CmoCh08G002880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G002880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Far-red impaired responsive (FAR1) family protein
Location	Cmo_Chr08 : 1779821 .. 1783525 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGATGTTTCTTGGTCCAAGAAAGGTCAAGTCAAGTCAACGCTAGTCGTGTGGGACCTGGTTCGTTACACGTTAAATTAATAAAAACATTTGAATTCTCCAAGTTTTAACGTAAAATCCGATTTCCTTTTCCAAAACGAAGAACAATTTCTTGAATTCCACAAGCGAGAGCGTCCGCAATCCCTAATTTTGTAACTTCAAGAACAGTTGAACATGATTTGTTGCCCTTACTTCACAATCAGTTCTCGCCGTCTAAAACTCATTTCGACGGCCTCACAGTTCGTCGGCAAGATTCTACGCCGTCGCATCCCTTGATCGTTTCAATCAGTGAAGGGGAAGAGATTTCAGTCATACTCTCAAGTTTCTGTTCATTTCATCTTCGATTTGGATGCAAAGCGCTCTCGACGGATTCGGGACTTCGATTCAGTGAGTTCTCATAATCTGTTTCTAGGTTTCCGTTTCGTCTTTTCTTTGTTTTGATTTACATTCTCTGGTTCTTCGCTGCTTGTTCTGAATATTTTGTTGTTCTTTGTTCCAAGTTCATGCCCTAAATTTGCTGCCAATGAATTTTCCCTGGAAGATTCTTGAGCTTGTGCTACATTTTCATTCTTTTACATAGTTGATTGATAATTTTACTGCTATCTGGTTAGAAACTGGGCTGCCACTTTCTATATTGGTTATGTTAATGAATGTGTTGCAGTGAATTTAGACGACGAAACAGGGCGAGCACACGACTCTATTGAGATTAACGGAGATGCAGCTGAAGGAAATTTGATTTTGGAGCCATATGTTGGTATGGAGTTTGATTCTGAAGATGCTGCAAGAAAATTTTATGTTGAATATGCGAGACAGATGGGGTTTGTCGTGCGAATTATGCAGCGACGTTGTTCGGGAATTGATGGAAGAACGTTAGCCCGGAGGCTTGGATGTAATAAACAAGGTTTCTCTCCGAATCGAAGAGGGATTTATGGATCAGATAAGAAACCACGGCCTAGTTCACGAGAGGGCTGCAAGGCAACAATTTTGGTGAAAATGGAGAAGTCTGGAAAATGGATTGTTTCAAGAATTGTGAAGGATCACAATCATCCCTTAGTTGTTTGTTCTAATGGTTTCAGCTGCTCGGTGAGTTATTCTGATTCTAGTATATTTTGTTTGTCCTTTTTTTATGACTATTTAGAATGAGGCACGGTAACTATAACAACTCAAGCCCACCGCTAGCAGATATTATCCTCTTTGGGCTTTTCCTTTCGGGTTTCCCTTCACGTATGCTTGGGAGAGGTTTCTACACCCTTGTAAGGAATGCTTTGTTCTCCTCCCCAACCAATGTGGGATTCACAATCCACCCCATTCGGGGTCCAGCATCCTTATTGGCACATTGCTCGATGTCTGGCTATGATACCATTTGTAACAGCCCAAGCCCACCGTTAGAGATATTGTCCTCTCCAATCATTGTATAGTTAGGAAATTCGGGTTCCTATTAAAAAGGATTTTGGCTCTAAGTTGTAGGATGAGTTTTCTCCGCCGTTCAACTATGCTTCGTAGTTGAAAAGGGTCTATGTTGACTTAGATGCTGTGATACCATGATACCATGCATTAAGTTCCGGTGCCCACTATCCTTGCTAGCACATTGCCCAGTGTCTGGCTATGATACCATTTGTAACAGTCCAAGCCCACCGTTAGCGATATTGTCCTCTCCAATCATTGTATAATTAGAAAATCTGGGTTCCTATTAAAAGGATTTCGGCTCTAAGTTGTAGGATGAGTTTTCTCCGCCGTTTAACTACGCTTCGTAGTTGAAAAAGGGTCTATGTTGACTTTGATGCTGTGATACCATGCATTAAGTTCCTTTATTTCTTTGTTTGAATCTATATAAAACTTCTCTTGGTTCTGAAAAAATGTGTAAGTTTTGCCTAAATCAATGAAAAATGTATGATTTCTTGGAAAGCATTTGGGAGAAACCTCTCTATTTAATGGAAGAGAATGGAGAGGAGTGATAGACTGCCTTATTAATGTGTACATTGGGAGATGGTTAGGGTCAGTCGAGTAAAGTCGTTAGCAGGTTGGACCCTATGATAGTAACTGACCTTGGCATGGAACACTGGTAGTGGCTAGAGCCATTTAGCATATTTCATGTATGTAGAGGGGTGGATTTATGGTAAGTGATCATCGAGAGGAGACACGCAGATCACTTTGGAGTGGAGTTGGAAGGAATGTGGTGAATTTGGGAAAAAGTATTGCGAGTAGAAAAAAGTAGTGGAGGAAAAAAGTAAGGCGGATGGCATACTGAGCTTAGCTCAGTTGGTATACTTTGTACCATCGATCAAAAGGTTAGAGGTTCCAATCTCCCTCCCATAAAGTGTTGGTTATGTGGTAACATTGAACACGGTAGAAGGTGGAGCAAATAGTGTAGGGTGTTACATAGTTAATGGATTAACACTTGTTTTTTATTTGCGTTTGAGAAAATTTGGTATTGATTTTGATTGAAGCCCAAACCCACTTCGAGGAGATATTGTCCTCTTTGGACTTTCTCTTCTGAACTTAGTAGAGAGAGGTTTCCACACCCTTATAAGAAATGCTTCATTTCCATCTCCAATCGATTGGGATCTCACAATCCACCTCTCTTGGAGGCTCAATGTCCTCGTTAGCATACTGCCCGGTGTCTGACTCTGATGCCATTTGTGACAATCCAAGCTCACCGCTAACAAATATTATCTGTTTTGGCCTGTTACGTATTGCCCTCAGCCTCACGGTTTTAAAATGCATCTACTAGAGAGAGGTTTCCACACCCATATAAGAAATGCTTCCTTCTCCTCTCCAACCCACGTGGGATCTCACACATTTGGAGGCTTGAGTGTCCTAAGTGATCTTTGGGGTGCGTCAAATTTGATTGGACATAGCTAATTAAATTTTGGGTAGGAGATTGGAGGATCTAAGTCTACTCTAATCTCAGGTATTACTCAAGAACGGTACAAAATATAGTTGAAGCTTATGATATTGGGAACTAAATCCTGTCATGGACTTTCAGATATAAAAATTTAACCTAGATATTATTAGATTAGATCTATTAGATCTGTTCTCTGTTCCATTTGAGGCTCACTGTCTGTATTCTGTAACATGTAGCCAATTGAATACATTGTTCGAGGATTATTGAAGGTGACTCCCACATTGGTTAATTTAGTAGAAGATCATAGGTTTATAAGTAAGGAATACATTTCCGTTGGTACGAGGCCTTTTGGGGAAGCCCAAACCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCGTTGTGGAGAGTCGTGATTCCTAACATATATTTCCTTTACTTTTTAAACTTTGATGTTCTGGGTTTATTCAAATCTACGACGTATAAAGTGAATCGACATTGGTACTTGTAGGGTGATAAAGATAAGAAGATCGAGGAACTTAAAATGGAGTTGGAGCATCAAGAGCAACAATGCGTAGCATACCGGGAAAAGCTTTTCGATTTCATCTCAACGGTGGAGGAACAAACGGAAGAATTGTCTTCAAAAATACAAATGATCATCGGCAATGTAAGGCAAGTTGAATCTGGTATGCAAAAACATTATCCATTTCGACAATAGTAAATAAAACTTGAATATGCACAGAGTTGAAAATTTGAGTCTCAATGATGTTCTTGATTTAGTAATGTATAGCAGCCATTGATGCATTGATCTGA

