Cla97C06G121440 (gene) Watermelon (97103) v2

Overview
NameCla97C06G121440
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionprotein RTF2 homolog
LocationCla97Chr06 : 23827122 .. 23827481 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGCATCATCTTTCTACTTCACCTCACCCTCAATGGGAAACCCTTCCTCGATTCCACCACGATTCCCAATTCCCTAATTCCTCCTCTATCCACCTTAATCTTAAGAACCAGGTTTCTTGGCAGTGGGGGCGATGGTGGTGCAACAGGGGCTGCATCTCGCGACTGCTACCTCAATATGTTTACAGTCAACAACCGCTGTTACTCTGTCAAACTGTTTTACATTTTTAGATCAGTTAATATTGATGAAAATCTTGGGTTGATAAATCCATTAGTCTCTAGTAGTACAACATTTGAGTTCATGTTTGAGATTTTGAAAAGGGAACCCCTGATGGAGTGCCTAATTTGCATATTTTGA

mRNA sequence

ATGGGTTGCATCATCTTTCTACTTCACCTCACCCTCAATGGGAAACCCTTCCTCGATTCCACCACGATTCCCAATTCCCTAATTCCTCCTCTATCCACCTTAATCTTAAGAACCAGGTTTCTTGGCAGTGGGGGCGATGGTGGTGCAACAGGGGCTGCATCTCGCGACTGCTACCTCAATATGTTTACAGTCAACAACCGCTGTTACTCTGTCAAACTGTTTTACATTTTTAGATCAGTTAATATTGATGAAAATCTTGGGTTGATAAATCCATTAGTCTCTAGTAGTACAACATTTGAGTTCATGTTTGAGATTTTGAAAAGGGAACCCCTGATGGAGTGCCTAATTTGCATATTTTGA

Coding sequence (CDS)

ATGGGTTGCATCATCTTTCTACTTCACCTCACCCTCAATGGGAAACCCTTCCTCGATTCCACCACGATTCCCAATTCCCTAATTCCTCCTCTATCCACCTTAATCTTAAGAACCAGGTTTCTTGGCAGTGGGGGCGATGGTGGTGCAACAGGGGCTGCATCTCGCGACTGCTACCTCAATATGTTTACAGTCAACAACCGCTGTTACTCTGTCAAACTGTTTTACATTTTTAGATCAGTTAATATTGATGAAAATCTTGGGTTGATAAATCCATTAGTCTCTAGTAGTACAACATTTGAGTTCATGTTTGAGATTTTGAAAAGGGAACCCCTGATGGAGTGCCTAATTTGCATATTTTGA

Protein sequence

MGCIIFLLHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMFTVNNRCYSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMFEILKREPLMECLICIF
Homology
[Close]
BLAST of Cla97C06G121440 vs. NCBI nr
Match: XP_023516862.1 (protein RTF2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 4   IIFLLHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           I+   + TLNGKP LDSTTIP+SLIPPLSTLILRTR LG GGDGGATGA SRDCYLNM+
Sbjct: 47  IVSSFYFTLNGKPLLDSTTIPSSLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMY 105

[Close]
BLAST of Cla97C06G121440 vs. NCBI nr
Match: XP_022922055.1 (protein RTF2 homolog [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 3.4e-17
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 4   IIFLLHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           I+   + TLNGKP LDSTTIP SLIPPLSTLILRTR LG GGDGGATGA SRDCYLNM+
Sbjct: 47  IVSSFYFTLNGKPLLDSTTIPCSLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMY 105

[Close]
BLAST of Cla97C06G121440 vs. NCBI nr
Match: XP_008444038.1 (PREDICTED: protein RTF2 homolog [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 0 

Query: 8   LHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMFTVNNR 67
           L+ TLNGKP LDSTTI  SLIPPLSTLILRTR LG GGDGGATGA SRDCYLNM+     
Sbjct: 55  LYFTLNGKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKK- 114

Query: 68  CYSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMFEILKREPLMECLI 117
               K+    + ++   N  L N  +S     +++  +  +E L++ L+
Sbjct: 115 --PDKVDPNEQRLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALL 158

[Close]
BLAST of Cla97C06G121440 vs. NCBI nr
Match: XP_022933589.1 (protein RTF2 homolog [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 0 

