Carg12823 (gene) Silver-seed gourd

Overview
NameCarg12823
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtein translation factor SUI1-like protein
LocationCucurbita_argyrosperma_scaffold_043 : 497030 .. 498089 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCATTCCTCTCATCGTTCTTCCTTCCTTGTTCCTTTGATCTCTTTCGCGCGTTCTTGGTCTTTAGCTTTCTGGTGAGTTTCTGGTTCCTTCTGAATTCGTAGATTTTGTTCTTCCTTAGCCTGGATTTTCTTCTTTTTGTTTGTTTATGTCTGAGATTGATCGTGGTTAGGGTTTTGTTTATATCTCTTTGACTTTTGTGTTTTTTCTCGCAATTCCGAATTTGTTTGGTAAGATTCTGGTGTTGCTTCGTTTATGGAAGCCATGGATATTGCTTCGTTTGTATCCTGCTGGAATTTTGTCTTTCTTTCATGTTGTCAAGGGTTTTTTTATACGAGACGCATGTTTTGATCACTTAGGTCTCCAGTTAAGTCGTGGATGAATTGGATATTGCGAATTTTTGCTATATGTAAATTCTGGAGTTTTTGTTATGCCTTTCTCTCAATCCCGAATGTTTTCAGATCACCAGTTGTTCTGTTTGGTTTGAGCTTCATCCGAACTTGATTTTTGGCTATTTGTAAATTTCGGAGTTTTTGTTATGCCTTTCTCTGAATCCCGTCAGATTACCTGTTGTTCTGTTTGGTTTGAGCTTCATACTAACTTGATTTTCGGCTATATGTAAACTTTGAAGTTTTTGATATGCCTTCCTCTAAATCCCATATGCTTTCAGATTCGCAGTTGTTCAGTTTGGTTTAAAGCTTCATCCAAACAAAGTTCATGGTTGAATTAGACTTCCAGATCCCATCTGCTTTCGATCCATTCGCCGACGCCAAGGATTCTGATGCCCCCGGAACTAAAGCTTATGTTCATATCCGCGTTCAGCAGAGGAATGGCAAAAAGTGCTTGACTACAGTTCAGGGTCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAGGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTTCAAGACAAAGAATTGGGGAAGATAATCCAACTTCAAGGCGATCAACGCAAAAACGTGTCTCAGTTCCTTGTCCAGGCTGGTCTCGTTAAGAAGGATCAGATCAAAATTCATGGGTTTTGA

mRNA sequence

ATGTTCTCATTCCTCTCATCGTTCTTCCTTCCTTGTTCCTTTGATCTCTTTCGCGCGTTCTTGGTCTTTAGCTTTCTGATCCCATCTGCTTTCGATCCATTCGCCGACGCCAAGGATTCTGATGCCCCCGGAACTAAAGCTTATGTTCATATCCGCGTTCAGCAGAGGAATGGCAAAAAGTGCTTGACTACAGTTCAGGGTCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAGGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTTCAAGACAAAGAATTGGGGAAGATAATCCAACTTCAAGGCGATCAACGCAAAAACGTGTCTCAGTTCCTTGTCCAGGCTGGTCTCGTTAAGAAGGATCAGATCAAAATTCATGGGTTTTGA

Coding sequence (CDS)

ATGTTCTCATTCCTCTCATCGTTCTTCCTTCCTTGTTCCTTTGATCTCTTTCGCGCGTTCTTGGTCTTTAGCTTTCTGATCCCATCTGCTTTCGATCCATTCGCCGACGCCAAGGATTCTGATGCCCCCGGAACTAAAGCTTATGTTCATATCCGCGTTCAGCAGAGGAATGGCAAAAAGTGCTTGACTACAGTTCAGGGTCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAGGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTTCAAGACAAAGAATTGGGGAAGATAATCCAACTTCAAGGCGATCAACGCAAAAACGTGTCTCAGTTCCTTGTCCAGGCTGGTCTCGTTAAGAAGGATCAGATCAAAATTCATGGGTTTTGA

Protein sequence

MFSFLSSFFLPCSFDLFRAFLVFSFLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Homology
[Close]
BLAST of Carg12823 vs. NCBI nr
Match: XP_022976609.1 (protein translation factor SUI1 homolog 1 [Cucurbita maxima] >XP_022976610.1 protein translation factor SUI1 homolog 1 [Cucurbita maxima])