mRNA sequence

CATGATGTTTCTTGGTCCAAGAAAGGTCAAGTCAAGTCAACGCTAGTCGTGTGGGACCTGGTTCGTTACACGTTAAATTAATAAAAACATTTGAATTCTCCAAGTTTTAACGTAAAATCCGATTTCCTTTTCCAAAACGAAGAACAATTTCTTGAATTCCACAAGCGAGAGCGTCCGCAATCCCTAATTTTGTAACTTCAAGAACAGTTGAACATGATTTGTTGCCCTTACTTCACAATCAGTTCTCGCCGTCTAAAACTCATTTCGACGGCCTCACAGTTCGTCGGCAAGATTCTACGCCGTCGCATCCCTTGATCGTTTCAATCAGTGAAGGGGAAGAGATTTCAGTCATACTCTCAAGTTTCTGTTCATTTCATCTTCGATTTGGATGCAAAGCGCTCTCGACGGATTCGGGACTTCGATTCAAAACTGGGCTGCCACTTTCTATATTGGTTATGTTAATGAATGTGTTGCAGTGAATTTAGACGACGAAACAGGGCGAGCACACGACTCTATTGAGATTAACGGAGATGCAGCTGAAGGAAATTTGATTTTGGAGCCATATGTTGGTATGGAGTTTGATTCTGAAGATGCTGCAAGAAAATTTTATGTTGAATATGCGAGACAGATGGGGTTTGTCGTGCGAATTATGCAGCGACGTTGTTCGGGAATTGATGGAAGAACGTTAGCCCGGAGGCTTGGATGTAATAAACAAGGTTTCTCTCCGAATCGAAGAGGGATTTATGGATCAGATAAGAAACCACGGCCTAGTTCACGAGAGGGCTGCAAGGCAACAATTTTGGTGAAAATGGAGAAGTCTGGAAAATGGATTGTTTCAAGAATTGTGAAGGATCACAATCATCCCTTAGTTGTTTGTTCTAATGGTTTCAGCTGCTCGGGTGATAAAGATAAGAAGATCGAGGAACTTAAAATGGAGTTGGAGCATCAAGAGCAACAATGCGTAGCATACCGGGAAAAGCTTTTCGATTTCATCTCAACGGTGGAGGAACAAACGGAAGAATTGTCTTCAAAAATACAAATGATCATCGGCAATGTAAGGCAAGTTGAATCTGCCATTGATGCATTGATCTGA

