Carg11519 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11519
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein FAR1-RELATED SEQUENCE 5
Location	Cucurbita_argyrosperma_scaffold_083 : 388078 .. 390864 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTCCTTTCTTTTGAAGTTCGTGGAATATGCTAGTGGTCGATCCAATTGTTGAATCCCAGTAGTGGAACCATCCACAAGATCTTCAGCAAAATCATACCAACTTTTGTAATTTCAAGACCAGTTCCTTTTGACAAAATCTGTTGCTTATACTTCAAAATTAGTTCTCGCCGTCAAAAACCCACTTCTCCAATCGATCCAATACCATAACCATCTAAACAAAAAATTCAGGGTTCTCACAGTTCATCGGCAAGATTCTACGCCGTTGCATCTCTTCATCGTTTCAATGAGCGAAGGGGAAGAGATTTCAGTGAAAATCCACAGAACCCGACTCCCGTTTTGAGCCCAAGTTCACTTCAAACTTCAAGTATTTGCTCAGTTCAGTAGCGCGTCATCAGTTTTCTTCATTTAATCTTCGATTTGTGTGTAAAGCGCTGTCGACGGATTAGGAGTGTTTCTATTCAGTGAGTAATCATAATTCTGTTTTTGGGGTTTCGTTTTGTCATTCATTCTATGGTACTTTGCTGCTTGGATCCTGAAACGTTTCTAATTTACCGAATCTTTGATGTTGTTCTATCTAAGTTCATGCCCTAATCTGGCTGCTAATTGAATTTTCCCACATGTCGACTCTTGGGGTTGATTAAAGAGTAGGGCAGATTGTTGAAACTAGGCTGCATTTTCATTGTTCTACATAGTTGATTGATGTTTGTAGTACTATCTAGTTGGAGAATTGCTATATACTTGAATTATTTCACTTAGGTTCTTGATACTGATTCAAAAGAATGGCAATGGTTCATGTTTCACTTAGGTTCTCTATTGATTGATGCTGTTCTGATTGTTTTTCTTTTCCTGCTGTTTGAAGGAATGAAGTTACCTGTCATCCAGGTACAGCAGTGTCGATTTTGTTAATCCATTTTTTTGTTCTTGTTTGTGTAAACTTCTTTGTGCTTCACATCGTGAGTTGATGGAGTCAAACATGATCAAAAGCTTGTGTTGGGGAGTTTTCTTATCAATATGGCTTCTTTGAGATGAGTCCAATCATGGGATAAGATAGAAGAGTCGATTCTTTCTTATTTCCTTTTTTTAGTTTGAATGAATGGAGGATACCCGTGAGATCCCACATCGATTGGAGAGAGGAACAAGTGCCAACGAGAACGTTGGGCTCCGAAGGGGTGGATTGTGAGATCCCACGTTGATGAGAGAGGGGAACGAGTGTCAGCAAGAATGCTGGACCTTGAAAGGGGGTGGATTGTGAGATCTCACATCAGTTGGAGAGGGGAACAAGACTTTCTTTATAAGAGTGTGAAAACCTCTCCCTAGCAAACGCATTTTAACAACCTTGAAAGGAAGCCCGAAAGGGAAAGCCTAAAGAGGACAATATCTACTAGCGGTGGGCTTGGGTTGTTACAATATCTCATACTCAAATCATTGTTCCTTTATGCTTTTATTTATTTTTCAAAAGTTATATTTCCATATTTAACTTGATATTGGAAAAAGGGTACTTTGCAATCTGGAAGAGGTTACACTTGCTTTCAAATATGGACAATATAATAAATACTGCAATTGGCCTAGATTGATTGAGAATCATAACTAGTAAAGAAATTCGAGAGTGTACTGGTTATAATATCGTTTCCTATACGCTTTAAACTCGTTTGCAATGTTAGTAATGTTGATGAACGTGTTGCAGTGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGTGAGTTATTCTGATTCTCTAACATATGTTCTATGCTTCATGTTTGACAAGAGGACTGTGTTGAATTAGATGCTGTGATACCATGCAAAAGGTTTCTTTGTTTCTTTGTTCATTGATTTTTTTTGAGTTAGAACATGTGGGGTGGGGTGAGGACTCAAATCTTTGACCTCATACTATCGAGGGGAGGATTTGAGACCTCCCCTTACTCCCTAGGATCACTCACGACGTTTCATGCCAAGTCGGTTACCTTTAGAACCAACCCTTGTGACCGAATAACTCGATACTAAAATGAACATCCTTACTTTTACGATACGAGATAGAAGGATATGTATCTAGGGGAGATTCGAGAGTTCTCCTTACTCCCCGTGATCGCTTACCAAAAGTCCATCTCTCTCCATATAGGAAGTGTGCTAAATAGTCATAGCCACTCACGACGTTCCATGCGAAAGTCGGTTCCTTTTGCAACCATCCCTTGTGCCCAAATAGCTCTAATAATAAACTGAACCTCTTTACTCTAACCGGGCATAGAGGGATATGTAACCAAGGGAAGATTTGAGAGTTCCCCATACTCCCCATGATCACTTACCAAAAGTTAGCCCTTCTCCGTACCGAAAGTACGCTAGACAGCTATAGCCACTAACAATGTTCCATGTCAAAGTAAGTTTGTTTGTGACGGTC

