Cla97C06G121440.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C06G121440.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionprotein RTF2 homolog
LocationCla97Chr06 : 23827122 .. 23827481 (-)
Sequence length360
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGCATCATCTTTCTACTTCACCTCACCCTCAATGGGAAACCCTTCCTCGATTCCACCACGATTCCCAATTCCCTAATTCCTCCTCTATCCACCTTAATCTTAAGAACCAGGTTTCTTGGCAGTGGGGGCGATGGTGGTGCAACAGGGGCTGCATCTCGCGACTGCTACCTCAATATGTTTACAGTCAACAACCGCTGTTACTCTGTCAAACTGTTTTACATTTTTAGATCAGTTAATATTGATGAAAATCTTGGGTTGATAAATCCATTAGTCTCTAGTAGTACAACATTTGAGTTCATGTTTGAGATTTTGAAAAGGGAACCCCTGATGGAGTGCCTAATTTGCATATTTTGA

mRNA sequence

ATGGGTTGCATCATCTTTCTACTTCACCTCACCCTCAATGGGAAACCCTTCCTCGATTCCACCACGATTCCCAATTCCCTAATTCCTCCTCTATCCACCTTAATCTTAAGAACCAGGTTTCTTGGCAGTGGGGGCGATGGTGGTGCAACAGGGGCTGCATCTCGCGACTGCTACCTCAATATGTTTACAGTCAACAACCGCTGTTACTCTGTCAAACTGTTTTACATTTTTAGATCAGTTAATATTGATGAAAATCTTGGGTTGATAAATCCATTAGTCTCTAGTAGTACAACATTTGAGTTCATGTTTGAGATTTTGAAAAGGGAACCCCTGATGGAGTGCCTAATTTGCATATTTTGA

Coding sequence (CDS)

ATGGGTTGCATCATCTTTCTACTTCACCTCACCCTCAATGGGAAACCCTTCCTCGATTCCACCACGATTCCCAATTCCCTAATTCCTCCTCTATCCACCTTAATCTTAAGAACCAGGTTTCTTGGCAGTGGGGGCGATGGTGGTGCAACAGGGGCTGCATCTCGCGACTGCTACCTCAATATGTTTACAGTCAACAACCGCTGTTACTCTGTCAAACTGTTTTACATTTTTAGATCAGTTAATATTGATGAAAATCTTGGGTTGATAAATCCATTAGTCTCTAGTAGTACAACATTTGAGTTCATGTTTGAGATTTTGAAAAGGGAACCCCTGATGGAGTGCCTAATTTGCATATTTTGA

Protein sequence

MGCIIFLLHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMFTVNNRCYSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMFEILKREPLMECLICIF
Homology
[Close]
BLAST of Cla97C06G121440.1 vs. NCBI nr
Match: XP_023516862.1 (protein RTF2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 4   IIFLLHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           I+   + TLNGKP LDSTTIP+SLIPPLSTLILRTR LG GGDGGATGA SRDCYLNM+
Sbjct: 47  IVSSFYFTLNGKPLLDSTTIPSSLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMY 105

[Close]
BLAST of Cla97C06G121440.1 vs. NCBI nr
Match: XP_022922055.1 (protein RTF2 homolog [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 3.4e-17
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 4   IIFLLHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           I+   + TLNGKP LDSTTIP SLIPPLSTLILRTR LG GGDGGATGA SRDCYLNM+
Sbjct: 47  IVSSFYFTLNGKPLLDSTTIPCSLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMY 105

[Close]
BLAST of Cla97C06G121440.1 vs. NCBI nr
Match: XP_008444038.1 (PREDICTED: protein RTF2 homolog [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 0 

Query: 8   LHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMFTVNNR 67
           L+ TLNGKP LDSTTI  SLIPPLSTLILRTR LG GGDGGATGA SRDCYLNM+     
Sbjct: 55  LYFTLNGKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKK- 114

Query: 68  CYSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMFEILKREPLMECLI 117
               K+    + ++   N  L N  +S     +++  +  +E L++ L+
Sbjct: 115 --PDKVDPNEQRLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALL 158

[Close]
BLAST of Cla97C06G121440.1 vs. NCBI nr
Match: XP_022933589.1 (protein RTF2 homolog [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 0 

Query: 9   HLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMFTVNNRC 68
           + TLNGKP LDS TI +SL+PPLSTLILRTR LG GGDGGATGA SRDCYL M+      
Sbjct: 56  YFTLNGKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKK-- 115

Query: 69  YSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMFEILKREPLMECLI 117
              K+    + ++   N  L N  +      +++  I  +EPL+  L+
Sbjct: 116 -PDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALL 160

[Close]
BLAST of Cla97C06G121440.1 vs. NCBI nr
Match: XP_023005959.1 (protein RTF2 homolog isoform X1 [Cucurbita maxima] >XP_023005964.1 protein RTF2 homolog isoform X2 [Cucurbita maxima] >XP_023005967.1 protein RTF2 homolog isoform X3 [Cucurbita maxima])

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 9   HLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           + TLNGKP LDS TI +SL+PPLSTLILRTR LG GGDGGATGA SRDCYL M+
Sbjct: 56  YFTLNGKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMY 109

