
           CHAEF DRDK VINGSEEEV  +RERM     XXXXX    V+ GEVGMNGDVSVDLASS
Sbjct: 241 CHAEFKDRDKLVINGSEEEVAVLRERMEEEKSXXXXXRLKKVKNGEVGMNGDVSVDLASS 300

Query: 301 RLSGKKHGIEGKALGKVSAKSEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKEVY 360
           RLSGKKHGIE KA  KVSAK E++ERPD G+QVKVAA+NG VKRFKAADMAP NATKEVY
Sbjct: 301 RLSGKKHGIEVKASEKVSAKLERNERPDGGIQVKVAANNGAVKRFKAADMAPPNATKEVY 360

Query: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 387
           ASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 386

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BLAST of Carg14097 vs. NCBI nr
Match: XP_008444038.1 (PREDICTED: protein RTF2 homolog [Cucumis melo])

HSP 1 Score: 619.8 bits (1597), Expect = 6.4e-174
Identity = 334/388 (86.08%), Postives = 350/388 (90.21%), Query Frame = 0


Query: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60
           M+PKNQHRLQ F+HSPDLQIQSKIV+L QTSA++L DLK SL+  T ASR+ASS YFTLN
Sbjct: 1   MHPKNQHRLQIFLHSPDLQIQSKIVDLPQTSAKTLEDLKFSLLSETLASRVASSLYFTLN 60

Query: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120
           GKPLLDS TI  SL+PPLSTLILRTRVLGGGGDGGATGAESRDCYL MYAEKKPDKVDPN
Sbjct: 61  GKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKI 180
           EQRLSKWLNCALSNEPL EPCVIDWLGN+FNKE LV ALLEKKLPKGFGH+KGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           N SMIPGTESRGNAISE RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NFSMIPGTESRGNAISEPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFMDRDKFVINGSEEEV--VRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLA 300
           CH EF +RDKFVINGSEEEV         XXXXXXXXXXXXXXVR GEVGMNGDV++DLA
Sbjct: 241 CHTEFTERDKFVINGSEEEVXXXXXXXXXXXXXXXXXXXXXXXVRNGEVGMNGDVTMDLA 300

Query: 301 SSRLSGKKHGIEGKALGKVSAKSEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKE 360
           +SRLSGKKHGIE + L KVSAK E+HER D G QVKVAASNG VKRFKAADM PANATKE
Sbjct: 301 TSRLSGKKHGIELQTLEKVSAKPERHERLDGGAQVKVAASNGAVKRFKAADMVPANATKE 360

Query: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 387
           VYASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 386

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BLAST of Carg14097 vs. TAIR10
Match: AT5G58020.1 (unknown protein)

HSP 1 Score: 378.6 bits (971), Expect = 4.5e-105
Identity = 217/382 (56.81%), Postives = 251/382 (65.71%), Query Frame = 0


Query: 8   RLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLA-SSFYFTLNGKPLLD 67
           R Q FV SPD Q   K+V L    AQSL  L     L   + R++ S+   TL+GK L  
Sbjct: 4   RRQIFVKSPDCQ---KVVALQLDPAQSLLTLSGITSLLESSQRISFSACSITLDGKLLNG 63

Query: 68  SATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPNEQRLSK 127
           S  I  S +P +S L L  R+ GGGGDGGATGAESRDCYL MYAEKKPDKVDPNEQRLSK
Sbjct: 64  STRIQVSKLPSVSMLTLFPRLRGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRLSK 123

Query: 128 WLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKINLSMIP 187
           WLNCALSNEPL EPCVID LGN+FNKE LVHALL K+LPK F ++KGLKDM+ I L+ + 
Sbjct: 124 WLNCALSNEPLAEPCVIDLLGNLFNKEVLVHALLSKRLPKQFSYIKGLKDMVNIKLTPVA 183

Query: 188 GTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAEFM 247
           G++      + A+FQCP++GLEFNGKYKFFALR CGHV+SAKALKEVKSSSCLVCHA+  
Sbjct: 184 GSDGSSQDTTSAQFQCPVSGLEFNGKYKFFALRGCGHVMSAKALKEVKSSSCLVCHADVK 243