Coding sequence (CDS)

ATGCAAAGCGCTCTCGACGGATTCGGGACTTCGATTCAAAACTGGGCTGCCACTTTCTATATTGGTTATGTTAATGAATGTGTTGCAGTGAATTTAGACGACGAAACAGGGCGAGCACACGACTCTATTGAGATTAACGGAGATGCAGCTGAAGGAAATTTGATTTTGGAGCCATATGTTGGTATGGAGTTTGATTCTGAAGATGCTGCAAGAAAATTTTATGTTGAATATGCGAGACAGATGGGGTTTGTCGTGCGAATTATGCAGCGACGTTGTTCGGGAATTGATGGAAGAACGTTAGCCCGGAGGCTTGGATGTAATAAACAAGGTTTCTCTCCGAATCGAAGAGGGATTTATGGATCAGATAAGAAACCACGGCCTAGTTCACGAGAGGGCTGCAAGGCAACAATTTTGGTGAAAATGGAGAAGTCTGGAAAATGGATTGTTTCAAGAATTGTGAAGGATCACAATCATCCCTTAGTTGTTTGTTCTAATGGTTTCAGCTGCTCGGGTGATAAAGATAAGAAGATCGAGGAACTTAAAATGGAGTTGGAGCATCAAGAGCAACAATGCGTAGCATACCGGGAAAAGCTTTTCGATTTCATCTCAACGGTGGAGGAACAAACGGAAGAATTGTCTTCAAAAATACAAATGATCATCGGCAATGTAAGGCAAGTTGAATCTGCCATTGATGCATTGATCTGA

Homology

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BLAST of CmoCh08G002880 vs. Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.0e-22
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 1


Query: 54  LILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQRRCSGIDGRTLARRLGCNKQGF-- 113
           L LEPY G+EF+SE+AA+ FY  YAR++GF  R+   R S  DG  + R+  C K+GF  
Sbjct: 69  LDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRN 128

Query: 114 SPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIVSRIVKDHNHPLV 162
              +R      K+PR  +R GCKA++ VKM+ SGKW+VS  VKDHNH LV
Sbjct: 129 MNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178

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BLAST of CmoCh08G002880 vs. Swiss-Prot
Match: FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-16
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 51  EGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQRRCSGIDGRTLARRLGCNKQG 110
           EG   +EPYVG+EFD+ + AR+FY  YA + GF VR  Q   S  DG   +RR  C+K+G
Sbjct: 36  EGGSGVEPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEG 95

Query: 111 FSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIVSRIVKDHNHPL 161
           F  N              SR GC A I V+   +GKW++ +I K+HNH L
Sbjct: 96  FQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131

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BLAST of CmoCh08G002880 vs. Swiss-Prot
Match: FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-16
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 51  EGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQRRCSGIDGRTLARRLGCNKQG 110
           EG+  LEPYVG+EFD+ + AR +Y  YA + GF VR  Q   S  DG   +RR  C+K+G
Sbjct: 21  EGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEG 80

Query: 111 FSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIVSRIVKDHNHPL 161
           F  N              SR GC A I V+   +GKW++ +I K+HNH L
Sbjct: 81  FQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDL 116

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BLAST of CmoCh08G002880 vs. Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.2e-15
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1


Query: 41  DSIEINGDAA-EGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQRRCSGIDGRT 100
           D   I GD    G+L LEP  G++FD+ +AA  FY EYA+ MGF   I   R S      
Sbjct: 33  DEFNIGGDVGFSGDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDF 92

Query: 101 LARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIVSRIVKDHNHP 160
           +  +  C++ G +P      GS  +     +  CKA++ VK    GKWI+   VKDHNH 
Sbjct: 93  IDAKFACSRYGVTPESES-SGSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHE 152

Query: 161 LV 162
           L+
Sbjct: 153 LL 153

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BLAST of CmoCh08G002880 vs. Swiss-Prot
Match: FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-12
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 1


Query: 46  NGDAAEGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQRRCSGIDGRTLARRLG 105
           +G+ A+   + E   GM+F+S++AA  FY EYAR +GF + I   R S   G+ +  ++ 
Sbjct: 26  SGNVAQCATVSELRNGMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIA 85

Query: 106 CNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIVSRIVKDHNHPLVVCSN 165
           C++ G    +     +   PR   + GCKA + +K ++  KW++   VK+HNH   +C +
Sbjct: 86  CSRFGTKREK----ATAINPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHE--ICPD 144

Query: 166 GFSCS 171
            F  S
Sbjct: 146 DFYVS 144

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BLAST of CmoCh08G002880 vs. TrEMBL
Match: A0A0A0K5G0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375750 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.6e-93
Identity = 172/201 (85.57%), Postives = 187/201 (93.03%), Query Frame = 1


Query: 30  VNLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQ 89
           +NLDD +G AH+SIE+N  AA+GNL+LEPYVGMEFDSEDAAR+FY EYARQMGFVVRIMQ
Sbjct: 517 MNLDDGSGPAHNSIEVNTHAADGNLVLEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 576