HSP 1 Score: 215.7 bits (548), Expect = 9.4e-53
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]
BLAST of Carg12823 vs. NCBI nr
Match: XP_022936190.1 (protein translation factor SUI1 homolog 1 [Cucurbita moschata])

HSP 1 Score: 214.5 bits (545), Expect = 2.1e-52
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQD+ELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDRELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]
BLAST of Carg12823 vs. NCBI nr
Match: XP_023536045.1 (protein translation factor SUI1 homolog 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.5 bits (545), Expect = 2.1e-52
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFAD+KDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADSKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]
BLAST of Carg12823 vs. NCBI nr
Match: XP_004139787.1 (PREDICTED: protein translation factor SUI1 homolog 1-like [Cucumis sativus] >XP_008447738.1 PREDICTED: protein translation factor SUI1 homolog 1-like [Cucumis melo] >XP_011658975.1 PREDICTED: protein translation factor SUI1 homolog 1-like [Cucumis sativus] >KGN44162.1 hypothetical protein Csa_7G209580 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 3.6e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTK YVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]
BLAST of Carg12823 vs. NCBI nr
Match: XP_011650527.1 (PREDICTED: protein translation factor SUI1 homolog 2-like [Cucumis sativus] >XP_016903023.1 PREDICTED: protein translation factor SUI1 homolog 2 [Cucumis melo] >KGN56126.1 hypothetical protein Csa_3G077610 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 8.8e-51
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFC 86
           IPSAFDPFADAKDSDAPGTK YVHIRVQQRNGKKCLTTVQGLKKEFSY+KILKD+KK+FC
Sbjct: 8   IPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFC 67

Query: 87  CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 68  CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]
BLAST of Carg12823 vs. TAIR10
Match: AT5G54940.1 (Translation initiation factor SUI1 family protein)

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-48
Identity = 89/105 (84.76%), Postives = 98/105 (93.33%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFC 86
           IPSA+DPFA+AKDSDAPG K  +HIR+QQRNGKK LTTVQGLKKE+SYE+ILKD+KK+FC
Sbjct: 8   IPSAYDPFAEAKDSDAPGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERILKDLKKDFC 67

Query: 87  CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CNGNVVQDKELGKIIQLQGDQRK VSQFLVQ G+ KKDQIKIHGF
Sbjct: 68  CNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112

[Close]
BLAST of Carg12823 vs. TAIR10
Match: AT1G54290.1 (Translation initiation factor SUI1 family protein)

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-44
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of Carg12823 vs. TAIR10
Match: AT4G27130.1 (Translation initiation factor SUI1 family protein)

HSP 1 Score: 175.6 bits (444), Expect = 2.0e-44
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of Carg12823 vs. TAIR10
Match: AT5G54760.1 (Translation initiation factor SUI1 family protein)

HSP 1 Score: 175.3 bits (443), Expect = 2.6e-44
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of Carg12823 vs. Swiss-Prot
Match: sp|Q94JV4|SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g54290 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.7e-43
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of Carg12823 vs. Swiss-Prot
Match: sp|P41568|SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4g27130 PE=1 SV=2)

HSP 1 Score: 175.6 bits (444), Expect = 3.5e-43
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of Carg12823 vs. Swiss-Prot
Match: sp|Q9SQF4|SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea OX=3712 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-42
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD I+IHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113

[Close]
BLAST of Carg12823 vs. Swiss-Prot
Match: sp|P56330|SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays OX=4577 GN=TIF PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.6e-42
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSD---APGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKK 86
           IP+AFDPFA+A   D   A G+K YVH+R+QQRNG+K LTTVQGLKKEFSY KILKD+KK
Sbjct: 8   IPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKK 67

Query: 87  EFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           EFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 68  EFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]
BLAST of Carg12823 vs. Swiss-Prot
Match: sp|A6MZM2|SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.6e-42
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSD---APGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKK 86
           IP+AFDPFA+A   D   A G+K YVH+R+QQRNG+K LTTVQGLKKEFSY KILKD+KK
Sbjct: 8   IPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKK 67