Query: 248 DRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLASSRLSGKK 307
           D DK VING+EEEV  +RERM                        +    L   +   KK
Sbjct: 244 DSDKIVINGTEEEVDLLRERME-----------------------EEKAKLREKKGVSKK 303

Query: 308 HGIEGKALGKVSAKSEKHERPDSGVQVKVAASNG-GVKRFKAADMAPANATKEVYASIFT 367
                  +    AK  K +  D  V       NG  VK+FKAAD  P NATKEVYAS+FT
Sbjct: 304 SKNGAAVVADTGAKVAKRQIEDGNVN-----GNGITVKKFKAADKVPVNATKEVYASLFT 354

Query: 368 SS-RKSDFKETYSCRSLPLGRN 387
           SS +KSDF+ETYSCRSLPLGRN
Sbjct: 364 SSKKKSDFRETYSCRSLPLGRN 354

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BLAST of Carg14097 vs. Swiss-Prot
Match: sp|Q99K95|RTF2_MOUSE (Protein RTF2 homolog OS=Mus musculus OX=10090 GN=Rtfdc1 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-28
Identity = 65/168 (38.69%), Postives = 101/168 (60.12%), Query Frame = 0


Query: 112 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFG-- 171
           KK +KVD + + +++W  C LS E LR P V   LG ++NK+ ++  LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 172 --HVKGLKDMIKINLSMIPGTE-SRGNA-------ISEARFQCPITGLEFNGKYKFFALR 231
             H++ +K++ ++ LS  P  E  +GN        +  ARF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 232 TCGHVLSAKALKEVKSSSCLVCHAEFMDRDKFVINGSEEEVVRMRERM 268
            CG V S +ALKE+K+  C  C A F + D  V+NG++E+V  +++RM
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRM 186

[Close]

BLAST of Carg14097 vs. Swiss-Prot
Match: sp|Q3T1J8|RTF2_RAT (Protein RTF2 homolog OS=Rattus norvegicus OX=10116 GN=Rtfdc1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-28
Identity = 87/270 (32.22%), Postives = 132/270 (48.89%), Query Frame = 0


Query: 112 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFG-- 171
           KK +KVD + + +++W  C LS E LR P V   LG ++NK+ ++  LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEVLRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 172 --HVKGLKDMIKINLSMIPGTE-SRGNA-------ISEARFQCPITGLEFNGKYKFFALR 231
             H++ +K++ ++ LS  P  E  +GN        +  ARF CP+ GLE NG+++F  LR
Sbjct: 79  TSHIRSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 232 TCGHVLSAKALKEVKSSSCLVCHAEFMDRDKFVINGSEEEVVRMRERM-XXXXXXXXXXX 291
            CG V S +ALKE+K+  C  C A F + D  V+NG++E+V  ++ RM            
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKRRMEERRLRAKLEKK 198

Query: 292 XXXVRTGEVGMNGDVSVDLA--SSRLSGKKHGIEGKALGKVSAKSEKHERPDSGVQVKVA 351
               +T E      +S D A  S   +GK    +     K S+ + +    +     KV 
Sbjct: 199 TKKPKTAESASKLGISQDSAGPSKAKAGKSEEADPDPREKKSSLAPRGTASNGSASGKVG 258

Query: 352 ASNGGVKRFKAADMAPANATKEVYASIFTS 367
               G  +   AD    +   E Y SIFTS
Sbjct: 259 KPPCGALKRSIAD----SEESETYKSIFTS 284

[Close]

BLAST of Carg14097 vs. Swiss-Prot
Match: sp|Q0VCR1|RTF2_BOVIN (Protein RTF2 homolog OS=Bos taurus OX=9913 GN=RTFDC1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-28
Identity = 90/279 (32.26%), Postives = 143/279 (51.25%), Query Frame = 0


Query: 112 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFG-- 171
           KK +KVD + + +++W  C LS E LR P V   LG ++NK+ ++  LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKA 78

Query: 172 --HVKGLKDMIKINLSMIPGTE-SRGNA-------ISEARFQCPITGLEFNGKYKFFALR 231
             H+K +K++ ++ LS  P  E  +GN        +  ARF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIKSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 232 TCGHVLSAKALKEVKSSSCLVCHAEFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXX 291
            CG V S +ALKE+K+  C  C A F + D  V+NG++E+V  ++ R+            
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVEVLKSRI--------EERR 198