Query: 90  RRCSGIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIV 149
           RR SGIDGRTLARRLGCNKQGFSPN RGIYG DKK RPS+REGCKATILVKMEKSGKW+V
Sbjct: 577 RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 636

Query: 150 SRIVKDHNHPLVVCSNGFSCSGDKDKKIEELKMELEHQEQQCVAYREKLFDFISTVEEQT 209
           +R VKDHNHPLVVCSNGF+ SGDKDKKIEELKMELEHQEQ C+AYREKLF+FIS VEEQT
Sbjct: 637 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKMELEHQEQLCIAYREKLFNFISNVEEQT 696

Query: 210 EELSSKIQMIIGNVRQVESAI 231
           EELSSKIQ+IIGNVRQVES +
Sbjct: 697 EELSSKIQVIIGNVRQVESGM 717

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BLAST of CmoCh08G002880 vs. TrEMBL
Match: A0A061DUS5_THECC (Far-red impaired responsive family protein isoform 2 OS=Theobroma cacao GN=TCM_002653 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.1e-78
Identity = 150/199 (75.38%), Postives = 169/199 (84.92%), Query Frame = 1


Query: 30  VNLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQ 89
           V+LD E G   DS E      EG  ILEPYVGMEF+SED ARKFYVEYARQ+GFVVRIMQ
Sbjct: 10  VDLDKEVGTV-DSSEEKTAEPEGREILEPYVGMEFESEDDARKFYVEYARQVGFVVRIMQ 69

Query: 90  RRCSGIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIV 149
           RR SGIDGRTLARRLGCNKQGFSPN +G +G DKKPRPS+REGCKATILVKMEK+GKW+V
Sbjct: 70  RRRSGIDGRTLARRLGCNKQGFSPNHKGTFGPDKKPRPSAREGCKATILVKMEKTGKWVV 129

Query: 150 SRIVKDHNHPLVVCSNGFSCSGDKDKKIEELKMELEHQEQQCVAYREKLFDFISTVEEQT 209
           +R VK+HNHPL+  +NGFS +GDKDKKIEEL MEL HQEQ C AYREKLF F++ VEEQT
Sbjct: 130 TRFVKEHNHPLIATANGFSTTGDKDKKIEELSMELAHQEQLCSAYREKLFTFMNNVEEQT 189

Query: 210 EELSSKIQMIIGNVRQVES 229
           EELSSKIQ+I+ NVR++ES
Sbjct: 190 EELSSKIQVIVDNVRKLES 207

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BLAST of CmoCh08G002880 vs. TrEMBL
Match: A0A061DMU8_THECC (Far-red impaired responsive family protein isoform 1 OS=Theobroma cacao GN=TCM_002653 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.1e-78
Identity = 152/214 (71.03%), Postives = 177/214 (82.71%), Query Frame = 1


Query: 16  AATFYIGYVNECV-AVNLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFY 75
           A+    G ++E + +++LD E G   DS E      EG  ILEPYVGMEF+SED ARKFY
Sbjct: 56  ASQIIFGCLSETLDSMDLDKEVGTV-DSSEEKTAEPEGREILEPYVGMEFESEDDARKFY 115

Query: 76  VEYARQMGFVVRIMQRRCSGIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCK 135
           VEYARQ+GFVVRIMQRR SGIDGRTLARRLGCNKQGFSPN +G +G DKKPRPS+REGCK
Sbjct: 116 VEYARQVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTFGPDKKPRPSAREGCK 175

Query: 136 ATILVKMEKSGKWIVSRIVKDHNHPLVVCSNGFSCSGDKDKKIEELKMELEHQEQQCVAY 195
           ATILVKMEK+GKW+V+R VK+HNHPL+  +NGFS +GDKDKKIEEL MEL HQEQ C AY
Sbjct: 176 ATILVKMEKTGKWVVTRFVKEHNHPLIATANGFSTTGDKDKKIEELSMELAHQEQLCSAY 235

Query: 196 REKLFDFISTVEEQTEELSSKIQMIIGNVRQVES 229
           REKLF F++ VEEQTEELSSKIQ+I+ NVR++ES
Sbjct: 236 REKLFTFMNNVEEQTEELSSKIQVIVDNVRKLES 268

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BLAST of CmoCh08G002880 vs. TrEMBL
Match: A0A067LA34_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15097 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.3e-76
Identity = 146/201 (72.64%), Postives = 166/201 (82.59%), Query Frame = 1


Query: 30  VNLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQ 89
           ++LD E G    S+E    + EG+ +LEPYVGMEFDSEDAARKFY+EYAR++GFVVRIMQ
Sbjct: 1   MDLDKEVGAVDISVEEKNVSVEGDGVLEPYVGMEFDSEDAARKFYIEYARRIGFVVRIMQ 60

Query: 90  RRCSGIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIV 149
           RR SGIDGRTLARRLGCNKQGFSP  R   G DKKPR S+REGCKATILVKMEKSGKW+V
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPKHRSTIGPDKKPRSSAREGCKATILVKMEKSGKWVV 120