mRNA sequence

TCCTTCCTTTCTTTTGAAGTTCGTGGAATATGCTAGTGGTCGATCCAATTGTTGAATCCCAGTAGTGGAACCATCCACAAGATCTTCAGCAAAATCATACCAACTTTTGTAATTTCAAGACCAGTTCCTTTTGACAAAATCTGTTGCTTATACTTCAAAATTAGTTCTCGCCGTCAAAAACCCACTTCTCCAATCGATCCAATACCATAACCATCTAAACAAAAAATTCAGGGTTCTCACAGTTCATCGGCAAGATTCTACGCCGTTGCATCTCTTCATCGTTTCAATGAGCGAAGGGGAAGAGATTTCAGTGAAAATCCACAGAACCCGACTCCCGTTTTGAGCCCAAGTTCACTTCAAACTTCAAGTATTTGCTCAGTTCAGTAGCGCGTCATCAGTTTTCTTCATTTAATCTTCGATTTGTGTGTAAAGCGCTGTCGACGGATTAGGAGTGTTTCTATTCATGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGTGAGTTATTCTGATTCTCTAACATATGTTCTATGCTTCATGTTTGACAAGAGGACTGTGTTGAATTAGATGCTGTGATACCATGCAAAAGGTTTCTTTGTTTCTTTGTTCATTGATTTTTTTTGAGTTAGAACATGTGGGGTGGGGTGAGGACTCAAATCTTTGACCTCATACTATCGAGGGGAGGATTTGAGACCTCCCCTTACTCCCTAGGATCACTCACGACGTTTCATGCCAAGTCGGTTACCTTTAGAACCAACCCTTGTGACCGAATAACTCGATACTAAAATGAACATCCTTACTTTTACGATACGAGATAGAAGGATATGTATCTAGGGGAGATTCGAGAGTTCTCCTTACTCCCCGTGATCGCTTACCAAAAGTCCATCTCTCTCCATATAGGAAGTGTGCTAAATAGTCATAGCCACTCACGACGTTCCATGCGAAAGTCGGTTCCTTTTGCAACCATCCCTTGTGCCCAAATAGCTCTAATAATAAACTGAACCTCTTTACTCTAACCGGGCATAGAGGGATATGTAACCAAGGGAAGATTTGAGAGTTCCCCATACTCCCCATGATCACTTACCAAAAGTTAGCCCTTCTCCGTACCGAAAGTACGCTAGACAGCTATAGCCACTAACAATGTTCCATGTCAAAGTAAGTTTGTTTGTGACGGTC

Coding sequence (CDS)