Query: 292 XXVRTGEVGMNGDVSVDLASSRLSGKKHGIEGKALGKVSAKSEKHERPDSGVQVKVAASN 351
              + G+      V+  ++ S +S +  G      GK    S       +    K AA++
Sbjct: 199 LRAKLGKKTKKPKVAESVSKSEVSEETPGPSKVKTGKPEETSLDTREKKTNSAPKSAAAH 258

Query: 352 GGVKRFKAADMAPANATK-EVYASIFT--SSRKSDFKET 376
            G+   KAA  + A++ + E Y S+FT  SS K   +E+
Sbjct: 259 -GITSGKAAKRSIADSEESEAYKSLFTTHSSAKRSKEES 288

[Close]

BLAST of Carg14097 vs. Swiss-Prot
Match: sp|Q5R9P9|RTF2_PONAB (Protein RTF2 homolog OS=Pongo abelii OX=9601 GN=RTFDC1 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-28
Identity = 66/168 (39.29%), Postives = 100/168 (59.52%), Query Frame = 0


Query: 112 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFG-- 171
           KK +KVD + + +++W  C LS E LR P V   LG ++NK+ ++  LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 172 --HVKGLKDMIKINLSMIPGTE-SRGNA-------ISEARFQCPITGLEFNGKYKFFALR 231
             H+K +K++ ++ LS  P  E  +GN        +  ARF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 232 TCGHVLSAKALKEVKSSSCLVCHAEFMDRDKFVINGSEEEVVRMRERM 268
            CG V S +ALKE+K+  C  C A F + D  V+NG++E+V  ++ RM
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRM 186

[Close]

BLAST of Carg14097 vs. Swiss-Prot
Match: sp|Q4R594|RTF2_MACFA (Protein RTF2 homolog OS=Macaca fascicularis OX=9541 GN=RTFDC1 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.2e-28
Identity = 66/168 (39.29%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 112 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFG-- 171
           KK +KVD + + +++W  C LS E LR P V   LG ++NK+ ++  LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 172 --HVKGLKDMIKINLSMIPGTE-SRGNA-------ISEARFQCPITGLEFNGKYKFFALR 231
             H+K +K++ ++ LS  P  E  +GN        +  ARF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 232 TCGHVLSAKALKEVKSSSCLVCHAEFMDRDKFVINGSEEEVVRMRERM 268
            CG V S +ALKE+K+  C  C A F + D  V+NG+ E+V  ++ RM
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTNEDVDVLKARM 186

[Close]

BLAST of Carg14097 vs. TrEMBL
Match: tr|A0A1S3B9F3|A0A1S3B9F3_CUCME (protein RTF2 homolog OS=Cucumis melo OX=3656 GN=LOC103487489 PE=4 SV=1)

HSP 1 Score: 619.8 bits (1597), Expect = 4.2e-174
Identity = 334/388 (86.08%), Postives = 350/388 (90.21%), Query Frame = 0


Query: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60
           M+PKNQHRLQ F+HSPDLQIQSKIV+L QTSA++L DLK SL+  T ASR+ASS YFTLN
Sbjct: 1   MHPKNQHRLQIFLHSPDLQIQSKIVDLPQTSAKTLEDLKFSLLSETLASRVASSLYFTLN 60

Query: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120
           GKPLLDS TI  SL+PPLSTLILRTRVLGGGGDGGATGAESRDCYL MYAEKKPDKVDPN
Sbjct: 61  GKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKI 180
           EQRLSKWLNCALSNEPL EPCVIDWLGN+FNKE LV ALLEKKLPKGFGH+KGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           N SMIPGTESRGNAISE RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NFSMIPGTESRGNAISEPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFMDRDKFVINGSEEEV--VRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLA 300
           CH EF +RDKFVINGSEEEV         XXXXXXXXXXXXXXVR GEVGMNGDV++DLA
Sbjct: 241 CHTEFTERDKFVINGSEEEVXXXXXXXXXXXXXXXXXXXXXXXVRNGEVGMNGDVTMDLA 300