Query: 87  EFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           EFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 68  EFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]
BLAST of Carg12823 vs. TrEMBL
Match: tr|A0A1S3BI45|A0A1S3BI45_CUCME (protein translation factor SUI1 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103490142 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.4e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTK YVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]
BLAST of Carg12823 vs. TrEMBL
Match: tr|A0A0A0K771|A0A0A0K771_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G209580 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.4e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0 

Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTK YVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]
BLAST of Carg12823 vs. TrEMBL
Match: tr|A0A1S4E468|A0A1S4E468_CUCME (protein translation factor SUI1 homolog 2 OS=Cucumis melo OX=3656 GN=LOC103501585 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.8e-51
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFC 86
           IPSAFDPFADAKDSDAPGTK YVHIRVQQRNGKKCLTTVQGLKKEFSY+KILKD+KK+FC
Sbjct: 8   IPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFC 67

Query: 87  CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 68  CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]
BLAST of Carg12823 vs. TrEMBL
Match: tr|A0A0A0L7M8|A0A0A0L7M8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077610 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.8e-51
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFC 86
           IPSAFDPFADAKDSDAPGTK YVHIRVQQRNGKKCLTTVQGLKKEFSY+KILKD+KK+FC
Sbjct: 8   IPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFC 67

Query: 87  CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 68  CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]
BLAST of Carg12823 vs. TrEMBL
Match: tr|A0A2P4N5H0|A0A2P4N5H0_QUESU (Protein translation factor sui1 like 2 OS=Quercus suber OX=58331 GN=CFP56_77547 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.6e-48
Identity = 94/105 (89.52%), Postives = 101/105 (96.19%), Query Frame = 0 

Query: 27  IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFC 86
           IPSAFDPFADAKDSDAPG K YVHIR+QQRNGKKCLTTVQGLK+ FSY+KILKD+KK+FC
Sbjct: 8   IPSAFDPFADAKDSDAPGAKGYVHIRIQQRNGKKCLTTVQGLKETFSYDKILKDIKKQFC 67

Query: 87  CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CNGNVVQDK LGKIIQLQGDQRKNVSQFLVQAG+V+KDQIKIHGF
Sbjct: 68  CNGNVVQDKALGKIIQLQGDQRKNVSQFLVQAGIVQKDQIKIHGF 112

The following BLAST results are available for this feature:
BLAST of Carg12823 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022976609.19.4e-5399.07protein translation factor SUI1 homolog 1 [Cucurbita maxima] >XP_022976610.1 pro... [more]
XP_022936190.12.1e-5298.13protein translation factor SUI1 homolog 1 [Cucurbita moschata][more]
XP_023536045.12.1e-5298.13protein translation factor SUI1 homolog 1 [Cucurbita pepo subsp. pepo][more]
XP_004139787.13.6e-5298.13PREDICTED: protein translation factor SUI1 homolog 1-like [Cucumis sativus] >XP_... [more]
XP_011650527.18.8e-5196.19PREDICTED: protein translation factor SUI1 homolog 2-like [Cucumis sativus] >XP_... [more]
BLAST of Carg12823 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G54940.11.7e-4884.76Translation initiation factor SUI1 family protein[more]
AT1G54290.11.5e-4481.13Translation initiation factor SUI1 family protein[more]
AT4G27130.12.0e-4481.13Translation initiation factor SUI1 family protein[more]
AT5G54760.12.6e-4481.13Translation initiation factor SUI1 family protein[more]
BLAST of Carg12823 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q94JV4|SUI12_ARATH2.7e-4381.13Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
sp|P41568|SUI11_ARATH3.5e-4381.13Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4... [more]
sp|Q9SQF4|SUI1_BRAOL1.0e-4280.19Protein translation factor SUI1 homolog OS=Brassica oleracea OX=3712 PE=3 SV=1[more]
sp|P56330|SUI1_MAIZE6.6e-4276.85Protein translation factor SUI1 homolog OS=Zea mays OX=4577 GN=TIF PE=3 SV=1[more]
sp|A6MZM2|SUI1_ORYSI6.6e-4276.85Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 G... [more]
BLAST of Carg12823 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BI45|A0A1S3BI45_CUCME2.4e-5298.13protein translation factor SUI1 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A0A0K771|A0A0A0K771_CUCSA2.4e-5298.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G209580 PE=4 SV=1[more]
tr|A0A1S4E468|A0A1S4E468_CUCME5.8e-5196.19protein translation factor SUI1 homolog 2 OS=Cucumis melo OX=3656 GN=LOC10350158... [more]
tr|A0A0A0L7M8|A0A0A0L7M8_CUCSA5.8e-5196.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077610 PE=4 SV=1[more]
tr|A0A2P4N5H0|A0A2P4N5H0_QUESU4.6e-4889.52Protein translation factor sui1 like 2 OS=Quercus suber OX=58331 GN=CFP56_77547 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR036877SUI1_dom_sf
IPR001950SUI1
IPR005874SUI1_euk
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12823-RACarg12823-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005874Eukaryotic translation initiation factor SUI1TIGRFAMTIGR01160TIGR01160coord: 29..131
e-value: 1.0E-51
score: 172.1
IPR005874Eukaryotic translation initiation factor SUI1PIRSFPIRSF004499Transl_init_SUI1_Eukcoord: 22..131
e-value: 1.3E-46
score: 155.4
IPR005874Eukaryotic translation initiation factor SUI1CDDcd11566eIF1_SUI1coord: 48..130
e-value: 2.11874E-49
score: 153.845
NoneNo IPR availableGENE3DG3DSA:3.30.780.10coord: 19..131
e-value: 1.3E-45
score: 156.6
NoneNo IPR availablePANTHERPTHR10388:SF36SUBFAMILY NOT NAMEDcoord: 25..131
NoneNo IPR availablePANTHERPTHR10388EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1coord: 25..131
IPR001950SUI1 domainPFAMPF01253SUI1coord: 46..119
e-value: 1.5E-23
score: 83.0
IPR001950SUI1 domainPROSITEPS50296SUI1coord: 49..119
score: 22.77
IPR036877SUI1 domain superfamilySUPERFAMILYSSF55159eIF1-likecoord: 23..131