ATGAATTTAGACGACGGATCAGGGCCAGCGCACAACGCTATTGAGGTTAACATACATGCAGCTGAAGGAAATGTGATTTTGGAGCCATATGTGGGTATGGAGTTTGATTCCGAAGATGCTGCCAGAAAATTTTATGCTGAATATGCCAGACAAATGGGGTTTGTTGTACGAATCATGCAGCGACGTCGTTCTGGAATTGATGGAAGAACGCTAGCTCGGAGGCTTGGATGTAACAAACAAGGTTTCTCTCCCAATCATAGAGGGATTTATGGATTGGATAAGAAATCACGGCCTAGTGCACGTGAGGGCTGCAAGGCAACGATTTTGGTAAAAATGGAGAAGTCTGGAAAATGGGTCGTTACTCGATTTGTGAAGGATCACAATCATCCCTTAGTTGTTTGCTCCAATGGTTTCAACAGCTCGGTGAGTTATTCTGATTCTCTAACATATGTTCTATGCTTCATGTTTGACAAGAGGACTGTGTTGAATTAG

Protein sequence

MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCSNGFNSSVSYSDSLTYVLCFMFDKRTVLN

Homology

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BLAST of Carg11519 vs. NCBI nr
Match: XP_022953365.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita moschata] >XP_022953366.1 protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 291.6 bits (745), Expect = 1.7e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

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BLAST of Carg11519 vs. NCBI nr
Match: XP_022991543.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita maxima] >XP_022991544.1 protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 291.6 bits (745), Expect = 1.7e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

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BLAST of Carg11519 vs. NCBI nr
Match: XP_023548849.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.6 bits (745), Expect = 1.7e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

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BLAST of Carg11519 vs. NCBI nr
Match: XP_004148952.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 2.0e-73
Identity = 135/141 (95.74%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHN+IEVN HAA+GN++LEPYVGMEFDSEDAAR+FYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNSIEVNTHAADGNLVLEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

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BLAST of Carg11519 vs. NCBI nr
Match: KGN44733.1 (hypothetical protein Csa_7G375750 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 2.0e-73
Identity = 135/141 (95.74%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHN+IEVN HAA+GN++LEPYVGMEFDSEDAAR+FYAEYARQMGFVVRIMQ
Sbjct: 517 MNLDDGSGPAHNSIEVNTHAADGNLVLEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 576

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 577 RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 636

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 637 TRFVKDHNHPLVVCSNGFNSS 657

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BLAST of Carg11519 vs. TAIR10
Match: AT4G12850.1 (Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 152.5 bits (384), Expect = 2.2e-37
Identity = 76/119 (63.87%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 28  EPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHR 87
           EPYVG++F+SE+ A+ FY EY++++GFVVR+MQRRRSGIDGRTLARRLGCNKQGF PN++
Sbjct: 9   EPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFGPNNQ 68

Query: 88  GIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCSNGFNSSVSYSD 147
                        REGCKATILVKMEKSGKWVVTRF+K+HNH L     G +S  S++D
Sbjct: 69  ----XXXXXXXXXREGCKATILVKMEKSGKWVVTRFIKEHNHSLQFI--GSSSYDSFAD 121

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BLAST of Carg11519 vs. TAIR10
Match: AT2G43280.1 (Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-33
Identity = 65/107 (60.75%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 27  LEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNH 86
           +EP  G+ F+SEDAA+ FY +Y+R++GFV+R+M  RRS  DGR LARR GCNK+G   + 
Sbjct: 20  IEPREGIIFESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSI 79

Query: 87  RGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVV 134
           RG +G  +K RPS REGCKA I VK ++SGKWV+T+FVK+HNHPLVV
Sbjct: 80  RGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLVV 126

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BLAST of Carg11519 vs. TAIR10
Match: AT3G07500.1 (Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 117.9 bits (294), Expect = 6.0e-27
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 22  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 81
           E + ++EP++GMEF+SE+AA+ FY  YA  MGFV+R+   RRS  DG  + RRL CNK+G
Sbjct: 26  EASPMVEPFIGMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEG 85

Query: 82  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCS 136
           F    R      +K R   REGCKA I+VK EKSG W+VT+F K+HNHPL+  S
Sbjct: 86  FR-RSRPRRSESRKPRAITREGCKALIVVKREKSGTWLVTKFEKEHNHPLLPLS 138