Query: 301 SSRLSGKKHGIEGKALGKVSAKSEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKE 360
           +SRLSGKKHGIE + L KVSAK E+HER D G QVKVAASNG VKRFKAADM PANATKE
Sbjct: 301 TSRLSGKKHGIELQTLEKVSAKPERHERLDGGAQVKVAASNGAVKRFKAADMVPANATKE 360

Query: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 387
           VYASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Carg14097 vs. TrEMBL
Match: tr|A0A0A0LTI5|A0A0A0LTI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269330 PE=4 SV=1)

HSP 1 Score: 610.9 bits (1574), Expect = 2.0e-171
Identity = 330/388 (85.05%), Postives = 345/388 (88.92%), Query Frame = 0


Query: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60
           M+PKNQHR Q F+ SPDLQI+SKIVNL QT A++L DLK SL+    ASR+ASSFYFTLN
Sbjct: 1   MHPKNQHRFQIFLQSPDLQIESKIVNLPQTPAKTLEDLKFSLLTEILASRIASSFYFTLN 60

Query: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120
           GKPLLDS TI  SL+PPLSTLILRTRVLGGGGDGGATGAESRDCYL MYAEKKPDKVDPN
Sbjct: 61  GKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGN+FNKE LV ALLEKKLPKGFGH+KGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVQALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           N SMIPGTESRGNAISE R+QCP+TGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NFSMIPGTESRGNAISEPRYQCPVTGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFMDRDKFVINGSEEEV--VRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLA 300
           CHAEF +RDKFVINGSEEEV         XXXXXXXXXXXXXXVR GEVGMNGDVSVDLA
Sbjct: 241 CHAEFAERDKFVINGSEEEVXXXXXXXXXXXXXXXXXXXXXXXVRNGEVGMNGDVSVDLA 300

Query: 301 SSRLSGKKHGIEGKALGKVSAKSEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKE 360
            SRLSGKKH IE K+L KVSAK E+ ER D G QVK A SNG VKRFKAADM PANATKE
Sbjct: 301 ISRLSGKKHAIEVKSLEKVSAKPERQERLDGGAQVKDATSNGAVKRFKAADMVPANATKE 360

Query: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 387
           VYASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Carg14097 vs. TrEMBL
Match: tr|A0A2P5E1N4|A0A2P5E1N4_PARAD (Zinc finger, RING/FYVE/PHD-type domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_011850 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 6.1e-133
Identity = 254/391 (64.96%), Postives = 292/391 (74.68%), Query Frame = 0


Query: 4   KNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLNGKP 63
           +   R+Q  V  PD+Q+ SK + L  + +Q+L  LK SL     +S   SSFYFTLNGKP
Sbjct: 5   RESRRIQVIVQFPDMQVPSKTLILTPSESQTLHHLKRSLFAEPFSSEAVSSFYFTLNGKP 64

Query: 64  LLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPNEQR 123
           L DS+ I SS + PLST+ILR+R  GGGGDGGATGAESRDCYL MYAEKKPDKVDPNEQR
Sbjct: 65  LDDSSPILSSRIAPLSTIILRSRTRGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQR 124

Query: 124 LSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKINLS 183
           LSKWLNCALSNEPL+EPCV+DWLGN+FNKE LV ALL KK+PK FGH+KGLKDMIKI LS
Sbjct: 125 LSKWLNCALSNEPLKEPCVVDWLGNVFNKEALVEALLGKKIPKAFGHIKGLKDMIKIELS 184

Query: 184 MIPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHA 243
            IPGTE  G+  SEARFQCPITGLEFNGKYKFFAL+ CGHVLSAKALKEVKSSSCLVCHA
Sbjct: 185 SIPGTEGNGDLRSEARFQCPITGLEFNGKYKFFALKNCGHVLSAKALKEVKSSSCLVCHA 244

Query: 244 EFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLA----S 303
           EF + DK VING++EEV+ +RERM              +++G+VG   D  V +     S
Sbjct: 245 EFTETDKIVINGNDEEVLVLRERMEAEKGKLREKKAKKLKSGDVGAAADGEVGVGSGSDS 304