Query: 9   HLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMFTVNNRC 68
           + TLNGKP LDS TI +SL+PPLSTLILRTR LG GGDGGATGA SRDCYL M+      
Sbjct: 56  YFTLNGKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKK-- 115

Query: 69  YSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMFEILKREPLMECLI 117
              K+    + ++   N  L N  +      +++  I  +EPL+  L+
Sbjct: 116 -PDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALL 160

[Close]
BLAST of Cla97C06G121440 vs. NCBI nr
Match: XP_023005959.1 (protein RTF2 homolog isoform X1 [Cucurbita maxima] >XP_023005964.1 protein RTF2 homolog isoform X2 [Cucurbita maxima] >XP_023005967.1 protein RTF2 homolog isoform X3 [Cucurbita maxima])

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 9   HLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           + TLNGKP LDS TI +SL+PPLSTLILRTR LG GGDGGATGA SRDCYL M+
Sbjct: 56  YFTLNGKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMY 109

[Close]
BLAST of Cla97C06G121440 vs. TrEMBL
Match: tr|A0A1S3B9F3|A0A1S3B9F3_CUCME (protein RTF2 homolog OS=Cucumis melo OX=3656 GN=LOC103487489 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 0 

Query: 8   LHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMFTVNNR 67
           L+ TLNGKP LDSTTI  SLIPPLSTLILRTR LG GGDGGATGA SRDCYLNM+     
Sbjct: 55  LYFTLNGKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKK- 114

Query: 68  CYSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMFEILKREPLMECLI 117
               K+    + ++   N  L N  +S     +++  +  +E L++ L+
Sbjct: 115 --PDKVDPNEQRLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALL 158

[Close]
BLAST of Cla97C06G121440 vs. TrEMBL
Match: tr|A0A0A0LTI5|A0A0A0LTI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269330 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.6e-15
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 9   HLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           + TLNGKP LDSTTI  SLIPPLSTLILRTR LG GGDGGATGA SRDCYLNM+
Sbjct: 56  YFTLNGKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMY 107

[Close]
BLAST of Cla97C06G121440 vs. TrEMBL
Match: tr|A0A068UPL2|A0A068UPL2_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030865001 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.0e-14
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 8   LHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           L+ TLNGKP  DST +PNS I PLSTL LR R LG GGDGGATGA SRDCYLNM+
Sbjct: 53  LYFTLNGKPLSDSTKLPNSQIAPLSTLTLRCRLLGGGGDGGATGAESRDCYLNMY 107

[Close]
BLAST of Cla97C06G121440 vs. TrEMBL
Match: tr|A0A1J7J2T8|A0A1J7J2T8_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06957 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.7e-14
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 0 

Query: 4   IIFLLHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMFT 63
           I+  L+ TLNGKP LD T + +S I P STLILR+R LG GGDGGATGA SRDCYLNM+ 
Sbjct: 46  IVSSLYFTLNGKPLLDETPLSSSQIAPFSTLILRSRLLGGGGDGGATGAESRDCYLNMYA 105

Query: 64  VNNRCYSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMFEILKREPLMECLI 117
                   K+    + ++   N  L N  +S     + +  I  +E L+E LI
Sbjct: 106 EKK---PDKVDPNEQRLSKWLNCALSNETLSEPCVIDKLGNIFNKESLVEALI 155

[Close]
BLAST of Cla97C06G121440 vs. TrEMBL
Match: tr|A0A1Q3DEF4|A0A1Q3DEF4_CEPFO (Rtf2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34259 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 9   HLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           + TLNGKP  DST +PN  I PLSTLILR R LG GGDGGATGA SRDCYLNM+
Sbjct: 50  YFTLNGKPLDDSTPLPNPQITPLSTLILRPRLLGGGGDGGATGAESRDCYLNMY 103

[Close]
BLAST of Cla97C06G121440 vs. TAIR10
Match: AT5G58020.1 (unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-10
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 10  LTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           +TL+GK    ST I  S +P +S L L  R  G GGDGGATGA SRDCYLNM+
Sbjct: 51  ITLDGKLLNGSTRIQVSKLPSVSMLTLFPRLRGGGGDGGATGAESRDCYLNMY 103