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BLAST of Carg11519 vs. TAIR10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-23
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 28  EPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFS-PNH 87
           EPYVG EF+SE AA  FY  YA ++GFV+R+ +  RS  DG  + R+L CNK+G+  P+ 
Sbjct: 69  EPYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSK 128

Query: 88  RGIYGLDK--KSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 133
           R     DK  + R   R GCKA IL++ E SGKWV+T+FVK+HNH L+
Sbjct: 129 R-----DKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLM 171

[Close]

BLAST of Carg11519 vs. TAIR10
Match: AT4G38180.1 (FAR1-related sequence 5)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-23
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 27  LEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGF-SPN 86
           LEPY G+EF+SE+AA+ FY  YAR++GF  R+   RRS  DG  + R+  C K+GF + N
Sbjct: 71  LEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMN 130

Query: 87  HRGIYGLD-KKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 133
            +     + K+ R   R GCKA++ VKM+ SGKW+V+ FVKDHNH LV
Sbjct: 131 EKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178

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BLAST of Carg11519 vs. Swiss-Prot
Match: sp|Q9SZL8|FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.3e-22
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 27  LEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGF-SPN 86
           LEPY G+EF+SE+AA+ FY  YAR++GF  R+   RRS  DG  + R+  C K+GF + N
Sbjct: 71  LEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMN 130

Query: 87  HRGIYGLD-KKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 133
            +     + K+ R   R GCKA++ VKM+ SGKW+V+ FVKDHNH LV
Sbjct: 131 EKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178

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BLAST of Carg11519 vs. Swiss-Prot
Match: sp|Q3E7I5|FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 22  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 81
           EG   +EPYVG+EFD+ + AR+FY  YA + GF VR  Q  RS  DG   +RR  C+K+G
Sbjct: 36  EGGSGVEPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEG 95

Query: 82  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 132
           F  N              +R GC A I V+   +GKWV+ +  K+HNH L
Sbjct: 96  FQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131

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BLAST of Carg11519 vs. Swiss-Prot
Match: sp|Q9M8J3|FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 22  EGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQG 81
           EG+  LEPYVG+EFD+ + AR +Y  YA + GF VR  Q  RS  DG   +RR  C+K+G
Sbjct: 21  EGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEG 80

Query: 82  FSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 132
           F  N              +R GC A I V+   +GKWV+ +  K+HNH L
Sbjct: 81  FQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDL 116

[Close]

BLAST of Carg11519 vs. Swiss-Prot
Match: sp|Q9SWG3|FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 23  GNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGF 82
           G++ LEP  G++FD+ +AA  FY EYA+ MGF   I   RRS      +  +  C++ G 
Sbjct: 45  GDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGV 104

Query: 83  SPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 133
           +P      G   +     +  CKA++ VK    GKW++  FVKDHNH L+
Sbjct: 105 TPESES-SGSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELL 153

[Close]

BLAST of Carg11519 vs. Swiss-Prot
Match: sp|Q3EBQ3|FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.7e-13
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 32  GMEFDSEDAARKFYAEYARQMGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHRGIYG 91
           GM+F+S++AA  FY EYAR +GF + I   RRS   G+ +  ++ C++  F         
Sbjct: 41  GMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSR--FGTKREKATA 100

Query: 92  LDKKSRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLVVCSNGFNSSV 143
           ++ +S P  + GCKA + +K ++  KWV+  FVK+HNH   +C + F  SV
Sbjct: 101 INPRSCP--KTGCKAGLHMKRKEDEKWVIYNFVKEHNHE--ICPDDFYVSV 145

[Close]

BLAST of Carg11519 vs. TrEMBL
Match: tr|A0A0A0K5G0|A0A0A0K5G0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375750 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.4e-73
Identity = 135/141 (95.74%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHN+IEVN HAA+GN++LEPYVGMEFDSEDAAR+FYAEYARQMGFVVRIMQ
Sbjct: 517 MNLDDGSGPAHNSIEVNTHAADGNLVLEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 576

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 577 RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 636

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 637 TRFVKDHNHPLVVCSNGFNSS 657

[Close]