Query: 304 SRLSGKKHGI-EGKALGKVSAKSEKHE---RPDSGVQVKVAASNGGVKRFKAADMAPANA 363
           +RLSG KHGI + KA  KVS+     +     +  V  K  ++N   KRFKA D+AP NA
Sbjct: 305 ARLSGTKHGISDVKAELKVSSNGNGKDVKAASNGAVSGKSLSNNAAAKRFKATDIAPPNA 364

Query: 364 TKEVYASIFTSSRKSDFKETYSCRSLPLGRN 387
            KEVYASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 365 NKEVYASIFTSSRKSDFKETYSCRSLPLGRN 395

[Close]

BLAST of Carg14097 vs. TrEMBL
Match: tr|A0A2P5F3C9|A0A2P5F3C9_9ROSA (Zinc finger, RING/FYVE/PHD-type domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_119320 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 1.8e-132
Identity = 259/391 (66.24%), Postives = 290/391 (74.17%), Query Frame = 0


Query: 4   KNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLNGKP 63
           +   RLQ  V  PDLQI SK + L  + +Q+L  LK SL     +S   SSFYFTLNGKP
Sbjct: 5   RESRRLQVIVQFPDLQIPSKTLILTPSESQTLHHLKRSLFAEPFSSEALSSFYFTLNGKP 64

Query: 64  LLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPNEQR 123
           L DS+ I SS + PLSTLILR+R  GGGGDGGATGAESRDCYL MYAEKKPDKVDPNEQR
Sbjct: 65  LDDSSPILSSRIAPLSTLILRSRARGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQR 124

Query: 124 LSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKINLS 183
           LSKWLNCALSNEPL+EPCV+DWLGN+FNKE LV ALL KK+PK FGH+KGLKDMIKI LS
Sbjct: 125 LSKWLNCALSNEPLKEPCVVDWLGNVFNKEALVEALLGKKIPKAFGHIKGLKDMIKIELS 184

Query: 184 MIPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHA 243
            IPGTE  G+  S ARFQCPITGLEFNGKYKFFAL+ CGHVLSAKALKEVKSSSCLVCHA
Sbjct: 185 SIPGTEGDGDLRSGARFQCPITGLEFNGKYKFFALKNCGHVLSAKALKEVKSSSCLVCHA 244

Query: 244 EFMDRDKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEV--GMNGDVSVDLA--S 303
           EF + DK VING++EEV+ +RERM              V+ G+V    NG+V V     S
Sbjct: 245 EFTETDKIVINGNDEEVLVLRERMEAEKGKLREKRAKKVKNGDVAAAANGEVGVGSGSDS 304

Query: 304 SRLSGKKHGI-EGKALGKVSAKSE---KHERPDSGVQVKVAASNGGVKRFKAADMAPANA 363
           +RLSG KHGI + KA  KVS+           +  V  K  ++N   KRFKA D+AP NA
Sbjct: 305 ARLSGTKHGISDVKAELKVSSNGNGKAVKAASNGAVSAKSLSNNAAAKRFKATDIAPPNA 364

Query: 364 TKEVYASIFTSSRKSDFKETYSCRSLPLGRN 387
            KEVYASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 365 NKEVYASIFTSSRKSDFKETYSCRSLPLGRN 395

[Close]

BLAST of Carg14097 vs. TrEMBL
Match: tr|A0A2P4JZ66|A0A2P4JZ66_QUESU (Protein rtf2 like OS=Quercus suber OX=58331 GN=CFP56_02414 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 2.6e-131
Identity = 260/378 (68.78%), Postives = 288/378 (76.19%), Query Frame = 0


Query: 9   LQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLNGKPLLDSA 68
           LQ FV S D QI +K + L  T  Q+L  LKLSL+    +++  SSFYFTLNGK L DS 
Sbjct: 3   LQIFVQSLDPQIPTKTLTLTPTPNQTLHHLKLSLL----STQSLSSFYFTLNGKTLPDST 62

Query: 69  TISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPNEQRLSKWL 128
            +    + PLSTLIL  R+ GGGGDGGATGAESRDCYL MY EKKPDKVDPNEQRLSKW 
Sbjct: 63  PLQVPQIAPLSTLILHPRLPGGGGDGGATGAESRDCYLHMYDEKKPDKVDPNEQRLSKWS 122