Query: 150 SRIVKDHNHPLVVCSNGFSCSGDKDKKIEELKMELEHQEQQCVAYREKLFDFISTVEEQT 209
           +R  KDHNHPLVV +NGFS +GDKDKKIEEL  ELE QEQ C  YREKL  F++ VEEQT
Sbjct: 121 TRFEKDHNHPLVVTANGFSTAGDKDKKIEELTKELERQEQLCAVYREKLLSFMNNVEEQT 180

Query: 210 EELSSKIQMIIGNVRQVESAI 231
           EELSSKIQ+I+ NVR+VES +
Sbjct: 181 EELSSKIQVIVDNVRKVESEV 201

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BLAST of CmoCh08G002880 vs. TrEMBL
Match: A0A0B0MT75_GOSAR (Far1-related sequence 5-like protein OS=Gossypium arboreum GN=F383_27616 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 8.6e-76
Identity = 141/198 (71.21%), Postives = 170/198 (85.86%), Query Frame = 1


Query: 31  NLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQR 90
           +LD E G+A  S+E      EG+ ILEPYVGMEF+SED A+KFY+EYAR++GFVVRIMQR
Sbjct: 13  DLDKEGGKADSSVEEKTAEPEGSEILEPYVGMEFESEDDAKKFYIEYARRIGFVVRIMQR 72

Query: 91  RCSGIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIVS 150
           R SGIDGRTLARRLGCNKQGFSPN +G  G +KKPRPS+REGCKATILVKMEK+GKW+V+
Sbjct: 73  RRSGIDGRTLARRLGCNKQGFSPNHKGTLGQEKKPRPSAREGCKATILVKMEKTGKWVVT 132

Query: 151 RIVKDHNHPLVVCSNGFSCSGDKDKKIEELKMELEHQEQQCVAYREKLFDFISTVEEQTE 210
           R  K+HNHPL++ +NGF+ +GDKDKKIEEL MEL HQEQ C AYREKLF FI+ VE+QTE
Sbjct: 133 RFEKEHNHPLMITTNGFNTTGDKDKKIEELTMELAHQEQLCSAYREKLFAFINNVEKQTE 192

Query: 211 ELSSKIQMIIGNVRQVES 229
           ELSSKI++I+ NVR++E+
Sbjct: 193 ELSSKIEVIVDNVRKLEA 210

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BLAST of CmoCh08G002880 vs. TAIR10
Match: AT4G12850.1 (AT4G12850.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 201.1 bits (510), Expect = 7.8e-52
Identity = 101/175 (57.71%), Postives = 133/175 (76.00%), Query Frame = 1


Query: 57  EPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQRRCSGIDGRTLARRLGCNKQGFSPNRR 116
           EPYVG++F+SE+ A+ FYVEY++++GFVVR+MQRR SGIDGRTLARRLGCNKQGF PN +
Sbjct: 9   EPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFGPNNQ 68

Query: 117 GIYGSDKKPRPSSREGCKATILVKMEKSGKWIVSRIVKDHNHPL-VVCSNGFSCSGDKDK 176
               S      SSREGCKATILVKMEKSGKW+V+R +K+HNH L  + S+ +    DK++
Sbjct: 69  RSSSSSS----SSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSSYDSFADKER 128

Query: 177 KIEELKMELEHQEQQCVAYREKLFDFISTVEEQTEELSSKIQMIIGNVRQVESAI 231
           KI+EL  E+E Q++ C  YR++L  FI  VE  TEELS K++ I+ NV+++E  I
Sbjct: 129 KIKELTEEIECQDRLCDVYRDRLVSFIDNVEHYTEELSLKVRDIVENVKKLECQI 179

[Close]

BLAST of CmoCh08G002880 vs. TAIR10
Match: AT2G43280.1 (AT2G43280.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-44
Identity = 86/180 (47.78%), Postives = 130/180 (72.22%), Query Frame = 1


Query: 56  LEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQRRCSGIDGRTLARRLGCNKQGFSPNR 115
           +EP  G+ F+SEDAA+ FY +Y+R++GFV+R+M  R S  DGR LARR GCNK+G   + 
Sbjct: 20  IEPREGIIFESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSI 79

Query: 116 RGIYGSDKKPRPSSREGCKATILVKMEKSGKWIVSRIVKDHNHPLVVCSNGFSCSGD-KD 175
           RG +GS +KPRPS+REGCKA I VK ++SGKW++++ VK+HNHPLVV       + D KD
Sbjct: 80  RGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLVVSPREARHTLDEKD 139

Query: 176 KKIEELKMELEHQEQQCVAYREKLFDFISTVEEQTEELSSKIQMIIGNVRQVESAIDALI 235
           K+I+EL +EL ++++ C AY+E+L  F   VEE + +++ K++ ++ N+++ E    AL+
Sbjct: 140 KRIQELTIELRNKKRLCAAYKEQLDAFAKIVEEHSNQIAKKVENVVNNLKEFEHLEHALL 199

[Close]

BLAST of CmoCh08G002880 vs. TAIR10
Match: AT3G07500.1 (AT3G07500.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-34
Identity = 78/185 (42.16%), Postives = 113/185 (61.08%), Query Frame = 1


Query: 51  EGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQRRCSGIDGRTLARRLGCNKQG 110
           E + ++EP++GMEF+SE+AA+ FY  YA  MGFV+R+   R S  DG  + RRL CNK+G
Sbjct: 26  EASPMVEPFIGMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEG 85