[Close]
BLAST of Cla97C06G121440.1 vs. TrEMBL
Match: tr|A0A1S3B9F3|A0A1S3B9F3_CUCME (protein RTF2 homolog OS=Cucumis melo OX=3656 GN=LOC103487489 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 0 

Query: 8   LHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMFTVNNR 67
           L+ TLNGKP LDSTTI  SLIPPLSTLILRTR LG GGDGGATGA SRDCYLNM+     
Sbjct: 55  LYFTLNGKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKK- 114

Query: 68  CYSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMFEILKREPLMECLI 117
               K+    + ++   N  L N  +S     +++  +  +E L++ L+
Sbjct: 115 --PDKVDPNEQRLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALL 158

[Close]
BLAST of Cla97C06G121440.1 vs. TrEMBL
Match: tr|A0A0A0LTI5|A0A0A0LTI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269330 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.6e-15
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 9   HLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           + TLNGKP LDSTTI  SLIPPLSTLILRTR LG GGDGGATGA SRDCYLNM+
Sbjct: 56  YFTLNGKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMY 107

[Close]
BLAST of Cla97C06G121440.1 vs. TrEMBL
Match: tr|A0A068UPL2|A0A068UPL2_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030865001 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.0e-14
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 8   LHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           L+ TLNGKP  DST +PNS I PLSTL LR R LG GGDGGATGA SRDCYLNM+
Sbjct: 53  LYFTLNGKPLSDSTKLPNSQIAPLSTLTLRCRLLGGGGDGGATGAESRDCYLNMY 107

[Close]
BLAST of Cla97C06G121440.1 vs. TrEMBL
Match: tr|A0A1J7J2T8|A0A1J7J2T8_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06957 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.7e-14
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 0 

Query: 4   IIFLLHLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMFT 63
           I+  L+ TLNGKP LD T + +S I P STLILR+R LG GGDGGATGA SRDCYLNM+ 
Sbjct: 46  IVSSLYFTLNGKPLLDETPLSSSQIAPFSTLILRSRLLGGGGDGGATGAESRDCYLNMYA 105

Query: 64  VNNRCYSVKLFYIFRSVNIDENLGLINPLVSSSTTFEFMFEILKREPLMECLI 117
                   K+    + ++   N  L N  +S     + +  I  +E L+E LI
Sbjct: 106 EKK---PDKVDPNEQRLSKWLNCALSNETLSEPCVIDKLGNIFNKESLVEALI 155

[Close]
BLAST of Cla97C06G121440.1 vs. TrEMBL
Match: tr|A0A1Q3DEF4|A0A1Q3DEF4_CEPFO (Rtf2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34259 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 9   HLTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           + TLNGKP  DST +PN  I PLSTLILR R LG GGDGGATGA SRDCYLNM+
Sbjct: 50  YFTLNGKPLDDSTPLPNPQITPLSTLILRPRLLGGGGDGGATGAESRDCYLNMY 103

[Close]
BLAST of Cla97C06G121440.1 vs. TAIR10
Match: AT5G58020.1 (unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-10
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 10  LTLNGKPFLDSTTIPNSLIPPLSTLILRTRFLGSGGDGGATGAASRDCYLNMF 63
           +TL+GK    ST I  S +P +S L L  R  G GGDGGATGA SRDCYLNM+
Sbjct: 51  ITLDGKLLNGSTRIQVSKLPSVSMLTLFPRLRGGGGDGGATGAESRDCYLNMY 103

The following BLAST results are available for this feature:
BLAST of Cla97C06G121440.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023516862.11.2e-1779.66protein RTF2 homolog [Cucurbita pepo subsp. pepo][more]
XP_022922055.13.4e-1779.66protein RTF2 homolog [Cucurbita moschata][more]
XP_008444038.11.9e-1549.54PREDICTED: protein RTF2 homolog [Cucumis melo][more]
XP_022933589.11.9e-1547.22protein RTF2 homolog [Cucurbita moschata][more]
XP_023005959.13.2e-1577.78protein RTF2 homolog isoform X1 [Cucurbita maxima] >XP_023005964.1 protein RTF2 ... [more]
BLAST of Cla97C06G121440.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B9F3|A0A1S3B9F3_CUCME1.2e-1549.54protein RTF2 homolog OS=Cucumis melo OX=3656 GN=LOC103487489 PE=4 SV=1[more]
tr|A0A0A0LTI5|A0A0A0LTI5_CUCSA3.6e-1583.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269330 PE=4 SV=1[more]
tr|A0A068UPL2|A0A068UPL2_COFCA3.0e-1474.55Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030865001 PE=4 ... [more]
tr|A0A1J7J2T8|A0A1J7J2T8_LUPAN6.7e-1445.13Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06957 PE=4 S... [more]
tr|A0A1Q3DEF4|A0A1Q3DEF4_CEPFO1.2e-1374.07Rtf2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_342... [more]
BLAST of Cla97C06G121440.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C06G121440.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58020.14.9e-1058.49unknown protein[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902979 mitotic DNA replication termination
cellular_component GO:0005634 nucleus
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C06G121440Cla97C06G121440gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C06G121440.1.CDS.1Cla97C06G121440.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C06G121440.1.exon.1Cla97C06G121440.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C06G121440.1Cla97C06G121440.1-proteinpolypeptide