Query: 129 NCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHVKGLKDMIKINLSMIPGT 188
           NCALSNEPLREPCVID LGN+FNKE LV ALL KKLPK FGHVKGLKDMI + LSMIPG 
Sbjct: 123 NCALSNEPLREPCVIDKLGNVFNKEALVEALLGKKLPKAFGHVKGLKDMITVKLSMIPGA 182

Query: 189 ESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAEFMDR 248
           E   N     RF+CPITGL FNGKYKFFALR CGHVLSAKALKEVKSSSCLVCH EF + 
Sbjct: 183 ELDENVHDGTRFECPITGLAFNGKYKFFALRNCGHVLSAKALKEVKSSSCLVCHEEFKES 242

Query: 249 DKFVINGSEEEVVRMRERMXXXXXXXXXXXXXXVRTGEVGMNGDVSVDLASSRLSGKKHG 308
           DK VINGSEEEV  +RERM       XXXXXX V+ GE+G+NG+  + L + RLSGKKHG
Sbjct: 243 DKLVINGSEEEVAVLRERMEEEKTKMXXXXXXKVKNGEMGVNGEEGIGLEAPRLSGKKHG 302

Query: 309 IEGKALGKVSAKSEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKEVYASIFTSSR 368
           I+ KA+ KVS K E + +  +G        NG VKRFKA D+APANATKEVYASIFTSSR
Sbjct: 303 IDVKAVEKVSGKVEGNGKVVNGEVGVKGVGNGAVKRFKAVDLAPANATKEVYASIFTSSR 362

Query: 369 KSDFKETYSCRSLPLGRN 387
           KS+FKETYSCRSLPLGRN
Sbjct: 363 KSNFKETYSCRSLPLGRN 376

The following BLAST results are available for this feature:

BLAST of Carg14097 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933589.1	5.3e-205	98.96	protein RTF2 homolog [Cucurbita moschata]	[more]
XP_023005959.1	3.6e-201	96.63	protein RTF2 homolog isoform X1 [Cucurbita maxima] >XP_023005964.1 protein RTF2 ...	[more]
XP_023531451.1	6.1e-201	97.41	protein RTF2 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022135450.1	8.0e-177	84.72	protein RTF2 homolog [Momordica charantia]	[more]
XP_008444038.1	6.4e-174	86.08	PREDICTED: protein RTF2 homolog [Cucumis melo]	[more]

BLAST of Carg14097 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58020.1	4.5e-105	56.81	unknown protein	[more]

BLAST of Carg14097 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q99K95\|RTF2_MOUSE	1.1e-28	38.69	Protein RTF2 homolog OS=Mus musculus OX=10090 GN=Rtfdc1 PE=1 SV=1	[more]
sp\|Q3T1J8\|RTF2_RAT	1.1e-28	32.22	Protein RTF2 homolog OS=Rattus norvegicus OX=10116 GN=Rtfdc1 PE=2 SV=1	[more]
sp\|Q0VCR1\|RTF2_BOVIN	1.9e-28	32.26	Protein RTF2 homolog OS=Bos taurus OX=9913 GN=RTFDC1 PE=2 SV=1	[more]
sp\|Q5R9P9\|RTF2_PONAB	2.5e-28	39.29	Protein RTF2 homolog OS=Pongo abelii OX=9601 GN=RTFDC1 PE=2 SV=1	[more]
sp\|Q4R594\|RTF2_MACFA	3.2e-28	39.29	Protein RTF2 homolog OS=Macaca fascicularis OX=9541 GN=RTFDC1 PE=2 SV=1	[more]