Query: 111 FSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIVSRIVKDHNHPLVVCSNGF--- 170
           F  +R       +KPR  +REGCKA I+VK EKSG W+V++  K+HNHPL+  S      
Sbjct: 86  FRRSRPR-RSESRKPRAITREGCKALIVVKREKSGTWLVTKFEKEHNHPLLPLSPNVRRN 145

Query: 171 ----SCSGDKDKKIEELKMELEHQEQQCVAYREKLFDFISTVEEQTEELSSKIQMIIGNV 229
                   +KD KI EL  EL  + ++C A +++L   +  +EE +  L+  I  +I +V
Sbjct: 146 FQLPQTPDEKDAKIRELSAELSRERRRCTALQQQLDMVLKEMEEHSNHLTININSVIQSV 205

[Close]

BLAST of CmoCh08G002880 vs. TAIR10
Match: AT3G59470.1 (AT3G59470.1 Far-red impaired responsive (FAR1) family protein)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-29
Identity = 78/205 (38.05%), Postives = 114/205 (55.61%), Query Frame = 1


Query: 30  VNLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQ 89
           V+LD       D  E  GD        EPYVG EF+SE AA  FY  YA ++GFV+R+ +
Sbjct: 50  VDLDSIPLAVADMTEAQGD--------EPYVGQEFESEAAAHGFYNAYATKVGFVIRVSK 109

Query: 90  RRCSGIDGRTLARRLGCNKQGFS-PNRRGIYGSDK--KPRPSSREGCKATILVKMEKSGK 149
              S  DG  + R+L CNK+G+  P++R     DK  + R  +R GCKA IL++ E SGK
Sbjct: 110 LSRSRHDGSPIGRQLVCNKEGYRLPSKR-----DKVIRQRAETRVGCKAMILIRKENSGK 169

Query: 150 WIVSRIVKDHNHPLVVCSNGFSCSGD----KDKKIEELKMELEHQEQQCVAYREKLFDFI 209
           W++++ VK+HNH L+       C  D    +  KI+EL  +L  ++++   Y+  L    
Sbjct: 170 WVITKFVKEHNHSLMPGRVRRGCIYDQYPNEHDKIQELMQQLAAEKKRAATYKRHLEMLF 229

Query: 210 STVEEQTEELSSKIQMIIGNVRQVE 228
             +E+  E LS +IQ I+ NVR +E
Sbjct: 230 EQIEQHNESLSKRIQHIVDNVRNLE 241

[Close]

BLAST of CmoCh08G002880 vs. TAIR10
Match: AT4G38180.1 (AT4G38180.1 FAR1-related sequence 5)

HSP 1 Score: 105.9 bits (263), Expect = 3.4e-23
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 1


Query: 54  LILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQRRCSGIDGRTLARRLGCNKQGF-- 113
           L LEPY G+EF+SE+AA+ FY  YAR++GF  R+   R S  DG  + R+  C K+GF  
Sbjct: 69  LDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRN 128

Query: 114 SPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIVSRIVKDHNHPLV 162
              +R      K+PR  +R GCKA++ VKM+ SGKW+VS  VKDHNH LV
Sbjct: 129 MNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178

[Close]

BLAST of CmoCh08G002880 vs. NCBI nr
Match: gi|449462447|ref|XP_004148952.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus])

HSP 1 Score: 350.5 bits (898), Expect = 2.2e-93
Identity = 172/201 (85.57%), Postives = 187/201 (93.03%), Query Frame = 1


Query: 30  VNLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQ 89
           +NLDD +G AH+SIE+N  AA+GNL+LEPYVGMEFDSEDAAR+FY EYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNSIEVNTHAADGNLVLEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 60

Query: 90  RRCSGIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIV 149
           RR SGIDGRTLARRLGCNKQGFSPN RGIYG DKK RPS+REGCKATILVKMEKSGKW+V
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 150 SRIVKDHNHPLVVCSNGFSCSGDKDKKIEELKMELEHQEQQCVAYREKLFDFISTVEEQT 209
           +R VKDHNHPLVVCSNGF+ SGDKDKKIEELKMELEHQEQ C+AYREKLF+FIS VEEQT
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKMELEHQEQLCIAYREKLFNFISNVEEQT 180

Query: 210 EELSSKIQMIIGNVRQVESAI 231
           EELSSKIQ+IIGNVRQVES +
Sbjct: 181 EELSSKIQVIIGNVRQVESGM 201

[Close]

BLAST of CmoCh08G002880 vs. NCBI nr
Match: gi|700189500|gb|KGN44733.1| (hypothetical protein Csa_7G375750 [Cucumis sativus])

HSP 1 Score: 350.5 bits (898), Expect = 2.2e-93
Identity = 172/201 (85.57%), Postives = 187/201 (93.03%), Query Frame = 1


Query: 30  VNLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQ 89
           +NLDD +G AH+SIE+N  AA+GNL+LEPYVGMEFDSEDAAR+FY EYARQMGFVVRIMQ
Sbjct: 517 MNLDDGSGPAHNSIEVNTHAADGNLVLEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 576