The following BLAST results are available for this feature:
BLAST of Cla97C06G121440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023516862.11.2e-1779.66protein RTF2 homolog [Cucurbita pepo subsp. pepo][more]
XP_022922055.13.4e-1779.66protein RTF2 homolog [Cucurbita moschata][more]
XP_008444038.11.9e-1549.54PREDICTED: protein RTF2 homolog [Cucumis melo][more]
XP_022933589.11.9e-1547.22protein RTF2 homolog [Cucurbita moschata][more]
XP_023005959.13.2e-1577.78protein RTF2 homolog isoform X1 [Cucurbita maxima] >XP_023005964.1 protein RTF2 ... [more]
BLAST of Cla97C06G121440 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B9F3|A0A1S3B9F3_CUCME1.2e-1549.54protein RTF2 homolog OS=Cucumis melo OX=3656 GN=LOC103487489 PE=4 SV=1[more]
tr|A0A0A0LTI5|A0A0A0LTI5_CUCSA3.6e-1583.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269330 PE=4 SV=1[more]
tr|A0A068UPL2|A0A068UPL2_COFCA3.0e-1474.55Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030865001 PE=4 ... [more]
tr|A0A1J7J2T8|A0A1J7J2T8_LUPAN6.7e-1445.13Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06957 PE=4 S... [more]
tr|A0A1Q3DEF4|A0A1Q3DEF4_CEPFO1.2e-1374.07Rtf2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_342... [more]
BLAST of Cla97C06G121440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C06G121440 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58020.14.9e-1058.49unknown protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902979 mitotic DNA replication termination
biological_process GO:0008150 biological_process
biological_process GO:0071171 site-specific DNA replication termination at RTS1 barrier
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G121440.1Cla97C06G121440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C06G121440Cla018721Watermelon (97103) v1wmwmbB406
Cla97C06G121440ClCG06G012260Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G121440CmaCh11G004740Cucurbita maxima (Rimu)cmawmbB139
Cla97C06G121440CmoCh10G005120Cucurbita moschata (Rifu)cmowmbB070
Cla97C06G121440CmoCh11G004710Cucurbita moschata (Rifu)cmowmbB123
Cla97C06G121440Carg09983Silver-seed gourdcarwmbB0133
Cla97C06G121440Carg14097Silver-seed gourdcarwmbB0534
Cla97C06G121440Bhi02G000707Wax gourdwgowmbB655
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G121440Watermelon (97103) v2wmbwmbB139
Cla97C06G121440Silver-seed gourdcarwmbB0663
Cla97C06G121440Cucumber (Gy14) v2cgybwmbB063
Cla97C06G121440Cucumber (Gy14) v2cgybwmbB297
Cla97C06G121440Cucumber (Gy14) v1cgywmbB473
Cla97C06G121440Cucumber (Gy14) v1cgywmbB597
Cla97C06G121440Cucurbita maxima (Rimu)cmawmbB034
Cla97C06G121440Cucurbita maxima (Rimu)cmawmbB081
Cla97C06G121440Cucurbita maxima (Rimu)cmawmbB488
Cla97C06G121440Cucurbita moschata (Rifu)cmowmbB022
Cla97C06G121440Cucurbita moschata (Rifu)cmowmbB471
Cla97C06G121440Wild cucumber (PI 183967)cpiwmbB068
Cla97C06G121440Wild cucumber (PI 183967)cpiwmbB325
Cla97C06G121440Cucumber (Chinese Long) v3cucwmbB063
Cla97C06G121440Cucumber (Chinese Long) v3cucwmbB323
Cla97C06G121440Cucumber (Chinese Long) v2cuwmbB066
Cla97C06G121440Cucumber (Chinese Long) v2cuwmbB315
Cla97C06G121440Bottle gourd (USVL1VR-Ls)lsiwmbB380
Cla97C06G121440Melon (DHL92) v3.6.1medwmbB251
Cla97C06G121440Melon (DHL92) v3.6.1medwmbB480
Cla97C06G121440Melon (DHL92) v3.5.1mewmbB265
Cla97C06G121440Melon (DHL92) v3.5.1mewmbB487
Cla97C06G121440Watermelon (Charleston Gray)wcgwmbB240
Cla97C06G121440Watermelon (97103) v1wmwmbB220
Cla97C06G121440Wax gourdwgowmbB588