BLAST of Carg14097 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B9F3\|A0A1S3B9F3_CUCME	4.2e-174	86.08	protein RTF2 homolog OS=Cucumis melo OX=3656 GN=LOC103487489 PE=4 SV=1	[more]
tr\|A0A0A0LTI5\|A0A0A0LTI5_CUCSA	2.0e-171	85.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269330 PE=4 SV=1	[more]
tr\|A0A2P5E1N4\|A0A2P5E1N4_PARAD	6.1e-133	64.96	Zinc finger, RING/FYVE/PHD-type domain containing protein OS=Parasponia anderson...	[more]
tr\|A0A2P5F3C9\|A0A2P5F3C9_9ROSA	1.8e-132	66.24	Zinc finger, RING/FYVE/PHD-type domain containing protein OS=Trema orientalis OX...	[more]
tr\|A0A2P4JZ66\|A0A2P4JZ66_QUESU	2.6e-131	68.78	Protein rtf2 like OS=Quercus suber OX=58331 GN=CFP56_02414 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:1902979	mitotic DNA replication termination

Vocabulary: **INTERPRO**
Term	Definition
IPR006735	Rtf2
IPR027799	Rtf2_RING-finger

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902979	mitotic DNA replication termination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14097-RA	Carg14097-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 253..273
None	No IPR available	CDD	cd16653	RING-like_Rtf2	coord: 200..245 e-value: 2.41097E-26 score: 98.8523
IPR027799	Replication termination factor 2, RING-finger	PFAM	PF04641	Rtf2	coord: 90..370 e-value: 5.3E-74 score: 248.8
IPR006735	Replication termination factor 2	PANTHER	PTHR12775	PROTEIN C20ORF43 HOMOLOG	coord: 89..385

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14097	Cla018721	Watermelon (97103) v1	carwmB0507
Carg14097	Csa1G269330	Cucumber (Chinese Long) v2	carcuB0531
Carg14097	MELO3C010238	Melon (DHL92) v3.5.1	carmeB0509
Carg14097	ClCG06G012260	Watermelon (Charleston Gray)	carwcgB0496
Carg14097	CSPI01G17510	Wild cucumber (PI 183967)	carcpiB0539
Carg14097	Cucsa.350920	Cucumber (Gy14) v1	carcgyB0585
Carg14097	CmaCh11G004740	Cucurbita maxima (Rimu)	carcmaB0710
Carg14097	CmoCh11G004710	Cucurbita moschata (Rifu)	carcmoB0689
Carg14097	CmoCh10G005120	Cucurbita moschata (Rifu)	carcmoB0688
Carg14097	Cp4.1LG18g05470	Cucurbita pepo (Zucchini)	carcpeB0715
Carg14097	Cp4.1LG04g08840	Cucurbita pepo (Zucchini)	carcpeB0717
Carg14097	CsGy1G017700	Cucumber (Gy14) v2	carcgybB0508
Carg14097	MELO3C010238.2	Melon (DHL92) v3.6.1	carmedB0515
Carg14097	CsaV3_1G028770	Cucumber (Chinese Long) v3	carcucB0537
Carg14097	Cla97C06G121440	Watermelon (97103) v2	carwmbB0534
Carg14097	Bhi02G000707	Wax gourd	carwgoB0620

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg14097	Carg09983	Silver-seed gourd	carcarB151

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14097	Silver-seed gourd	carcarB492
Carg14097	Cucumber (Gy14) v2	carcgybB0512
Carg14097	Cucumber (Gy14) v1	carcgyB0584
Carg14097	Cucurbita maxima (Rimu)	carcmaB0708
Carg14097	Cucurbita maxima (Rimu)	carcmaB0709
Carg14097	Cucurbita maxima (Rimu)	carcmaB0715
Carg14097	Cucurbita moschata (Rifu)	carcmoB0687
Carg14097	Cucurbita pepo (Zucchini)	carcpeB0716
Carg14097	Cucurbita pepo (Zucchini)	carcpeB0719
Carg14097	Wild cucumber (PI 183967)	carcpiB0541
Carg14097	Cucumber (Chinese Long) v2	carcuB0534
Carg14097	Cucumber (Chinese Long) v3	carcucB0540
Carg14097	Bottle gourd (USVL1VR-Ls)	carlsiB461
Carg14097	Melon (DHL92) v3.5.1	carmeB0514
Carg14097	Melon (DHL92) v3.6.1	carmedB0520
Carg14097	Watermelon (Charleston Gray)	carwcgB0494
Carg14097	Watermelon (97103) v1	carwmB0502
Carg14097	Watermelon (97103) v2	carwmbB0532
Carg14097	Wax gourd	carwgoB0619