BLAST of Carg11519 vs. TrEMBL
Match: tr|A0A1S3BS39|A0A1S3BS39_CUCME (protein FAR1-RELATED SEQUENCE 5 OS=Cucumis melo OX=3656 GN=LOC103492594 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.7e-71
Identity = 132/141 (93.62%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           MNLDDGSGPAHN++EVN  AA+GNV+ EPYVGMEFDSEDAAR+FYAEYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNSVEVNTDAADGNVVSEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSP+HRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPSHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRFVKDHNHPLVVCSNGFNSS
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSS 141

[Close]

BLAST of Carg11519 vs. TrEMBL
Match: tr|A0A2N9HYE4|A0A2N9HYE4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45274 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.6e-56
Identity = 108/141 (76.60%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           ++L+ G    +N++EVN  + EG V+LEPYVGMEFDSEDAARKFY EYAR++GFVVRIMQ
Sbjct: 11  VDLEKGVEVINNSLEVNTGSLEGGVVLEPYVGMEFDSEDAARKFYVEYARRVGFVVRIMQ 70

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRT+ RRLGCNKQGFSPNHRG  G +KK RPSAREGCKATILVKMEKSGKWVV
Sbjct: 71  RRRSGIDGRTIGRRLGCNKQGFSPNHRGTIGPEKKPRPSAREGCKATILVKMEKSGKWVV 130

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRF KDHNHPLVV +NGF+++
Sbjct: 131 TRFEKDHNHPLVVTANGFSTA 151

[Close]

BLAST of Carg11519 vs. TrEMBL
Match: tr|A0A2I4EFP4|A0A2I4EFP4_9ROSI (protein FAR1-RELATED SEQUENCE 7-like OS=Juglans regia OX=51240 GN=LOC108989158 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 4.8e-55
Identity = 106/141 (75.18%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           M+L+ G    +N++ VN  + EG  + EPYVGMEFDSED ARKFY EYAR++GF+VRIMQ
Sbjct: 1   MDLEKGVEAVNNSLVVNTGSLEGGAVPEPYVGMEFDSEDDARKFYIEYARRVGFIVRIMQ 60

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRG+ G +KK RPSAREGCKATILVKMEKSGKWVV
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGMIGQEKKPRPSAREGCKATILVKMEKSGKWVV 120

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           TRF KDHNHPLVV +NGF+++
Sbjct: 121 TRFEKDHNHPLVVTANGFSTA 141

[Close]

BLAST of Carg11519 vs. TrEMBL
Match: tr|A0A2P4IMT8|A0A2P4IMT8_QUESU (Protein far1-related sequence 5 OS=Quercus suber OX=58331 GN=CFP56_29429 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 9.1e-54
Identity = 105/141 (74.47%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MNLDDGSGPAHNAIEVNIHAAEGNVILEPYVGMEFDSEDAARKFYAEYARQMGFVVRIMQ 60
           M+L+      ++++EVN  + E   +LEPYVGMEFDSEDAARKFY EYAR++GF+VRIMQ
Sbjct: 25  MDLEKEVEVINSSLEVNTGSFEEGAVLEPYVGMEFDSEDAARKFYVEYARRVGFIVRIMQ 84

Query: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120
           RRRSGIDGRTLARRLGCNKQGFSPNHRG  G +KK RPSAREGCKATILVKMEKSGKWVV
Sbjct: 85  RRRSGIDGRTLARRLGCNKQGFSPNHRGTIGPEKKPRPSAREGCKATILVKMEKSGKWVV 144

Query: 121 TRFVKDHNHPLVVCSNGFNSS 142
           +RF K+HNHPLVV +NGF++S
Sbjct: 145 SRFEKEHNHPLVVTANGFSTS 165

The following BLAST results are available for this feature:

BLAST of Carg11519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953365.1	1.7e-75	100.00	protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita moschata] >XP_0229533...	[more]
XP_022991543.1	1.7e-75	100.00	protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita maxima] >XP_022991544...	[more]
XP_023548849.1	1.7e-75	100.00	protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_004148952.1	2.0e-73	95.74	PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus]	[more]
KGN44733.1	2.0e-73	95.74	hypothetical protein Csa_7G375750 [Cucumis sativus]	[more]