Query: 90  RRCSGIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIV 149
           RR SGIDGRTLARRLGCNKQGFSPN RGIYG DKK RPS+REGCKATILVKMEKSGKW+V
Sbjct: 577 RRRSGIDGRTLARRLGCNKQGFSPNHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 636

Query: 150 SRIVKDHNHPLVVCSNGFSCSGDKDKKIEELKMELEHQEQQCVAYREKLFDFISTVEEQT 209
           +R VKDHNHPLVVCSNGF+ SGDKDKKIEELKMELEHQEQ C+AYREKLF+FIS VEEQT
Sbjct: 637 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKMELEHQEQLCIAYREKLFNFISNVEEQT 696

Query: 210 EELSSKIQMIIGNVRQVESAI 231
           EELSSKIQ+IIGNVRQVES +
Sbjct: 697 EELSSKIQVIIGNVRQVESGM 717

[Close]

BLAST of CmoCh08G002880 vs. NCBI nr
Match: gi|659100746|ref|XP_008451247.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis melo])

HSP 1 Score: 347.4 bits (890), Expect = 1.9e-92
Identity = 169/201 (84.08%), Postives = 187/201 (93.03%), Query Frame = 1


Query: 30  VNLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQ 89
           +NLDD +G AH+S+E+N DAA+GN++ EPYVGMEFDSEDAAR+FY EYARQMGFVVRIMQ
Sbjct: 1   MNLDDGSGPAHNSVEVNTDAADGNVVSEPYVGMEFDSEDAARRFYAEYARQMGFVVRIMQ 60

Query: 90  RRCSGIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIV 149
           RR SGIDGRTLARRLGCNKQGFSP+ RGIYG DKK RPS+REGCKATILVKMEKSGKW+V
Sbjct: 61  RRRSGIDGRTLARRLGCNKQGFSPSHRGIYGLDKKSRPSAREGCKATILVKMEKSGKWVV 120

Query: 150 SRIVKDHNHPLVVCSNGFSCSGDKDKKIEELKMELEHQEQQCVAYREKLFDFISTVEEQT 209
           +R VKDHNHPLVVCSNGF+ SGDKDKKIEELKMELEHQEQ C+AYREKLF+FIS VEEQT
Sbjct: 121 TRFVKDHNHPLVVCSNGFNSSGDKDKKIEELKMELEHQEQLCIAYREKLFNFISNVEEQT 180

Query: 210 EELSSKIQMIIGNVRQVESAI 231
           EELSSKIQ+IIGNVRQVES +
Sbjct: 181 EELSSKIQVIIGNVRQVESGM 201

[Close]

BLAST of CmoCh08G002880 vs. NCBI nr
Match: gi|590713168|ref|XP_007049566.1| (Far-red impaired responsive family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 150/199 (75.38%), Postives = 169/199 (84.92%), Query Frame = 1


Query: 30  VNLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFYVEYARQMGFVVRIMQ 89
           V+LD E G   DS E      EG  ILEPYVGMEF+SED ARKFYVEYARQ+GFVVRIMQ
Sbjct: 10  VDLDKEVGTV-DSSEEKTAEPEGREILEPYVGMEFESEDDARKFYVEYARQVGFVVRIMQ 69

Query: 90  RRCSGIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIV 149
           RR SGIDGRTLARRLGCNKQGFSPN +G +G DKKPRPS+REGCKATILVKMEK+GKW+V
Sbjct: 70  RRRSGIDGRTLARRLGCNKQGFSPNHKGTFGPDKKPRPSAREGCKATILVKMEKTGKWVV 129

Query: 150 SRIVKDHNHPLVVCSNGFSCSGDKDKKIEELKMELEHQEQQCVAYREKLFDFISTVEEQT 209
           +R VK+HNHPL+  +NGFS +GDKDKKIEEL MEL HQEQ C AYREKLF F++ VEEQT
Sbjct: 130 TRFVKEHNHPLIATANGFSTTGDKDKKIEELSMELAHQEQLCSAYREKLFTFMNNVEEQT 189

Query: 210 EELSSKIQMIIGNVRQVES 229
           EELSSKIQ+I+ NVR++ES
Sbjct: 190 EELSSKIQVIVDNVRKLES 207

[Close]

BLAST of CmoCh08G002880 vs. NCBI nr
Match: gi|590713165|ref|XP_007049565.1| (Far-red impaired responsive family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 152/214 (71.03%), Postives = 177/214 (82.71%), Query Frame = 1


Query: 16  AATFYIGYVNECV-AVNLDDETGRAHDSIEINGDAAEGNLILEPYVGMEFDSEDAARKFY 75
           A+    G ++E + +++LD E G   DS E      EG  ILEPYVGMEF+SED ARKFY
Sbjct: 56  ASQIIFGCLSETLDSMDLDKEVGTV-DSSEEKTAEPEGREILEPYVGMEFESEDDARKFY 115

Query: 76  VEYARQMGFVVRIMQRRCSGIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCK 135
           VEYARQ+GFVVRIMQRR SGIDGRTLARRLGCNKQGFSPN +G +G DKKPRPS+REGCK
Sbjct: 116 VEYARQVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTFGPDKKPRPSAREGCK 175