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12823Cla016325Watermelon (97103) v1carwmB0904
Carg12823Csa7G209580Cucumber (Chinese Long) v2carcuB0922
Carg12823MELO3C013163Melon (DHL92) v3.5.1carmeB0890
Carg12823ClCG09G010810Watermelon (Charleston Gray)carwcgB0879
Carg12823CSPI07G09790Wild cucumber (PI 183967)carcpiB0943
Carg12823Cucsa.007240Cucumber (Gy14) v1carcgyB1021
Carg12823CmaCh01G011290Cucurbita maxima (Rimu)carcmaB1245
Carg12823CmaCh09G009550Cucurbita maxima (Rimu)carcmaB1240
Carg12823CmoCh09G009530Cucurbita moschata (Rifu)carcmoB1211
Carg12823CmoCh01G011800Cucurbita moschata (Rifu)carcmoB1215
Carg12823Lsi02G019030Bottle gourd (USVL1VR-Ls)carlsiB823
Carg12823Lsi05G005950Bottle gourd (USVL1VR-Ls)carlsiB827
Carg12823Cp4.1LG02g01050Cucurbita pepo (Zucchini)carcpeB1254
Carg12823Cp4.1LG06g08880Cucurbita pepo (Zucchini)carcpeB1255
Carg12823CsGy7G009290Cucumber (Gy14) v2carcgybB0893
Carg12823MELO3C013163.2Melon (DHL92) v3.6.1carmedB0897
Carg12823CsaV3_7G021830Cucumber (Chinese Long) v3carcucB0944
Carg12823Cla97C09G173550Watermelon (97103) v2carwmbB0950
Carg12823Bhi09G001377Wax gourdcarwgoB1048
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12823Carg05625Silver-seed gourdcarcarB641
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12823Cucumber (Gy14) v2carcgybB0896
Carg12823Cucurbita pepo (Zucchini)carcpeB1253
Carg12823Wild cucumber (PI 183967)carcpiB0942
Carg12823Cucumber (Chinese Long) v2carcuB0921
Carg12823Cucumber (Chinese Long) v3carcucB0943
Carg12823Cucumber (Chinese Long) v3carcucB0946
Carg12823Watermelon (Charleston Gray)carwcgB0881
Carg12823Watermelon (97103) v2carwmbB0944