BLAST of Carg11519 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12850.1	2.2e-37	63.87	Far-red impaired responsive (FAR1) family protein	[more]
AT2G43280.1	1.5e-33	60.75	Far-red impaired responsive (FAR1) family protein	[more]
AT3G07500.1	6.0e-27	52.63	Far-red impaired responsive (FAR1) family protein	[more]
AT3G59470.1	1.1e-23	50.93	Far-red impaired responsive (FAR1) family protein	[more]
AT4G38180.1	2.4e-23	50.00	FAR1-related sequence 5	[more]

BLAST of Carg11519 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZL8\|FRS5_ARATH	4.3e-22	50.00	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=...	[more]
sp\|Q3E7I5\|FRS12_ARATH	1.6e-16	42.73	Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 S...	[more]
sp\|Q9M8J3\|FRS7_ARATH	1.6e-16	42.73	Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=...	[more]
sp\|Q9SWG3\|FAR1_ARATH	1.1e-14	37.27	Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1...	[more]
sp\|Q3EBQ3\|FRS2_ARATH	4.7e-13	36.94	Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=...	[more]

BLAST of Carg11519 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5G0\|A0A0A0K5G0_CUCSA	1.4e-73	95.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375750 PE=3 SV=1	[more]
tr\|A0A1S3BS39\|A0A1S3BS39_CUCME	1.7e-71	93.62	protein FAR1-RELATED SEQUENCE 5 OS=Cucumis melo OX=3656 GN=LOC103492594 PE=4 SV=...	[more]
tr\|A0A2N9HYE4\|A0A2N9HYE4_FAGSY	2.6e-56	76.60	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45274 PE=4 SV=1	[more]
tr\|A0A2I4EFP4\|A0A2I4EFP4_9ROSI	4.8e-55	75.18	protein FAR1-RELATED SEQUENCE 7-like OS=Juglans regia OX=51240 GN=LOC108989158 P...	[more]
tr\|A0A2P4IMT8\|A0A2P4IMT8_QUESU	9.1e-54	74.47	Protein far1-related sequence 5 OS=Quercus suber OX=58331 GN=CFP56_29429 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR031052	FHY3/FAR1
IPR004330	FAR1_DNA_bnd_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11519-RA	Carg11519-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 43..132 e-value: 6.6E-29 score: 100.4
IPR031052	FHY3/FAR1 family	PANTHER	PTHR31669	FAMILY NOT NAMED	coord: 17..141
None	No IPR available	PANTHER	PTHR31669:SF80	SUBFAMILY NOT NAMED	coord: 17..141

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11519	ClCG09G007820	Watermelon (Charleston Gray)	carwcgB0012
Carg11519	CSPI07G15540	Wild cucumber (PI 183967)	carcpiB0013
Carg11519	Cucsa.388460	Cucumber (Gy14) v1	carcgyB0013
Carg11519	CmaCh17G013450	Cucurbita maxima (Rimu)	carcmaB0020
Carg11519	CmaCh08G002910	Cucurbita maxima (Rimu)	carcmaB0021
Carg11519	CmoCh08G002880	Cucurbita moschata (Rifu)	carcmoB0022
Carg11519	CmoCh17G013080	Cucurbita moschata (Rifu)	carcmoB0021
Carg11519	Lsi02G022070	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11519	Cp4.1LG17g06030	Cucurbita pepo (Zucchini)	carcpeB0023
Carg11519	Cp4.1LG12g10410	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11519	CsGy7G014040	Cucumber (Gy14) v2	carcgybB0012
Carg11519	MELO3C029191.2	Melon (DHL92) v3.6.1	carmedB0013
Carg11519	CsaV3_7G027310	Cucumber (Chinese Long) v3	carcucB0013
Carg11519	Bhi09G000972	Wax gourd	carwgoB0015

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11519	Carg05114	Silver-seed gourd	carcarB009

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11519	Cucumber (Chinese Long) v2	carcuB0013
Carg11519	Melon (DHL92) v3.5.1	carmeB0012
Carg11519	Watermelon (97103) v1	carwmB0014
Carg11519	Watermelon (97103) v2	carwmbB0012