Query: 136 ATILVKMEKSGKWIVSRIVKDHNHPLVVCSNGFSCSGDKDKKIEELKMELEHQEQQCVAY 195
           ATILVKMEK+GKW+V+R VK+HNHPL+  +NGFS +GDKDKKIEEL MEL HQEQ C AY
Sbjct: 176 ATILVKMEKTGKWVVTRFVKEHNHPLIATANGFSTTGDKDKKIEELSMELAHQEQLCSAY 235

Query: 196 REKLFDFISTVEEQTEELSSKIQMIIGNVRQVES 229
           REKLF F++ VEEQTEELSSKIQ+I+ NVR++ES
Sbjct: 236 REKLFTFMNNVEEQTEELSSKIQVIVDNVRKLES 268

The following BLAST results are available for this feature:

BLAST of CmoCh08G002880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FRS5_ARATH	6.0e-22	50.00	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1	[more]
FRS12_ARATH	2.9e-16	42.73	Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1	[more]
FRS7_ARATH	2.9e-16	42.73	Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1	[more]
FAR1_ARATH	4.2e-15	37.70	Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1	[more]
FRS2_ARATH	5.7e-12	32.00	Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=1 SV=1	[more]

BLAST of CmoCh08G002880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5G0_CUCSA	1.6e-93	85.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375750 PE=3 SV=1	[more]
A0A061DUS5_THECC	4.1e-78	75.38	Far-red impaired responsive family protein isoform 2 OS=Theobroma cacao GN=TCM_0...	[more]
A0A061DMU8_THECC	4.1e-78	71.03	Far-red impaired responsive family protein isoform 1 OS=Theobroma cacao GN=TCM_0...	[more]
A0A067LA34_JATCU	2.3e-76	72.64	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15097 PE=4 SV=1	[more]
A0A0B0MT75_GOSAR	8.6e-76	71.21	Far1-related sequence 5-like protein OS=Gossypium arboreum GN=F383_27616 PE=4 SV...	[more]

BLAST of CmoCh08G002880 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12850.1	7.8e-52	57.71	Far-red impaired responsive (FAR1) family protein	[more]
AT2G43280.1	2.0e-44	47.78	Far-red impaired responsive (FAR1) family protein	[more]
AT3G07500.1	4.3e-34	42.16	Far-red impaired responsive (FAR1) family protein	[more]
AT3G59470.1	1.4e-29	38.05	Far-red impaired responsive (FAR1) family protein	[more]
AT4G38180.1	3.4e-23	50.00	FAR1-related sequence 5	[more]

BLAST of CmoCh08G002880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462447\|ref\|XP_004148952.1\|	2.2e-93	85.57	PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis sativus]	[more]
gi\|700189500\|gb\|KGN44733.1\|	2.2e-93	85.57	hypothetical protein Csa_7G375750 [Cucumis sativus]	[more]
gi\|659100746\|ref\|XP_008451247.1\|	1.9e-92	84.08	PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Cucumis melo]	[more]
gi\|590713168\|ref\|XP_007049566.1\|	5.9e-78	75.38	Far-red impaired responsive family protein isoform 2 [Theobroma cacao]	[more]
gi\|590713165\|ref\|XP_007049565.1\|	5.9e-78	71.03	Far-red impaired responsive family protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004330	FAR1_DNA_bnd_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G002880.1	CmoCh08G002880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 72..161 score: 1.4
None	No IPR available	unknown	Coil	Coil	coord: 170..197 scor
None	No IPR available	PANTHER	PTHR31669:SF44	FAR-RED IMPAIRED RESPONSIVE 1-LIKE PROTEIN	coord: 1..234 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G002880	Cucsa.388460	Cucumber (Gy14) v1	cgycmoB1078
CmoCh08G002880	CmaCh17G013450	Cucurbita maxima (Rimu)	cmacmoB366
CmoCh08G002880	CmaCh08G002910	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G002880	Csa7G375750	Cucumber (Chinese Long) v2	cmocuB900
CmoCh08G002880	ClCG09G007820	Watermelon (Charleston Gray)	cmowcgB785
CmoCh08G002880	CSPI07G15540	Wild cucumber (PI 183967)	cmocpiB913
CmoCh08G002880	Lsi02G022070	Bottle gourd (USVL1VR-Ls)	cmolsiB809
CmoCh08G002880	Cp4.1LG12g10410	Cucurbita pepo (Zucchini)	cmocpeB834
CmoCh08G002880	Cp4.1LG17g06030	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G002880	MELO3C029191.2	Melon (DHL92) v3.6.1	cmomedB912
CmoCh08G002880	CsaV3_7G027310	Cucumber (Chinese Long) v3	cmocucB1066
CmoCh08G002880	Bhi09G000972	Wax gourd	cmowgoB1128
CmoCh08G002880	CsGy7G014040	Cucumber (Gy14) v2	cgybcmoB955
CmoCh08G002880	Carg11519	Silver-seed gourd	carcmoB0022
CmoCh08G002880	Carg05114	Silver-seed gourd	carcmoB0119

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G002880	CmoCh17G013080	Cucurbita moschata (Rifu)	cmocmoB311

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G002880	Watermelon (97103) v2	cmowmbB916
CmoCh08G002880	Watermelon (97103) v1	cmowmB843
CmoCh08G002880	Melon (DHL92) v3.5.1	cmomeB809